Wall clock time and date at job start Mon Mar 30 2020 00:52:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 H 1.09001 * 109.46998 * 2 1 4 4 O 1.42895 * 109.47036 * 120.00035 * 2 1 3 5 5 C 1.42896 * 114.00484 * 270.00415 * 4 2 1 6 6 C 1.52991 * 109.47541 * 180.02562 * 5 4 2 7 7 C 1.53007 * 117.50002 * 243.62131 * 6 5 4 8 8 C 1.52999 * 117.50355 * 174.99744 * 6 5 4 9 9 C 1.50697 * 109.47239 * 240.00627 * 2 1 3 10 10 O 1.21282 * 119.99755 * 244.99709 * 9 2 1 11 11 N 1.34776 * 120.00514 * 64.99692 * 9 2 1 12 12 C 1.46500 * 120.00522 * 179.97438 * 11 9 2 13 13 C 1.52997 * 109.47442 * 179.97438 * 12 11 9 14 14 C 1.52997 * 109.47331 * 300.00334 * 13 12 11 15 15 C 1.53001 * 109.46695 * 59.99896 * 13 12 11 16 16 C 1.50701 * 109.47161 * 180.02562 * 13 12 11 17 17 H 1.07997 * 119.99561 * 0.02562 * 16 13 12 18 18 C 1.37876 * 119.99815 * 180.02562 * 16 13 12 19 19 N 1.31510 * 120.00133 * 359.97438 * 18 16 13 20 20 Si 1.86797 * 119.99694 * 179.97438 * 18 16 13 21 21 H 1.48495 * 109.47347 * 359.97438 * 20 18 16 22 22 H 1.48501 * 109.47044 * 119.99997 * 20 18 16 23 23 H 1.48506 * 109.47086 * 239.99416 * 20 18 16 24 24 H 1.09001 * 109.47002 * 179.97438 * 1 2 3 25 25 H 1.08993 * 109.46955 * 299.99880 * 1 2 3 26 26 H 1.09000 * 109.47050 * 59.99708 * 1 2 3 27 27 H 1.09001 * 109.46884 * 300.00129 * 5 4 2 28 28 H 1.08994 * 109.47236 * 59.99272 * 5 4 2 29 29 H 1.09008 * 115.54969 * 29.32759 * 6 5 4 30 30 H 1.08994 * 117.49476 * 359.97438 * 7 6 5 31 31 H 1.08999 * 117.49907 * 145.01895 * 7 6 5 32 32 H 1.08997 * 117.50141 * 214.97615 * 8 6 5 33 33 H 1.08998 * 117.49481 * 359.97438 * 8 6 5 34 34 H 0.97002 * 119.99518 * 0.02562 * 11 9 2 35 35 H 1.09001 * 109.47128 * 300.00639 * 12 11 9 36 36 H 1.09007 * 109.46588 * 60.00161 * 12 11 9 37 37 H 1.09004 * 109.47198 * 59.99700 * 14 13 12 38 38 H 1.09001 * 109.47187 * 179.97438 * 14 13 12 39 39 H 1.09007 * 109.47277 * 300.00029 * 14 13 12 40 40 H 1.09000 * 109.47104 * 60.00548 * 15 13 12 41 41 H 1.09001 * 109.46924 * 179.97438 * 15 13 12 42 42 H 1.08996 * 109.47541 * 299.99744 * 15 13 12 43 43 H 0.97006 * 120.00348 * 180.02562 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 8 2.0064 -0.6736 1.1667 5 6 2.2000 0.1828 2.2941 6 6 2.7090 -0.6407 3.4788 7 6 1.8136 -0.7260 4.7166 8 6 3.0909 0.1155 4.7528 9 6 2.0324 -0.7103 -1.2305 10 8 2.6531 -1.7465 -1.1216 11 7 1.7920 -0.1940 -2.4520 12 6 2.2808 -0.8842 -3.6482 13 6 1.8754 -0.0944 -4.8943 14 6 0.3505 0.0142 -4.9556 15 6 2.4844 1.3077 -4.8298 16 6 2.3778 -0.8047 -6.1248 17 1 2.9305 -1.7275 -6.0277 18 6 2.1317 -0.2766 -7.3744 19 7 1.4581 0.8467 -7.4925 20 14 2.7550 -1.1568 -8.8996 21 1 3.4789 -2.3897 -8.4985 22 1 1.6053 -1.5174 -9.7676 23 1 3.6767 -0.2624 -9.6453 24 1 -0.3633 -1.0277 -0.0005 25 1 -0.3633 0.5138 0.8899 26 1 -0.3633 0.5139 -0.8900 27 1 2.9319 0.9512 2.0451 28 1 1.2538 0.6546 2.5588 29 1 3.2971 -1.5216 3.2209 30 1 0.8622 -0.1951 4.6869 31 1 1.8124 -1.6631 5.2732 32 1 3.9299 -0.2680 5.3334 33 1 2.9800 1.1998 4.7468 34 1 1.2959 0.6350 -2.5391 35 1 3.3672 -0.9620 -3.6044 36 1 1.8466 -1.8830 -3.6943 37 1 -0.0132 0.5278 -4.0655 38 1 0.0617 0.5773 -5.8431 39 1 -0.0834 -0.9847 -5.0014 40 1 3.5707 1.2304 -4.7862 41 1 2.1959 1.8703 -5.7177 42 1 2.1206 1.8213 -3.9399 43 1 1.2847 1.2181 -8.3717 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000590916086.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:52:34 Heat of formation + Delta-G solvation = -71.273667 kcal Electronic energy + Delta-G solvation = -20921.038898 eV Core-core repulsion = 17773.933082 eV Total energy + Delta-G solvation = -3147.105816 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 269.178 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -39.69045 -38.28321 -36.79841 -36.08714 -33.37758 -31.69724 -30.46656 -27.23298 -25.82517 -25.73954 -25.14516 -23.38174 -22.64037 -20.99978 -19.97284 -18.82692 -17.29263 -17.04275 -15.93905 -15.70832 -15.35825 -14.89421 -14.73955 -14.41719 -14.32930 -13.53444 -13.09959 -12.99016 -12.84344 -12.43064 -12.30287 -12.19556 -11.83599 -11.70933 -11.37951 -11.22243 -11.08187 -10.88211 -10.71538 -10.66559 -10.53114 -10.39686 -10.20592 -9.75994 -9.64747 -9.43956 -9.09795 -8.78156 -8.46123 -8.31506 -6.03149 -4.12989 3.02447 3.06242 3.26906 3.35610 3.40684 3.56213 4.01204 4.39922 4.56366 4.62664 4.79347 4.83965 4.99520 5.08569 5.10981 5.23857 5.25951 5.34573 5.43232 5.54142 5.60282 5.64881 5.82006 5.98257 6.05164 6.22172 6.32723 6.49513 6.77576 6.80518 6.90400 7.00166 7.00781 7.09953 7.34750 7.54355 7.68835 7.99842 8.04243 8.15079 8.37826 8.71084 8.88199 9.52995 10.98341 Molecular weight = 269.18amu Principal moments of inertia in cm(-1) A = 0.047648 B = 0.003231 C = 0.003163 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 587.502739 B = 8665.219670 C = 8850.735529 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C 0.070 3.930 3 H 0.082 0.918 4 O -0.353 6.353 5 C 0.090 3.910 6 C -0.151 4.151 7 C -0.178 4.178 8 C -0.175 4.175 9 C 0.505 3.495 10 O -0.532 6.532 11 N -0.715 5.715 12 C 0.133 3.867 13 C 0.056 3.944 14 C -0.131 4.131 15 C -0.131 4.131 16 C -0.505 4.505 17 H 0.058 0.942 18 C 0.066 3.934 19 N -0.886 5.886 20 Si 0.893 3.107 21 H -0.273 1.273 22 H -0.284 1.284 23 H -0.285 1.285 24 H 0.070 0.930 25 H 0.065 0.935 26 H 0.074 0.926 27 H 0.054 0.946 28 H 0.051 0.949 29 H 0.116 0.884 30 H 0.094 0.906 31 H 0.095 0.905 32 H 0.097 0.903 33 H 0.095 0.905 34 H 0.397 0.603 35 H 0.055 0.945 36 H 0.055 0.945 37 H 0.006 0.994 38 H 0.086 0.914 39 H 0.027 0.973 40 H 0.027 0.973 41 H 0.086 0.914 42 H 0.006 0.994 43 H 0.259 0.741 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.075 3.497 18.481 18.923 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.227 4.227 2 C 0.009 3.991 3 H 0.100 0.900 4 O -0.271 6.271 5 C 0.013 3.987 6 C -0.169 4.169 7 C -0.215 4.215 8 C -0.212 4.212 9 C 0.289 3.711 10 O -0.408 6.408 11 N -0.367 5.367 12 C 0.011 3.989 13 C 0.055 3.945 14 C -0.189 4.189 15 C -0.189 4.189 16 C -0.543 4.543 17 H 0.076 0.924 18 C -0.135 4.135 19 N -0.525 5.525 20 Si 0.721 3.279 21 H -0.197 1.197 22 H -0.211 1.211 23 H -0.211 1.211 24 H 0.090 0.910 25 H 0.084 0.916 26 H 0.093 0.907 27 H 0.072 0.928 28 H 0.069 0.931 29 H 0.134 0.866 30 H 0.113 0.887 31 H 0.114 0.886 32 H 0.116 0.884 33 H 0.113 0.887 34 H 0.232 0.768 35 H 0.073 0.927 36 H 0.073 0.927 37 H 0.025 0.975 38 H 0.104 0.896 39 H 0.046 0.954 40 H 0.046 0.954 41 H 0.104 0.896 42 H 0.025 0.975 43 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges -1.643 2.654 18.405 18.668 hybrid contribution 0.013 0.272 -0.893 0.934 sum -1.631 2.926 17.512 17.829 Atomic orbital electron populations 1.22219 0.93731 1.03855 1.02884 1.21932 0.95016 0.96227 0.85938 0.89983 1.88046 1.86538 1.33861 1.18678 1.22090 0.98878 0.92093 0.85607 1.22129 1.03983 1.02507 0.88284 1.23065 0.94898 1.02113 1.01381 1.22972 0.99303 0.98820 1.00105 1.20248 0.80560 0.85855 0.84432 1.90686 1.40129 1.23412 1.86574 1.46246 1.56964 1.27686 1.05838 1.21734 0.98120 0.95892 0.83179 1.18362 0.93019 0.92535 0.90575 1.21835 0.97383 0.99526 1.00116 1.21836 0.98335 0.98759 0.99963 1.21032 1.34991 1.08309 0.90014 0.92353 1.24878 0.94893 0.94906 0.98862 1.69810 1.40195 1.19253 1.23252 0.86514 0.78595 0.79821 0.82959 1.19739 1.21058 1.21070 0.91046 0.91637 0.90706 0.92818 0.93132 0.86595 0.88716 0.88620 0.88413 0.88702 0.76788 0.92681 0.92651 0.97526 0.89577 0.95384 0.95411 0.89556 0.97533 0.93067 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.90 9.48 37.16 0.35 -1.55 16 2 C 0.07 0.96 3.13 -27.88 -0.09 0.87 16 3 H 0.08 0.91 7.79 -51.93 -0.40 0.51 16 4 O -0.35 -5.24 9.53 -55.09 -0.52 -5.76 16 5 C 0.09 0.97 6.03 37.15 0.22 1.20 16 6 C -0.15 -1.52 6.06 -90.62 -0.55 -2.07 16 7 C -0.18 -1.45 10.18 -26.73 -0.27 -1.72 16 8 C -0.17 -1.34 10.25 -26.73 -0.27 -1.62 16 9 C 0.51 9.15 7.18 -10.99 -0.08 9.07 16 10 O -0.53 -12.00 16.51 -14.30 -0.24 -12.23 16 11 N -0.71 -12.74 4.92 -60.29 -0.30 -13.03 16 12 C 0.13 2.85 4.50 -4.04 -0.02 2.83 16 13 C 0.06 1.28 0.50 -155.66 -0.08 1.20 16 14 C -0.13 -2.91 8.08 37.16 0.30 -2.61 16 15 C -0.13 -2.92 8.08 37.16 0.30 -2.62 16 16 C -0.50 -13.21 8.01 -34.44 -0.28 -13.48 16 17 H 0.06 1.55 7.74 -52.49 -0.41 1.15 16 18 C 0.07 1.72 5.15 -17.82 -0.09 1.63 16 19 N -0.89 -23.48 9.35 55.43 0.52 -22.96 16 20 Si 0.89 20.71 29.54 -169.99 -5.02 15.68 16 21 H -0.27 -6.34 7.11 56.52 0.40 -5.94 16 22 H -0.28 -6.59 7.11 56.52 0.40 -6.19 16 23 H -0.28 -6.59 7.11 56.52 0.40 -6.19 16 24 H 0.07 0.89 8.14 -51.93 -0.42 0.47 16 25 H 0.06 0.59 7.87 -51.93 -0.41 0.18 16 26 H 0.07 0.77 7.93 -51.93 -0.41 0.35 16 27 H 0.05 0.53 8.09 -51.93 -0.42 0.11 16 28 H 0.05 0.46 7.60 -51.93 -0.39 0.06 16 29 H 0.12 1.32 8.14 -51.92 -0.42 0.90 16 30 H 0.09 0.70 8.03 -51.93 -0.42 0.28 16 31 H 0.10 0.72 8.14 -51.93 -0.42 0.30 16 32 H 0.10 0.67 8.14 -51.93 -0.42 0.24 16 33 H 0.09 0.63 8.14 -51.93 -0.42 0.21 16 34 H 0.40 6.22 5.95 -40.82 -0.24 5.98 16 35 H 0.05 1.24 8.14 -51.93 -0.42 0.82 16 36 H 0.06 1.25 8.14 -51.92 -0.42 0.83 16 37 H 0.01 0.11 6.86 -51.93 -0.36 -0.24 16 38 H 0.09 2.12 6.07 -51.93 -0.32 1.80 16 39 H 0.03 0.62 8.14 -51.92 -0.42 0.19 16 40 H 0.03 0.61 8.14 -51.93 -0.42 0.19 16 41 H 0.09 2.13 6.07 -51.93 -0.32 1.81 16 42 H 0.01 0.11 6.86 -51.93 -0.36 -0.24 16 43 H 0.26 6.62 8.31 -40.82 -0.34 6.28 16 LS Contribution 346.23 15.07 5.22 5.22 Total: -1.00 -29.81 346.23 -8.28 -38.09 By element: Atomic # 1 Polarization: 11.25 SS G_CDS: -7.39 Total: 3.86 kcal Atomic # 6 Polarization: -8.31 SS G_CDS: -0.55 Total: -8.86 kcal Atomic # 7 Polarization: -36.21 SS G_CDS: 0.22 Total: -35.99 kcal Atomic # 8 Polarization: -17.24 SS G_CDS: -0.76 Total: -18.00 kcal Atomic # 14 Polarization: 20.71 SS G_CDS: -5.02 Total: 15.68 kcal Total LS contribution 5.22 Total: 5.22 kcal Total: -29.81 -8.28 -38.09 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000590916086.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -33.187 kcal (2) G-P(sol) polarization free energy of solvation -29.807 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -62.994 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.280 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.087 kcal (6) G-S(sol) free energy of system = (1) + (5) -71.274 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds