Wall clock time and date at job start Mon Mar 30 2020 01:40:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46499 * 1 3 3 C 1.46502 * 120.00062 * 2 1 4 4 C 1.52996 * 109.47041 * 90.00341 * 3 2 1 5 5 H 1.08997 * 109.47081 * 304.99522 * 4 3 2 6 6 O 1.42891 * 109.47336 * 65.00248 * 4 3 2 7 7 C 1.53003 * 109.47004 * 185.00070 * 4 3 2 8 8 C 1.52996 * 117.49827 * 248.74839 * 7 4 3 9 9 C 1.53001 * 117.49874 * 180.08381 * 7 4 3 10 10 C 1.34779 * 120.00212 * 180.02562 * 2 1 3 11 11 O 1.21279 * 120.00410 * 179.97438 * 10 2 1 12 12 C 1.50703 * 119.99541 * 359.97438 * 10 2 1 13 13 C 1.53000 * 109.46653 * 179.97438 * 12 10 2 14 14 C 1.52999 * 109.46975 * 179.97438 * 13 12 10 15 15 C 1.52998 * 109.47328 * 180.02562 * 14 13 12 16 16 C 1.50708 * 109.47326 * 180.02562 * 15 14 13 17 17 H 1.07994 * 119.99794 * 0.02562 * 16 15 14 18 18 C 1.37877 * 120.00008 * 180.02562 * 16 15 14 19 19 N 1.31514 * 120.00089 * 179.97438 * 18 16 15 20 20 Si 1.86798 * 119.99938 * 359.97438 * 18 16 15 21 21 H 1.48506 * 109.47297 * 90.00444 * 20 18 16 22 22 H 1.48503 * 109.47261 * 210.00263 * 20 18 16 23 23 H 1.48500 * 109.47454 * 330.00270 * 20 18 16 24 24 H 1.09002 * 109.47391 * 89.99876 * 1 2 3 25 25 H 1.09001 * 109.46813 * 329.99933 * 1 2 3 26 26 H 1.09004 * 109.47041 * 210.00060 * 1 2 3 27 27 H 1.09002 * 109.47278 * 210.00284 * 3 2 1 28 28 H 1.09006 * 109.46998 * 329.99806 * 3 2 1 29 29 H 0.96703 * 114.00490 * 59.99746 * 6 4 3 30 30 H 1.09002 * 115.55026 * 34.41659 * 7 4 3 31 31 H 1.08996 * 117.49781 * 359.97438 * 8 7 4 32 32 H 1.09005 * 117.49886 * 145.02416 * 8 7 4 33 33 H 1.09004 * 117.49932 * 214.97559 * 9 7 4 34 34 H 1.08999 * 117.49829 * 0.02562 * 9 7 4 35 35 H 1.08996 * 109.47057 * 299.99739 * 12 10 2 36 36 H 1.08996 * 109.47084 * 60.00703 * 12 10 2 37 37 H 1.08994 * 109.48028 * 300.00003 * 13 12 10 38 38 H 1.09007 * 109.47101 * 60.00827 * 13 12 10 39 39 H 1.08998 * 109.47634 * 300.00696 * 14 13 12 40 40 H 1.08999 * 109.47136 * 60.00615 * 14 13 12 41 41 H 1.09007 * 109.47491 * 300.00297 * 15 14 13 42 42 H 1.09000 * 109.47122 * 60.00234 * 15 14 13 43 43 H 0.96997 * 119.99848 * 179.97438 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1975 1.2687 0.0000 4 6 2.4526 1.7103 1.4425 5 1 1.5063 1.7549 1.9815 6 8 3.3210 0.7725 2.0813 7 6 3.1061 3.0938 1.4443 8 6 4.5637 3.1858 1.9000 9 6 3.4447 3.7133 2.8017 10 6 2.1389 -1.1672 -0.0005 11 8 3.3517 -1.1672 -0.0010 12 6 1.3854 -2.4723 -0.0005 13 6 2.3796 -3.6352 -0.0018 14 6 1.6147 -4.9602 -0.0012 15 6 2.6089 -6.1231 -0.0018 16 6 1.8553 -7.4283 -0.0018 17 1 0.7754 -7.4283 -0.0018 18 6 2.5447 -8.6223 -0.0018 19 7 1.8872 -9.7613 -0.0013 20 14 4.4127 -8.6223 -0.0025 21 1 4.9083 -8.6221 1.3974 22 1 4.9075 -9.8349 -0.7026 23 1 4.9075 -7.4099 -0.7030 24 1 -0.3634 0.0000 -1.0277 25 1 -0.3633 0.8900 0.5139 26 1 -0.3633 -0.8900 0.5139 27 1 3.1499 1.1384 -0.5139 28 1 1.6084 2.0284 -0.5139 29 1 4.1838 0.6810 1.6541 30 1 2.7836 3.7671 0.6501 31 1 5.0569 2.2610 2.1989 32 1 5.2001 3.9201 1.4060 33 1 3.3454 4.7944 2.9003 34 1 3.2023 3.1352 3.6933 35 1 0.7591 -2.5302 0.8897 36 1 0.7585 -2.5298 -0.8903 37 1 3.0057 -3.5772 -0.8922 38 1 3.0069 -3.5779 0.8878 39 1 0.9889 -5.0181 0.8894 40 1 0.9871 -5.0178 -0.8905 41 1 3.2350 -6.0655 -0.8923 42 1 3.2361 -6.0654 0.8877 43 1 2.3722 -10.6013 -0.0017 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000588660355.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:40:55 Heat of formation + Delta-G solvation = -103.917781 kcal Electronic energy + Delta-G solvation = -20558.105521 eV Core-core repulsion = 17409.584150 eV Total energy + Delta-G solvation = -3148.521371 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 269.178 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -41.08512 -39.49576 -36.84527 -36.42765 -35.74036 -34.60039 -32.16169 -30.64027 -27.82992 -27.39313 -25.01805 -23.43483 -23.08618 -21.72305 -21.44083 -20.03132 -18.86384 -18.03672 -17.75470 -17.33509 -16.90536 -16.52739 -16.26758 -15.98101 -15.42689 -14.91758 -14.78654 -14.35764 -14.14588 -13.69396 -13.61159 -13.55161 -13.52100 -13.20207 -12.84460 -12.69714 -12.39535 -12.31344 -12.26585 -12.05677 -11.75310 -11.48009 -11.43072 -11.34354 -11.26035 -11.20886 -11.02367 -10.76145 -10.64903 -9.50653 -8.29801 -6.32821 1.34903 1.36008 1.49220 1.71720 2.07357 2.35999 2.81729 3.05541 3.40876 3.68426 3.72388 3.93698 3.99176 4.03084 4.13359 4.20371 4.26306 4.37397 4.42264 4.60291 4.61187 4.62699 4.75139 4.77047 4.79443 4.85191 4.99367 5.00055 5.04703 5.15218 5.19986 5.20372 5.24715 5.27770 5.57753 5.61344 5.65390 5.68571 6.29450 6.40501 6.71703 6.74920 7.27030 7.31991 8.86840 Molecular weight = 269.18amu Principal moments of inertia in cm(-1) A = 0.031801 B = 0.003081 C = 0.002895 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 880.266757 B = 9086.854184 C = 9668.635784 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.069 3.931 2 N -0.615 5.615 3 C 0.087 3.913 4 C 0.120 3.880 5 H 0.102 0.898 6 O -0.572 6.572 7 C -0.186 4.186 8 C -0.184 4.184 9 C -0.170 4.170 10 C 0.513 3.487 11 O -0.576 6.576 12 C -0.131 4.131 13 C -0.095 4.095 14 C -0.093 4.093 15 C -0.016 4.016 16 C -0.530 4.530 17 H 0.037 0.963 18 C 0.004 3.996 19 N -0.951 5.951 20 Si 0.948 3.052 21 H -0.268 1.268 22 H -0.281 1.281 23 H -0.252 1.252 24 H 0.072 0.928 25 H 0.091 0.909 26 H 0.079 0.921 27 H 0.069 0.931 28 H 0.115 0.885 29 H 0.378 0.622 30 H 0.130 0.870 31 H 0.088 0.912 32 H 0.106 0.894 33 H 0.108 0.892 34 H 0.084 0.916 35 H 0.108 0.892 36 H 0.111 0.889 37 H 0.051 0.949 38 H 0.049 0.951 39 H 0.055 0.945 40 H 0.057 0.943 41 H 0.014 0.986 42 H 0.011 0.989 43 H 0.266 0.734 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.433 32.022 0.880 32.066 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.073 4.073 2 N -0.348 5.348 3 C -0.036 4.036 4 C 0.060 3.940 5 H 0.119 0.881 6 O -0.379 6.379 7 C -0.205 4.205 8 C -0.221 4.221 9 C -0.207 4.207 10 C 0.302 3.698 11 O -0.456 6.456 12 C -0.170 4.170 13 C -0.133 4.133 14 C -0.131 4.131 15 C -0.054 4.054 16 C -0.568 4.568 17 H 0.055 0.945 18 C -0.193 4.193 19 N -0.591 5.591 20 Si 0.771 3.229 21 H -0.193 1.193 22 H -0.206 1.206 23 H -0.176 1.176 24 H 0.091 0.909 25 H 0.110 0.890 26 H 0.097 0.903 27 H 0.087 0.913 28 H 0.133 0.867 29 H 0.227 0.773 30 H 0.148 0.852 31 H 0.106 0.894 32 H 0.124 0.876 33 H 0.126 0.874 34 H 0.102 0.898 35 H 0.126 0.874 36 H 0.129 0.871 37 H 0.070 0.930 38 H 0.067 0.933 39 H 0.073 0.927 40 H 0.076 0.924 41 H 0.032 0.968 42 H 0.030 0.970 43 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges -1.313 31.788 1.264 31.840 hybrid contribution 1.093 -0.624 -0.279 1.289 sum -0.220 31.164 0.985 31.180 Atomic orbital electron populations 1.22095 0.77156 1.04744 1.03325 1.47873 1.08320 1.05222 1.73380 1.22226 0.98474 0.85710 0.97206 1.21891 0.93229 0.85869 0.92974 0.88053 1.86549 1.30220 1.63768 1.57411 1.23076 0.98980 0.98513 0.99901 1.23009 0.91350 1.03385 1.04318 1.22940 1.03045 1.01075 0.93675 1.21023 0.87722 0.86422 0.74605 1.90616 1.15881 1.87937 1.51136 1.21686 0.99150 0.90454 1.05710 1.21258 0.97428 0.93012 1.01580 1.21335 0.97772 0.92759 1.01217 1.19571 0.95979 0.93769 0.96051 1.21542 0.93979 0.91333 1.49979 0.94473 1.25993 1.03940 0.95090 0.94272 1.70059 1.37973 0.98227 1.52889 0.85690 0.79735 0.78261 0.79175 1.19267 1.20637 1.17598 0.90942 0.89030 0.90261 0.91273 0.86660 0.77262 0.85186 0.89359 0.87611 0.87379 0.89791 0.87425 0.87063 0.92990 0.93252 0.92669 0.92437 0.96752 0.97016 0.92496 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 0.72 10.24 127.77 1.31 2.03 16 2 N -0.62 -11.23 2.86 -846.74 -2.42 -13.65 16 3 C 0.09 1.32 5.09 86.38 0.44 1.76 16 4 C 0.12 1.90 3.57 30.59 0.11 2.01 16 5 H 0.10 1.54 8.14 -2.39 -0.02 1.52 16 6 O -0.57 -13.39 11.36 -141.64 -1.61 -15.00 16 7 C -0.19 -2.23 5.70 -10.79 -0.06 -2.29 16 8 C -0.18 -2.46 9.74 30.62 0.30 -2.17 16 9 C -0.17 -2.17 10.19 30.62 0.31 -1.86 16 10 C 0.51 13.57 7.30 87.66 0.64 14.21 16 11 O -0.58 -19.68 14.54 4.32 0.06 -19.61 16 12 C -0.13 -3.26 4.25 29.85 0.13 -3.13 16 13 C -0.09 -3.22 4.50 30.59 0.14 -3.08 16 14 C -0.09 -3.70 5.15 30.59 0.16 -3.54 16 15 C -0.02 -0.81 4.04 29.85 0.12 -0.69 16 16 C -0.53 -31.72 9.66 25.60 0.25 -31.47 16 17 H 0.04 2.39 7.99 -2.91 -0.02 2.37 16 18 C 0.00 0.22 5.47 84.65 0.46 0.68 16 19 N -0.95 -61.10 13.96 21.45 0.30 -60.80 16 20 Si 0.95 46.55 27.47 68.60 1.88 48.44 16 21 H -0.27 -12.66 7.11 99.48 0.71 -11.96 16 22 H -0.28 -13.34 7.11 99.48 0.71 -12.63 16 23 H -0.25 -11.80 6.54 99.48 0.65 -11.15 16 24 H 0.07 0.58 8.14 -2.39 -0.02 0.56 16 25 H 0.09 0.56 8.07 -2.39 -0.02 0.54 16 26 H 0.08 0.83 6.44 -2.38 -0.02 0.81 16 27 H 0.07 1.34 7.42 -2.39 -0.02 1.32 16 28 H 0.12 0.97 8.07 -2.38 -0.02 0.95 16 29 H 0.38 8.62 7.26 -74.06 -0.54 8.09 16 30 H 0.13 1.03 8.11 -2.39 -0.02 1.01 16 31 H 0.09 1.41 6.37 -2.39 -0.02 1.40 16 32 H 0.11 1.15 8.14 -2.38 -0.02 1.13 16 33 H 0.11 1.03 8.14 -2.38 -0.02 1.01 16 34 H 0.08 1.31 8.14 -2.39 -0.02 1.29 16 35 H 0.11 2.33 7.40 -2.39 -0.02 2.31 16 36 H 0.11 2.29 8.11 -2.39 -0.02 2.27 16 37 H 0.05 1.87 8.10 -2.39 -0.02 1.85 16 38 H 0.05 1.81 8.10 -2.38 -0.02 1.79 16 39 H 0.05 2.14 8.14 -2.39 -0.02 2.12 16 40 H 0.06 2.21 8.14 -2.39 -0.02 2.19 16 41 H 0.01 0.71 7.20 -2.38 -0.02 0.69 16 42 H 0.01 0.57 7.57 -2.39 -0.02 0.55 16 43 H 0.27 15.93 8.31 -92.71 -0.77 15.16 16 Total: -1.00 -75.88 347.40 2.90 -72.98 By element: Atomic # 1 Polarization: 14.80 SS G_CDS: 0.38 Total: 15.18 kcal Atomic # 6 Polarization: -31.84 SS G_CDS: 4.30 Total: -27.54 kcal Atomic # 7 Polarization: -72.33 SS G_CDS: -2.12 Total: -74.45 kcal Atomic # 8 Polarization: -33.07 SS G_CDS: -1.55 Total: -34.61 kcal Atomic # 14 Polarization: 46.55 SS G_CDS: 1.88 Total: 48.44 kcal Total: -75.88 2.90 -72.98 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000588660355.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -30.933 kcal (2) G-P(sol) polarization free energy of solvation -75.883 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -106.816 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.898 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.985 kcal (6) G-S(sol) free energy of system = (1) + (5) -103.918 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds