Wall clock time and date at job start Mon Mar 30 2020 01:22:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 O 1.42900 * 109.46678 * 2 1 4 4 C 1.42903 * 114.00064 * 180.02562 * 3 2 1 5 5 H 1.09004 * 112.84839 * 18.79733 * 4 3 2 6 6 C 1.53780 * 113.61641 * 149.99608 * 4 3 2 7 7 C 1.53783 * 87.07925 * 140.06500 * 6 4 3 8 8 H 1.09003 * 113.61232 * 89.20047 * 7 6 4 9 9 N 1.46496 * 113.61323 * 220.01651 * 7 6 4 10 10 C 1.34777 * 120.00271 * 204.99760 * 9 7 6 11 11 O 1.21278 * 119.99854 * 0.02562 * 10 9 7 12 12 C 1.50703 * 120.00161 * 180.02562 * 10 9 7 13 13 C 1.53000 * 109.46912 * 180.02562 * 12 10 9 14 14 C 1.53001 * 109.46886 * 180.02562 * 13 12 10 15 15 C 1.53000 * 109.46886 * 180.02562 * 14 13 12 16 16 C 1.50703 * 109.46912 * 179.97438 * 15 14 13 17 17 H 1.08009 * 120.00339 * 0.02562 * 16 15 14 18 18 C 1.37874 * 120.00310 * 179.97438 * 16 15 14 19 19 N 1.31516 * 120.00776 * 180.02562 * 18 16 15 20 20 Si 1.86804 * 119.99696 * 0.02562 * 18 16 15 21 21 H 1.48504 * 109.47265 * 89.99852 * 20 18 16 22 22 H 1.48502 * 109.47140 * 209.99881 * 20 18 16 23 23 H 1.48501 * 109.46982 * 329.99994 * 20 18 16 24 24 C 1.53781 * 87.08297 * 334.56771 * 7 6 4 25 25 H 1.08991 * 109.47516 * 60.00692 * 1 2 3 26 26 H 1.09008 * 109.46649 * 180.02562 * 1 2 3 27 27 H 1.09004 * 109.47352 * 300.00144 * 1 2 3 28 28 H 1.08995 * 109.47140 * 239.99772 * 2 1 3 29 29 H 1.09003 * 109.47106 * 119.99206 * 2 1 3 30 30 H 1.09002 * 113.61383 * 25.51607 * 6 4 3 31 31 H 1.09002 * 113.68732 * 254.62076 * 6 4 3 32 32 H 0.97005 * 120.00266 * 25.00343 * 9 7 6 33 33 H 1.09002 * 109.47152 * 60.00245 * 12 10 9 34 34 H 1.09001 * 109.46980 * 300.00345 * 12 10 9 35 35 H 1.09001 * 109.47194 * 299.99742 * 13 12 10 36 36 H 1.08992 * 109.47399 * 59.99914 * 13 12 10 37 37 H 1.09001 * 109.47109 * 299.99380 * 14 13 12 38 38 H 1.09002 * 109.47508 * 59.99571 * 14 13 12 39 39 H 1.08992 * 109.47098 * 299.99158 * 15 14 13 40 40 H 1.09001 * 109.47583 * 60.00267 * 15 14 13 41 41 H 0.96996 * 120.00667 * 180.02562 * 19 18 16 42 42 H 1.09000 * 113.61499 * 139.97811 * 24 7 6 43 43 H 1.09000 * 113.61078 * 270.88680 * 24 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0062 1.3473 0.0000 4 6 3.4308 1.4603 -0.0006 5 1 3.9278 0.5458 -0.3246 6 6 3.9482 2.7254 -0.7052 7 6 4.9912 2.8303 0.4200 8 1 5.9153 2.2916 0.2102 9 7 5.2239 4.2021 0.8784 10 6 6.3979 4.5305 1.4533 11 8 7.2618 3.6905 1.5906 12 6 6.6370 5.9415 1.9255 13 6 8.0369 6.0453 2.5341 14 6 8.2794 7.4777 3.0141 15 6 9.6795 7.5815 3.6222 16 6 9.9186 8.9926 4.0944 17 1 9.1488 9.7404 3.9733 18 6 11.1197 9.3287 4.6819 19 7 11.3283 10.5600 5.0945 20 14 12.4510 8.0352 4.8921 21 1 13.3252 8.0250 3.6916 22 1 13.2640 8.3523 6.0937 23 1 11.8222 6.7002 5.0579 24 6 4.0047 2.0454 1.3006 25 1 -0.3634 0.5137 -0.8900 26 1 -0.3633 -1.0278 0.0005 27 1 -0.3634 0.5139 0.8900 28 1 1.8933 -0.5138 -0.8899 29 1 1.8934 -0.5137 0.8901 30 1 3.2302 3.5455 -0.7128 31 1 4.3823 2.5337 -1.6865 32 1 4.5330 4.8740 0.7684 33 1 5.8930 6.2040 2.6776 34 1 6.5568 6.6258 1.0808 35 1 8.1175 5.3609 3.3787 36 1 8.7806 5.7830 1.7818 37 1 8.1987 8.1623 2.1698 38 1 7.5356 7.7396 3.7666 39 1 9.7606 6.8970 4.4664 40 1 10.4230 7.3199 2.8693 41 1 12.1735 10.7965 5.5075 42 1 4.4843 1.3032 1.9388 43 1 3.3022 2.6796 1.8413 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000590913693.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:22:09 Heat of formation + Delta-G solvation = -115.298459 kcal Electronic energy + Delta-G solvation = -19683.502052 eV Core-core repulsion = 16534.487178 eV Total energy + Delta-G solvation = -3149.014875 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 269.178 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -41.22643 -39.88120 -37.55274 -36.61496 -34.61341 -34.22017 -31.95717 -31.54636 -27.85557 -26.75274 -25.28888 -23.76283 -23.38202 -21.74944 -21.42232 -20.76449 -18.85699 -18.28726 -17.84073 -16.90294 -16.74655 -16.48812 -16.33837 -16.12875 -15.51878 -15.03725 -14.73942 -14.47975 -14.16537 -13.76627 -13.68924 -13.49382 -13.45949 -13.40218 -12.88403 -12.71280 -12.45359 -12.32562 -12.10284 -12.05531 -11.91723 -11.75636 -11.74456 -11.50525 -11.33943 -11.25917 -10.76001 -10.74997 -10.40342 -10.01194 -8.29523 -6.32654 1.34778 1.36293 1.49252 1.64779 2.16498 2.36037 2.85925 3.05752 3.46988 3.56150 3.82147 3.85662 3.91683 4.05207 4.17105 4.20280 4.27458 4.41847 4.51198 4.62093 4.66226 4.73397 4.74825 4.78555 4.84881 4.87512 4.95799 5.00253 5.05211 5.10574 5.15879 5.21182 5.28360 5.30358 5.55747 5.61862 5.66341 5.69068 6.29682 6.31737 6.58379 6.75280 7.29021 7.32190 8.87003 Molecular weight = 269.18amu Principal moments of inertia in cm(-1) A = 0.058199 B = 0.002278 C = 0.002247 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 480.994784 B =12286.616825 C =12455.704860 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C 0.048 3.952 3 O -0.391 6.391 4 C 0.068 3.932 5 H 0.103 0.897 6 C -0.131 4.131 7 C 0.117 3.883 8 H 0.101 0.899 9 N -0.708 5.708 10 C 0.514 3.486 11 O -0.586 6.586 12 C -0.132 4.132 13 C -0.097 4.097 14 C -0.094 4.094 15 C -0.017 4.017 16 C -0.531 4.531 17 H 0.037 0.963 18 C 0.003 3.997 19 N -0.950 5.950 20 Si 0.948 3.052 21 H -0.267 1.267 22 H -0.281 1.281 23 H -0.253 1.253 24 C -0.168 4.168 25 H 0.060 0.940 26 H 0.087 0.913 27 H 0.056 0.944 28 H 0.060 0.940 29 H 0.052 0.948 30 H 0.102 0.898 31 H 0.091 0.909 32 H 0.417 0.583 33 H 0.115 0.885 34 H 0.117 0.883 35 H 0.050 0.950 36 H 0.052 0.948 37 H 0.057 0.943 38 H 0.056 0.944 39 H 0.013 0.987 40 H 0.013 0.987 41 H 0.266 0.734 42 H 0.067 0.933 43 H 0.091 0.909 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.399 -22.466 -13.814 34.602 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.029 4.029 3 O -0.310 6.310 4 C 0.009 3.991 5 H 0.121 0.879 6 C -0.169 4.169 7 C 0.011 3.989 8 H 0.119 0.881 9 N -0.360 5.360 10 C 0.302 3.698 11 O -0.466 6.466 12 C -0.172 4.172 13 C -0.136 4.136 14 C -0.132 4.132 15 C -0.055 4.055 16 C -0.569 4.569 17 H 0.055 0.945 18 C -0.193 4.193 19 N -0.591 5.591 20 Si 0.772 3.228 21 H -0.192 1.192 22 H -0.207 1.207 23 H -0.176 1.176 24 C -0.207 4.207 25 H 0.079 0.921 26 H 0.106 0.894 27 H 0.075 0.925 28 H 0.078 0.922 29 H 0.070 0.930 30 H 0.121 0.879 31 H 0.109 0.891 32 H 0.255 0.745 33 H 0.133 0.867 34 H 0.135 0.865 35 H 0.069 0.931 36 H 0.071 0.929 37 H 0.076 0.924 38 H 0.075 0.925 39 H 0.032 0.968 40 H 0.031 0.969 41 H 0.075 0.925 42 H 0.086 0.914 43 H 0.109 0.891 Dipole moment (debyes) X Y Z Total from point charges -21.808 -22.794 -13.645 34.371 hybrid contribution 0.752 0.083 0.448 0.879 sum -21.056 -22.711 -13.197 33.665 Atomic orbital electron populations 1.21771 0.93135 1.03269 1.02650 1.22706 0.96230 0.83134 1.00790 1.87924 1.20736 1.27752 1.94633 1.23452 0.81137 0.98507 0.95973 0.87878 1.23547 0.96765 0.98362 0.98212 1.22172 0.97624 0.83236 0.95838 0.88115 1.45864 1.16997 1.12099 1.61037 1.21186 0.81401 0.91033 0.76178 1.90677 1.45657 1.52965 1.57346 1.21693 0.99072 0.92750 1.03679 1.21278 0.95971 0.96286 1.00026 1.21348 0.96664 0.95436 0.99759 1.19582 0.95672 0.94503 0.95731 1.21556 1.00720 0.96038 1.38607 0.94484 1.25999 1.01135 0.97454 0.94738 1.70058 1.26008 1.20295 1.42753 0.85689 0.78815 0.80192 0.78152 1.19177 1.20701 1.17645 1.23989 0.98428 1.00183 0.98062 0.92120 0.89430 0.92535 0.92208 0.93002 0.87935 0.89052 0.74529 0.86716 0.86501 0.93123 0.92906 0.92395 0.92504 0.96823 0.96856 0.92517 0.91446 0.89084 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.34 10.28 71.98 0.74 -0.60 16 2 C 0.05 0.51 6.50 71.98 0.47 0.98 16 3 O -0.39 -5.95 10.36 -148.98 -1.54 -7.49 16 4 C 0.07 0.87 4.31 31.12 0.13 1.00 16 5 H 0.10 1.04 7.87 -2.39 -0.02 1.02 16 6 C -0.13 -1.53 7.66 31.12 0.24 -1.29 16 7 C 0.12 1.92 4.24 45.52 0.19 2.11 16 8 H 0.10 2.03 7.46 -2.39 -0.02 2.02 16 9 N -0.71 -12.20 5.35 -440.04 -2.36 -14.56 16 10 C 0.51 12.87 7.83 87.66 0.69 13.56 16 11 O -0.59 -20.22 15.58 -3.02 -0.05 -20.27 16 12 C -0.13 -3.04 5.70 29.85 0.17 -2.87 16 13 C -0.10 -3.18 4.50 30.59 0.14 -3.05 16 14 C -0.09 -3.66 5.15 30.59 0.16 -3.50 16 15 C -0.02 -0.86 4.04 29.85 0.12 -0.74 16 16 C -0.53 -31.57 9.66 25.60 0.25 -31.32 16 17 H 0.04 2.37 7.99 -2.91 -0.02 2.35 16 18 C 0.00 0.20 5.47 84.65 0.46 0.67 16 19 N -0.95 -60.82 13.96 21.45 0.30 -60.53 16 20 Si 0.95 46.25 27.47 68.60 1.88 48.13 16 21 H -0.27 -12.50 7.11 99.48 0.71 -11.79 16 22 H -0.28 -13.31 7.11 99.48 0.71 -12.61 16 23 H -0.25 -11.75 6.54 99.48 0.65 -11.09 16 24 C -0.17 -2.59 7.71 31.12 0.24 -2.35 16 25 H 0.06 0.57 8.14 -2.39 -0.02 0.55 16 26 H 0.09 0.46 8.14 -2.38 -0.02 0.44 16 27 H 0.06 0.58 8.14 -2.39 -0.02 0.56 16 28 H 0.06 0.50 8.14 -2.39 -0.02 0.48 16 29 H 0.05 0.52 8.14 -2.39 -0.02 0.50 16 30 H 0.10 1.10 8.12 -2.39 -0.02 1.08 16 31 H 0.09 0.89 8.14 -2.39 -0.02 0.87 16 32 H 0.42 4.60 8.73 -92.70 -0.81 3.79 16 33 H 0.11 2.15 8.14 -2.39 -0.02 2.13 16 34 H 0.12 2.15 8.14 -2.39 -0.02 2.13 16 35 H 0.05 1.78 8.10 -2.39 -0.02 1.76 16 36 H 0.05 1.83 8.10 -2.39 -0.02 1.81 16 37 H 0.06 2.17 8.14 -2.39 -0.02 2.15 16 38 H 0.06 2.14 8.14 -2.39 -0.02 2.13 16 39 H 0.01 0.66 7.20 -2.39 -0.02 0.65 16 40 H 0.01 0.64 7.57 -2.39 -0.02 0.62 16 41 H 0.27 15.86 8.31 -92.71 -0.77 15.09 16 42 H 0.07 1.13 8.14 -2.39 -0.02 1.11 16 43 H 0.09 1.47 8.14 -2.39 -0.02 1.45 16 Total: -1.00 -75.25 353.68 2.33 -72.92 By element: Atomic # 1 Polarization: 9.09 SS G_CDS: 0.10 Total: 9.19 kcal Atomic # 6 Polarization: -31.40 SS G_CDS: 4.00 Total: -27.40 kcal Atomic # 7 Polarization: -73.02 SS G_CDS: -2.06 Total: -75.08 kcal Atomic # 8 Polarization: -26.17 SS G_CDS: -1.59 Total: -27.76 kcal Atomic # 14 Polarization: 46.25 SS G_CDS: 1.88 Total: 48.13 kcal Total: -75.25 2.33 -72.92 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000590913693.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -42.382 kcal (2) G-P(sol) polarization free energy of solvation -75.248 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -117.631 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.332 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.916 kcal (6) G-S(sol) free energy of system = (1) + (5) -115.298 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds