Wall clock time and date at job start Mon Mar 30 2020 01:22:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 O 1.42900 * 109.46678 * 2 1 4 4 C 1.42903 * 114.00064 * 180.02562 * 3 2 1 5 5 H 1.09004 * 112.84839 * 18.79733 * 4 3 2 6 6 C 1.53780 * 113.61641 * 149.99608 * 4 3 2 7 7 C 1.53783 * 87.07925 * 140.06500 * 6 4 3 8 8 H 1.09003 * 113.61232 * 89.20047 * 7 6 4 9 9 N 1.46496 * 113.61323 * 220.01651 * 7 6 4 10 10 C 1.34777 * 120.00271 * 204.99760 * 9 7 6 11 11 O 1.21278 * 119.99854 * 0.02562 * 10 9 7 12 12 C 1.50703 * 120.00161 * 180.02562 * 10 9 7 13 13 C 1.53000 * 109.46912 * 180.02562 * 12 10 9 14 14 C 1.53001 * 109.46886 * 180.02562 * 13 12 10 15 15 C 1.53000 * 109.46886 * 180.02562 * 14 13 12 16 16 C 1.50703 * 109.46912 * 179.97438 * 15 14 13 17 17 H 1.08009 * 120.00339 * 0.02562 * 16 15 14 18 18 C 1.37874 * 120.00310 * 179.97438 * 16 15 14 19 19 N 1.31516 * 120.00776 * 180.02562 * 18 16 15 20 20 Si 1.86804 * 119.99696 * 0.02562 * 18 16 15 21 21 H 1.48504 * 109.47265 * 89.99852 * 20 18 16 22 22 H 1.48502 * 109.47140 * 209.99881 * 20 18 16 23 23 H 1.48501 * 109.46982 * 329.99994 * 20 18 16 24 24 C 1.53781 * 87.08297 * 334.56771 * 7 6 4 25 25 H 1.08991 * 109.47516 * 60.00692 * 1 2 3 26 26 H 1.09008 * 109.46649 * 180.02562 * 1 2 3 27 27 H 1.09004 * 109.47352 * 300.00144 * 1 2 3 28 28 H 1.08995 * 109.47140 * 239.99772 * 2 1 3 29 29 H 1.09003 * 109.47106 * 119.99206 * 2 1 3 30 30 H 1.09002 * 113.61383 * 25.51607 * 6 4 3 31 31 H 1.09002 * 113.68732 * 254.62076 * 6 4 3 32 32 H 0.97005 * 120.00266 * 25.00343 * 9 7 6 33 33 H 1.09002 * 109.47152 * 60.00245 * 12 10 9 34 34 H 1.09001 * 109.46980 * 300.00345 * 12 10 9 35 35 H 1.09001 * 109.47194 * 299.99742 * 13 12 10 36 36 H 1.08992 * 109.47399 * 59.99914 * 13 12 10 37 37 H 1.09001 * 109.47109 * 299.99380 * 14 13 12 38 38 H 1.09002 * 109.47508 * 59.99571 * 14 13 12 39 39 H 1.08992 * 109.47098 * 299.99158 * 15 14 13 40 40 H 1.09001 * 109.47583 * 60.00267 * 15 14 13 41 41 H 0.96996 * 120.00667 * 180.02562 * 19 18 16 42 42 H 1.09000 * 113.61499 * 139.97811 * 24 7 6 43 43 H 1.09000 * 113.61078 * 270.88680 * 24 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0062 1.3473 0.0000 4 6 3.4308 1.4603 -0.0006 5 1 3.9278 0.5458 -0.3246 6 6 3.9482 2.7254 -0.7052 7 6 4.9912 2.8303 0.4200 8 1 5.9153 2.2916 0.2102 9 7 5.2239 4.2021 0.8784 10 6 6.3979 4.5305 1.4533 11 8 7.2618 3.6905 1.5906 12 6 6.6370 5.9415 1.9255 13 6 8.0369 6.0453 2.5341 14 6 8.2794 7.4777 3.0141 15 6 9.6795 7.5815 3.6222 16 6 9.9186 8.9926 4.0944 17 1 9.1488 9.7404 3.9733 18 6 11.1197 9.3287 4.6819 19 7 11.3283 10.5600 5.0945 20 14 12.4510 8.0352 4.8921 21 1 13.3252 8.0250 3.6916 22 1 13.2640 8.3523 6.0937 23 1 11.8222 6.7002 5.0579 24 6 4.0047 2.0454 1.3006 25 1 -0.3634 0.5137 -0.8900 26 1 -0.3633 -1.0278 0.0005 27 1 -0.3634 0.5139 0.8900 28 1 1.8933 -0.5138 -0.8899 29 1 1.8934 -0.5137 0.8901 30 1 3.2302 3.5455 -0.7128 31 1 4.3823 2.5337 -1.6865 32 1 4.5330 4.8740 0.7684 33 1 5.8930 6.2040 2.6776 34 1 6.5568 6.6258 1.0808 35 1 8.1175 5.3609 3.3787 36 1 8.7806 5.7830 1.7818 37 1 8.1987 8.1623 2.1698 38 1 7.5356 7.7396 3.7666 39 1 9.7606 6.8970 4.4664 40 1 10.4230 7.3199 2.8693 41 1 12.1735 10.7965 5.5075 42 1 4.4843 1.3032 1.9388 43 1 3.3022 2.6796 1.8413 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000590913693.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:22:10 Heat of formation + Delta-G solvation = -92.160086 kcal Electronic energy + Delta-G solvation = -19682.498697 eV Core-core repulsion = 16534.487178 eV Total energy + Delta-G solvation = -3148.011519 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 269.178 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -40.41951 -39.04176 -36.87922 -34.98837 -33.40271 -32.51447 -31.27444 -30.05026 -26.26821 -26.14245 -24.28156 -23.21335 -21.97043 -20.55312 -20.01619 -19.95269 -17.66235 -16.91753 -16.55398 -16.12676 -15.96005 -15.70365 -15.38903 -14.30375 -14.19484 -14.08200 -13.68356 -13.37853 -12.98329 -12.87068 -12.63018 -12.49437 -12.15955 -12.03147 -11.90932 -11.73204 -11.43375 -11.36653 -11.17841 -11.08758 -10.71534 -10.51586 -9.95114 -9.85088 -9.78969 -9.62543 -9.38822 -9.16669 -9.09863 -8.47713 -5.98880 -3.96286 2.65539 2.94284 3.36577 3.43443 3.44676 3.49745 4.09650 4.15794 4.43551 4.46867 4.51609 4.63096 4.74823 4.84012 4.91900 4.99944 5.22728 5.26886 5.32273 5.34502 5.34889 5.36438 5.44815 5.57203 5.60542 5.66108 5.74950 5.87360 6.05734 6.17886 6.33179 6.44999 6.70874 6.83731 6.84924 7.01534 7.40164 7.41263 7.53208 7.86590 8.22237 8.60115 9.06117 9.64517 11.14594 Molecular weight = 269.18amu Principal moments of inertia in cm(-1) A = 0.058199 B = 0.002278 C = 0.002247 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 480.994784 B =12286.616825 C =12455.704860 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C 0.055 3.945 3 O -0.374 6.374 4 C 0.065 3.935 5 H 0.090 0.910 6 C -0.143 4.143 7 C 0.125 3.875 8 H 0.117 0.883 9 N -0.725 5.725 10 C 0.514 3.486 11 O -0.538 6.538 12 C -0.140 4.140 13 C -0.106 4.106 14 C -0.103 4.103 15 C -0.016 4.016 16 C -0.519 4.519 17 H 0.071 0.929 18 C 0.064 3.936 19 N -0.906 5.906 20 Si 0.880 3.120 21 H -0.277 1.277 22 H -0.289 1.289 23 H -0.265 1.265 24 C -0.168 4.168 25 H 0.062 0.938 26 H 0.070 0.930 27 H 0.063 0.937 28 H 0.048 0.952 29 H 0.049 0.951 30 H 0.096 0.904 31 H 0.079 0.921 32 H 0.402 0.598 33 H 0.092 0.908 34 H 0.092 0.908 35 H 0.063 0.937 36 H 0.063 0.937 37 H 0.053 0.947 38 H 0.053 0.947 39 H 0.016 0.984 40 H 0.011 0.989 41 H 0.262 0.738 42 H 0.074 0.926 43 H 0.094 0.906 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.405 -20.838 -12.752 32.481 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.022 4.022 3 O -0.293 6.293 4 C 0.007 3.993 5 H 0.108 0.892 6 C -0.182 4.182 7 C 0.019 3.981 8 H 0.134 0.866 9 N -0.377 5.377 10 C 0.302 3.698 11 O -0.414 6.414 12 C -0.180 4.180 13 C -0.144 4.144 14 C -0.141 4.141 15 C -0.053 4.053 16 C -0.557 4.557 17 H 0.089 0.911 18 C -0.136 4.136 19 N -0.545 5.545 20 Si 0.707 3.293 21 H -0.203 1.203 22 H -0.215 1.215 23 H -0.189 1.189 24 C -0.207 4.207 25 H 0.081 0.919 26 H 0.089 0.911 27 H 0.082 0.918 28 H 0.067 0.933 29 H 0.067 0.933 30 H 0.114 0.886 31 H 0.098 0.902 32 H 0.236 0.764 33 H 0.110 0.890 34 H 0.111 0.889 35 H 0.082 0.918 36 H 0.082 0.918 37 H 0.071 0.929 38 H 0.072 0.928 39 H 0.034 0.966 40 H 0.029 0.971 41 H 0.072 0.928 42 H 0.092 0.908 43 H 0.112 0.888 Dipole moment (debyes) X Y Z Total from point charges -20.751 -21.170 -12.559 32.195 hybrid contribution 0.534 -0.472 0.118 0.723 sum -20.217 -21.642 -12.441 32.123 Atomic orbital electron populations 1.21753 0.93737 1.02287 1.03172 1.22526 0.95652 0.83907 1.00076 1.87949 1.20343 1.26376 1.94595 1.23427 0.81299 0.97779 0.96826 0.89187 1.23618 0.97696 0.98349 0.98497 1.22113 0.97700 0.83843 0.94451 0.86558 1.46008 1.17799 1.11283 1.62648 1.21133 0.81045 0.91318 0.76350 1.90689 1.43891 1.51742 1.55074 1.21786 1.01391 0.92420 1.02356 1.21479 0.93300 0.99003 1.00624 1.21481 0.99573 0.93244 0.99755 1.19580 0.92511 0.97596 0.95633 1.21194 1.01433 0.94434 1.38658 0.91107 1.25044 0.98382 0.95191 0.95018 1.69920 1.24990 1.18070 1.41565 0.86773 0.81980 0.82854 0.77681 1.20326 1.21464 1.18909 1.24016 0.98707 1.00373 0.97647 0.91851 0.91115 0.91804 0.93350 0.93302 0.88565 0.90197 0.76371 0.88953 0.88940 0.91826 0.91817 0.92859 0.92835 0.96619 0.97050 0.92836 0.90760 0.88784 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.79 10.28 37.16 0.38 -0.41 16 2 C 0.05 0.34 6.50 37.16 0.24 0.58 16 3 O -0.37 -3.16 10.36 -35.23 -0.36 -3.52 16 4 C 0.07 0.48 4.31 -25.92 -0.11 0.36 16 5 H 0.09 0.54 7.87 -51.93 -0.41 0.13 16 6 C -0.14 -1.00 7.66 -25.92 -0.20 -1.20 16 7 C 0.12 1.11 4.24 -67.12 -0.28 0.83 16 8 H 0.12 1.21 7.46 -51.93 -0.39 0.82 16 9 N -0.73 -6.97 5.35 -53.02 -0.28 -7.25 16 10 C 0.51 6.83 7.83 -10.98 -0.09 6.75 16 11 O -0.54 -9.38 15.58 5.56 0.09 -9.30 16 12 C -0.14 -1.77 5.70 -27.88 -0.16 -1.93 16 13 C -0.11 -1.80 4.50 -26.73 -0.12 -1.92 16 14 C -0.10 -2.05 5.15 -26.73 -0.14 -2.18 16 15 C -0.02 -0.39 4.04 -27.88 -0.11 -0.51 16 16 C -0.52 -15.23 9.66 -34.44 -0.33 -15.56 16 17 H 0.07 2.20 7.99 -52.48 -0.42 1.79 16 18 C 0.06 1.93 5.47 -17.82 -0.10 1.83 16 19 N -0.91 -28.55 13.96 55.43 0.77 -27.77 16 20 Si 0.88 22.52 27.47 -169.99 -4.67 17.85 16 21 H -0.28 -6.97 7.11 56.52 0.40 -6.57 16 22 H -0.29 -7.27 7.11 56.52 0.40 -6.87 16 23 H -0.26 -6.58 6.54 56.52 0.37 -6.21 16 24 C -0.17 -1.40 7.71 -25.92 -0.20 -1.60 16 25 H 0.06 0.34 8.14 -51.93 -0.42 -0.08 16 26 H 0.07 0.25 8.14 -51.92 -0.42 -0.17 16 27 H 0.06 0.36 8.14 -51.93 -0.42 -0.06 16 28 H 0.05 0.25 8.14 -51.93 -0.42 -0.17 16 29 H 0.05 0.28 8.14 -51.93 -0.42 -0.14 16 30 H 0.10 0.65 8.12 -51.93 -0.42 0.22 16 31 H 0.08 0.49 8.14 -51.93 -0.42 0.07 16 32 H 0.40 2.78 8.73 -40.82 -0.36 2.42 16 33 H 0.09 1.01 8.14 -51.93 -0.42 0.59 16 34 H 0.09 1.00 8.14 -51.93 -0.42 0.58 16 35 H 0.06 1.14 8.10 -51.93 -0.42 0.72 16 36 H 0.06 1.14 8.10 -51.93 -0.42 0.72 16 37 H 0.05 1.03 8.14 -51.93 -0.42 0.61 16 38 H 0.05 1.04 8.14 -51.93 -0.42 0.62 16 39 H 0.02 0.39 7.20 -51.93 -0.37 0.02 16 40 H 0.01 0.28 7.57 -51.93 -0.39 -0.12 16 41 H 0.26 7.72 8.31 -40.82 -0.34 7.38 16 42 H 0.07 0.64 8.14 -51.93 -0.42 0.22 16 43 H 0.09 0.82 8.14 -51.93 -0.42 0.40 16 LS Contribution 353.68 15.07 5.33 5.33 Total: -1.00 -34.52 353.68 -8.19 -42.71 By element: Atomic # 1 Polarization: 4.75 SS G_CDS: -7.84 Total: -3.09 kcal Atomic # 6 Polarization: -13.73 SS G_CDS: -1.22 Total: -14.95 kcal Atomic # 7 Polarization: -35.52 SS G_CDS: 0.49 Total: -35.03 kcal Atomic # 8 Polarization: -12.54 SS G_CDS: -0.28 Total: -12.82 kcal Atomic # 14 Polarization: 22.52 SS G_CDS: -4.67 Total: 17.85 kcal Total LS contribution 5.33 Total: 5.33 kcal Total: -34.52 -8.19 -42.71 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000590913693.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -49.449 kcal (2) G-P(sol) polarization free energy of solvation -34.524 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -83.974 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.186 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.711 kcal (6) G-S(sol) free energy of system = (1) + (5) -92.160 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds