Wall clock time and date at job start Mon Mar 30 2020 01:40:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46502 * 1 3 3 C 1.46502 * 119.99990 * 2 1 4 4 C 1.53000 * 109.46739 * 263.66217 * 3 2 1 5 5 H 1.09005 * 110.43701 * 303.50857 * 4 3 2 6 6 C 1.54818 * 110.48920 * 180.82297 * 4 3 2 7 7 C 1.54992 * 102.09346 * 220.44126 * 6 4 3 8 8 O 1.44388 * 103.48965 * 37.02314 * 7 6 4 9 9 C 1.43750 * 106.97259 * 319.93864 * 8 7 6 10 10 C 1.34773 * 120.00081 * 179.97438 * 2 1 3 11 11 O 1.21284 * 120.00179 * 184.85430 * 10 2 1 12 12 C 1.50700 * 119.99990 * 4.85651 * 10 2 1 13 13 C 1.52997 * 109.47301 * 179.97438 * 12 10 2 14 14 C 1.52998 * 109.47424 * 179.97438 * 13 12 10 15 15 C 1.52997 * 109.47424 * 179.97438 * 14 13 12 16 16 C 1.50700 * 109.47301 * 180.02562 * 15 14 13 17 17 H 1.07998 * 120.00047 * 359.97438 * 16 15 14 18 18 C 1.37881 * 119.99957 * 179.97438 * 16 15 14 19 19 N 1.31508 * 119.99916 * 359.97438 * 18 16 15 20 20 Si 1.86797 * 119.99730 * 179.97438 * 18 16 15 21 21 H 1.48504 * 109.47411 * 359.97438 * 20 18 16 22 22 H 1.48498 * 109.47180 * 120.00372 * 20 18 16 23 23 H 1.48503 * 109.46962 * 239.99971 * 20 18 16 24 24 H 1.08997 * 109.47216 * 266.71584 * 1 2 3 25 25 H 1.09001 * 109.47112 * 146.71344 * 1 2 3 26 26 H 1.09007 * 109.46830 * 26.71597 * 1 2 3 27 27 H 1.09003 * 109.47489 * 23.65815 * 3 2 1 28 28 H 1.08994 * 109.47484 * 143.66342 * 3 2 1 29 29 H 1.09002 * 110.90454 * 338.64293 * 6 4 3 30 30 H 1.09003 * 110.90731 * 102.24085 * 6 4 3 31 31 H 1.09001 * 110.62040 * 278.52148 * 7 6 4 32 32 H 1.09000 * 110.75350 * 155.58306 * 7 6 4 33 33 H 1.09005 * 109.87368 * 267.08995 * 9 8 7 34 34 H 1.09000 * 110.00080 * 146.01190 * 9 8 7 35 35 H 1.09007 * 109.46694 * 299.99788 * 12 10 2 36 36 H 1.08994 * 109.47130 * 59.99747 * 12 10 2 37 37 H 1.09000 * 109.46924 * 300.00220 * 13 12 10 38 38 H 1.09006 * 109.47289 * 59.99423 * 13 12 10 39 39 H 1.08998 * 109.46932 * 300.00087 * 14 13 12 40 40 H 1.09001 * 109.46700 * 59.99552 * 14 13 12 41 41 H 1.09007 * 109.47129 * 299.99827 * 15 14 13 42 42 H 1.08999 * 109.46920 * 59.99672 * 15 14 13 43 43 H 0.97009 * 119.99831 * 179.97438 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1975 1.2687 0.0000 4 6 2.5904 1.6307 -1.4337 5 1 3.1733 0.8267 -1.8832 6 6 3.3849 2.9593 -1.4589 7 6 2.8066 3.6596 -2.7148 8 8 1.4082 3.3014 -2.6864 9 6 1.3359 1.9248 -2.2789 10 6 2.1389 -1.1672 0.0005 11 8 3.3485 -1.1690 0.0894 12 6 1.3895 -2.4700 -0.1094 13 6 2.3829 -3.6334 -0.0858 14 6 1.6220 -4.9561 -0.1968 15 6 2.6154 -6.1194 -0.1739 16 6 1.8660 -7.4223 -0.2838 17 1 0.7888 -7.4207 -0.3617 18 6 2.5555 -8.6163 -0.2849 19 7 3.8672 -8.6181 -0.1905 20 14 1.6265 -10.2311 -0.4204 21 1 0.1697 -9.9579 -0.5131 22 1 2.0726 -10.9584 -1.6358 23 1 1.8985 -11.0610 0.7807 24 1 -0.3633 -0.0589 1.0259 25 1 -0.3633 -0.8591 -0.5640 26 1 -0.3633 0.9180 -0.4620 27 1 1.5640 2.0541 0.4124 28 1 3.0961 1.1696 0.6089 29 1 3.1895 3.5463 -0.5615 30 1 4.4524 2.7720 -1.5748 31 1 3.2819 3.2798 -3.6192 32 1 2.9273 4.7406 -2.6442 33 1 1.3205 1.2787 -3.1567 34 1 0.4393 1.7594 -1.6814 35 1 0.6994 -2.5639 0.7292 36 1 0.8298 -2.4894 -1.0445 37 1 3.0727 -3.5391 -0.9245 38 1 2.9430 -3.6141 0.8491 39 1 0.9325 -5.0500 0.6421 40 1 1.0616 -4.9755 -1.1315 41 1 3.3046 -6.0253 -1.0132 42 1 3.1761 -6.1000 0.7606 43 1 4.3523 -9.4582 -0.1908 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000588160966.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:40:54 Heat of formation + Delta-G solvation = -127.912088 kcal Electronic energy + Delta-G solvation = -20503.842603 eV Core-core repulsion = 17354.280760 eV Total energy + Delta-G solvation = -3149.561843 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 269.178 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -41.28888 -40.09946 -36.97546 -36.51303 -34.67310 -33.70454 -31.56209 -30.34753 -28.34099 -27.75436 -26.07859 -24.09319 -23.33813 -21.88781 -21.53522 -19.96880 -18.43619 -17.99047 -17.48504 -17.43180 -16.89121 -16.75896 -16.46401 -16.00321 -15.59184 -14.83309 -14.55888 -14.43131 -14.11351 -13.87874 -13.63419 -13.56918 -13.54984 -13.08701 -13.05307 -12.85860 -12.66796 -12.30650 -12.29778 -12.14964 -12.11735 -11.90513 -11.66747 -11.38555 -11.33739 -11.12871 -10.72422 -10.68302 -10.56173 -9.66501 -8.19159 -6.31286 1.40348 1.41312 1.54822 1.61528 2.01122 2.41748 2.97557 3.13704 3.53834 3.59149 3.73587 3.86773 4.02750 4.11906 4.16927 4.22596 4.28744 4.33581 4.55560 4.60422 4.63669 4.67925 4.75885 4.79719 4.82005 4.83888 4.86337 4.88909 4.98218 5.07309 5.14159 5.18341 5.32422 5.36647 5.54412 5.57314 5.77606 5.87451 5.87791 6.24973 6.34315 6.87471 7.17965 7.38452 8.93409 Molecular weight = 269.18amu Principal moments of inertia in cm(-1) A = 0.039642 B = 0.002733 C = 0.002701 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 706.152020 B =10242.728016 C =10363.365331 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.063 3.937 2 N -0.618 5.618 3 C 0.126 3.874 4 C -0.138 4.138 5 H 0.060 0.940 6 C -0.144 4.144 7 C 0.043 3.957 8 O -0.398 6.398 9 C 0.051 3.949 10 C 0.508 3.492 11 O -0.586 6.586 12 C -0.127 4.127 13 C -0.096 4.096 14 C -0.095 4.095 15 C 0.018 3.982 16 C -0.540 4.540 17 H 0.066 0.934 18 C -0.008 4.008 19 N -0.939 5.939 20 Si 0.970 3.030 21 H -0.257 1.257 22 H -0.279 1.279 23 H -0.279 1.279 24 H 0.073 0.927 25 H 0.087 0.913 26 H 0.093 0.907 27 H 0.108 0.892 28 H 0.065 0.935 29 H 0.093 0.907 30 H 0.084 0.916 31 H 0.060 0.940 32 H 0.112 0.888 33 H 0.050 0.950 34 H 0.102 0.898 35 H 0.117 0.883 36 H 0.117 0.883 37 H 0.040 0.960 38 H 0.041 0.959 39 H 0.061 0.939 40 H 0.060 0.940 41 H -0.016 1.016 42 H -0.016 1.016 43 H 0.263 0.737 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.324 26.294 -1.728 27.952 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.078 4.078 2 N -0.350 5.350 3 C 0.003 3.997 4 C -0.158 4.158 5 H 0.079 0.921 6 C -0.182 4.182 7 C -0.033 4.033 8 O -0.317 6.317 9 C -0.025 4.025 10 C 0.298 3.702 11 O -0.466 6.466 12 C -0.167 4.167 13 C -0.134 4.134 14 C -0.132 4.132 15 C -0.019 4.019 16 C -0.578 4.578 17 H 0.085 0.915 18 C -0.205 4.205 19 N -0.579 5.579 20 Si 0.794 3.206 21 H -0.180 1.180 22 H -0.205 1.205 23 H -0.205 1.205 24 H 0.092 0.908 25 H 0.106 0.894 26 H 0.111 0.889 27 H 0.126 0.874 28 H 0.083 0.917 29 H 0.112 0.888 30 H 0.103 0.897 31 H 0.078 0.922 32 H 0.130 0.870 33 H 0.069 0.931 34 H 0.120 0.880 35 H 0.135 0.865 36 H 0.135 0.865 37 H 0.059 0.941 38 H 0.060 0.940 39 H 0.080 0.920 40 H 0.079 0.921 41 H 0.002 0.998 42 H 0.002 0.998 43 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges -8.765 26.336 -1.720 27.809 hybrid contribution 0.623 -1.324 -0.066 1.465 sum -8.142 25.011 -1.786 26.364 Atomic orbital electron populations 1.22259 0.76869 1.04975 1.03685 1.48020 1.08556 1.05157 1.73284 1.21515 0.97673 0.85243 0.95263 1.22895 0.97110 0.98650 0.97108 0.92093 1.23136 1.00533 0.94624 0.99880 1.23706 0.80891 1.01630 0.97105 1.88842 1.25927 1.27377 1.89576 1.23372 0.98772 0.82819 0.97575 1.21222 0.87551 0.86669 0.74732 1.90682 1.16641 1.88074 1.51180 1.21705 0.99004 0.89733 1.06219 1.21249 0.97510 0.93773 1.00849 1.21438 0.97809 0.92685 1.01275 1.19062 0.94693 0.93855 0.94275 1.21783 0.94048 0.92283 1.49675 0.91530 1.26104 0.95772 1.03761 0.94847 1.70141 1.08271 1.27685 1.51829 0.85326 0.79209 0.78369 0.77691 1.18027 1.20480 1.20471 0.90801 0.89439 0.88865 0.87350 0.91695 0.88837 0.89730 0.92214 0.87020 0.93140 0.87994 0.86522 0.86542 0.94061 0.93982 0.92016 0.92087 0.99790 0.99751 0.92855 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.06 0.63 9.76 127.77 1.25 1.88 16 2 N -0.62 -11.48 2.74 -846.75 -2.32 -13.79 16 3 C 0.13 2.14 4.63 86.38 0.40 2.54 16 4 C -0.14 -2.39 3.26 -9.80 -0.03 -2.43 16 5 H 0.06 1.42 8.14 -2.38 -0.02 1.40 16 6 C -0.14 -1.95 6.71 31.90 0.21 -1.73 16 7 C 0.04 0.58 7.72 72.66 0.56 1.14 16 8 O -0.40 -7.29 11.52 -148.98 -1.72 -9.00 16 9 C 0.05 0.82 7.17 72.35 0.52 1.34 16 10 C 0.51 13.89 7.62 87.66 0.67 14.56 16 11 O -0.59 -21.85 15.64 -3.04 -0.05 -21.90 16 12 C -0.13 -3.18 4.21 29.85 0.13 -3.05 16 13 C -0.10 -3.50 4.50 30.59 0.14 -3.36 16 14 C -0.09 -3.88 5.15 30.59 0.16 -3.72 16 15 C 0.02 1.01 4.97 29.85 0.15 1.16 16 16 C -0.54 -31.44 9.11 25.60 0.23 -31.21 16 17 H 0.07 3.63 7.74 -2.91 -0.02 3.61 16 18 C -0.01 -0.46 5.46 84.66 0.46 0.00 16 19 N -0.94 -59.40 13.29 21.45 0.28 -59.12 16 20 Si 0.97 44.93 29.54 68.60 2.03 46.95 16 21 H -0.26 -11.11 7.11 99.48 0.71 -10.40 16 22 H -0.28 -12.61 7.11 99.48 0.71 -11.91 16 23 H -0.28 -12.60 7.11 99.48 0.71 -11.90 16 24 H 0.07 0.59 8.14 -2.39 -0.02 0.57 16 25 H 0.09 0.74 6.57 -2.39 -0.02 0.73 16 26 H 0.09 0.59 5.77 -2.38 -0.01 0.57 16 27 H 0.11 1.23 8.02 -2.39 -0.02 1.21 16 28 H 0.06 1.39 7.55 -2.39 -0.02 1.38 16 29 H 0.09 1.02 7.87 -2.39 -0.02 1.00 16 30 H 0.08 1.13 8.14 -2.39 -0.02 1.11 16 31 H 0.06 0.81 8.14 -2.39 -0.02 0.79 16 32 H 0.11 1.08 8.14 -2.39 -0.02 1.06 16 33 H 0.05 0.88 8.14 -2.38 -0.02 0.86 16 34 H 0.10 1.27 4.88 -2.39 -0.01 1.26 16 35 H 0.12 2.32 8.05 -2.38 -0.02 2.31 16 36 H 0.12 2.33 7.56 -2.39 -0.02 2.31 16 37 H 0.04 1.66 8.10 -2.39 -0.02 1.64 16 38 H 0.04 1.69 8.10 -2.38 -0.02 1.67 16 39 H 0.06 2.35 8.14 -2.39 -0.02 2.33 16 40 H 0.06 2.33 8.14 -2.39 -0.02 2.31 16 41 H -0.02 -0.99 8.14 -2.38 -0.02 -1.01 16 42 H -0.02 -0.97 8.14 -2.39 -0.02 -0.99 16 43 H 0.26 15.52 8.31 -92.70 -0.77 14.74 16 Total: -1.00 -77.12 344.25 4.03 -73.09 By element: Atomic # 1 Polarization: 5.69 SS G_CDS: 0.96 Total: 6.65 kcal Atomic # 6 Polarization: -27.72 SS G_CDS: 4.84 Total: -22.88 kcal Atomic # 7 Polarization: -70.88 SS G_CDS: -2.03 Total: -72.91 kcal Atomic # 8 Polarization: -29.14 SS G_CDS: -1.76 Total: -30.91 kcal Atomic # 14 Polarization: 44.93 SS G_CDS: 2.03 Total: 46.95 kcal Total: -77.12 4.03 -73.09 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000588160966.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -54.825 kcal (2) G-P(sol) polarization free energy of solvation -77.118 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -131.943 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.031 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.087 kcal (6) G-S(sol) free energy of system = (1) + (5) -127.912 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds