Wall clock time and date at job start Mon Mar 30 2020 01:15:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 O 1.42901 * 109.47332 * 2 1 4 4 C 1.42894 * 114.00185 * 179.97438 * 3 2 1 5 5 C 1.53782 * 113.61550 * 150.00101 * 4 3 2 6 6 C 1.53784 * 87.08228 * 89.11626 * 5 4 3 7 7 C 1.52999 * 113.61237 * 139.98417 * 6 5 4 8 8 N 1.46899 * 109.46743 * 175.00026 * 7 6 5 9 9 C 1.48539 * 110.99764 * 287.39240 * 8 7 6 10 10 C 1.54942 * 103.22480 * 200.27931 * 9 8 7 11 11 C 1.54596 * 102.92135 * 37.41670 * 10 9 8 12 12 O 1.42901 * 110.39354 * 97.00076 * 11 10 9 13 13 C 1.50701 * 110.30855 * 219.12359 * 11 10 9 14 14 H 1.08002 * 119.99810 * 120.88848 * 13 11 10 15 15 C 1.37878 * 119.99852 * 300.61003 * 13 11 10 16 16 N 1.31508 * 120.00147 * 355.30150 * 15 13 11 17 17 Si 1.86802 * 119.99811 * 175.29476 * 15 13 11 18 18 H 1.48502 * 109.46744 * 94.99925 * 17 15 13 19 19 H 1.48493 * 109.47086 * 215.00189 * 17 15 13 20 20 H 1.48500 * 109.47021 * 335.00108 * 17 15 13 21 21 C 1.47906 * 111.00002 * 169.99868 * 8 7 6 22 22 C 1.53775 * 87.07890 * 25.43229 * 6 5 4 23 23 H 1.09003 * 109.46790 * 59.99932 * 1 2 3 24 24 H 1.08992 * 109.47122 * 180.02562 * 1 2 3 25 25 H 1.09000 * 109.47116 * 299.99952 * 1 2 3 26 26 H 1.09003 * 109.47395 * 239.99598 * 2 1 3 27 27 H 1.09001 * 109.47275 * 119.99875 * 2 1 3 28 28 H 1.09001 * 112.90966 * 18.74641 * 4 3 2 29 29 H 1.08998 * 113.61144 * 334.56782 * 5 4 3 30 30 H 1.08999 * 113.68672 * 203.67557 * 5 4 3 31 31 H 1.08998 * 113.60787 * 270.80286 * 6 5 4 32 32 H 1.08999 * 109.47517 * 55.00223 * 7 6 5 33 33 H 1.09003 * 109.47045 * 294.99517 * 7 6 5 34 34 H 1.08997 * 110.66700 * 318.71535 * 9 8 7 35 35 H 1.09003 * 110.66347 * 81.68068 * 9 8 7 36 36 H 1.09002 * 110.72487 * 279.05630 * 10 9 8 37 37 H 1.09005 * 110.71809 * 155.77256 * 10 9 8 38 38 H 0.96700 * 114.00224 * 57.66027 * 12 11 10 39 39 H 0.96996 * 120.00133 * 180.02562 * 16 15 13 40 40 H 1.08997 * 109.91695 * 26.48914 * 21 8 7 41 41 H 1.08997 * 110.08014 * 265.28574 * 21 8 7 42 42 H 1.09006 * 113.61458 * 89.11937 * 22 6 5 43 43 H 1.09007 * 113.61312 * 220.01539 * 22 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0064 1.3473 0.0000 4 6 3.4309 1.4601 0.0006 5 6 3.9489 2.7251 -0.7039 6 6 3.8391 3.4328 0.6570 7 6 5.0009 4.3848 0.9483 8 7 4.7461 5.0974 2.2073 9 6 3.6756 6.1129 2.0369 10 6 3.9079 7.0762 3.2281 11 6 5.4494 7.1303 3.3333 12 8 5.9546 8.2822 2.6551 13 6 5.8747 7.1472 4.7789 14 1 6.5155 6.3670 5.1624 15 6 5.4503 8.1618 5.6106 16 7 4.7517 9.1633 5.1224 17 14 5.8677 8.1136 7.4307 18 1 7.0990 8.9063 7.6773 19 1 4.7435 8.6892 8.2117 20 1 6.0924 6.7068 7.8499 21 6 5.9449 5.8448 2.6453 22 6 4.0018 2.0466 1.3025 23 1 -0.3633 0.5139 -0.8900 24 1 -0.3633 -1.0276 0.0005 25 1 -0.3633 0.5138 0.8900 26 1 1.8934 -0.5139 -0.8900 27 1 1.8934 -0.5138 0.8900 28 1 3.9291 0.5457 -0.3217 29 1 3.2646 3.1170 -1.4563 30 1 4.9724 2.6355 -1.0681 31 1 2.8645 3.8872 0.8353 32 1 5.0930 5.1050 0.1354 33 1 5.9255 3.8139 1.0346 34 1 3.7912 6.6384 1.0890 35 1 2.6914 5.6488 2.1005 36 1 3.4729 6.6715 4.1419 37 1 3.5012 8.0638 3.0103 38 1 5.5962 9.1192 2.9808 39 1 4.4535 9.8772 5.7074 40 1 6.5599 6.0990 1.7821 41 1 6.5228 5.2460 3.3493 42 1 5.0399 1.7702 1.4875 43 1 3.3603 1.8908 2.1699 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000592154522.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:15:54 Heat of formation + Delta-G solvation = -75.677180 kcal Electronic energy + Delta-G solvation = -21237.623053 eV Core-core repulsion = 18090.326286 eV Total energy + Delta-G solvation = -3147.296767 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 269.178 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -39.70366 -38.17068 -36.38996 -34.43989 -32.06626 -31.21789 -29.91589 -28.04267 -26.43329 -25.61028 -24.11621 -23.00781 -22.21451 -20.29030 -19.51970 -19.04850 -16.99071 -16.61026 -15.78304 -15.36133 -15.30631 -14.90615 -14.65221 -14.01675 -13.79112 -13.53569 -13.26099 -12.77915 -12.63505 -12.43128 -12.17902 -12.03457 -11.79790 -11.60668 -11.40921 -11.21354 -11.12125 -10.88040 -10.56978 -10.43898 -10.41232 -10.33064 -10.16377 -10.00375 -9.75148 -9.46072 -9.08974 -8.50169 -8.05387 -7.66140 -6.13814 -4.18661 3.27530 3.34753 3.39650 3.47452 4.37271 4.47785 4.66252 4.76368 4.87682 4.93035 5.02379 5.13090 5.16736 5.21796 5.26891 5.49831 5.69606 5.71180 5.74182 5.79281 5.81743 5.90477 5.93307 6.00079 6.12672 6.18673 6.22419 6.31759 6.36380 6.51209 6.58155 6.63000 6.99617 7.12266 7.20841 7.37910 7.58007 7.74441 7.82017 7.91769 8.25943 8.82678 9.46086 9.56896 10.94334 Molecular weight = 269.18amu Principal moments of inertia in cm(-1) A = 0.029118 B = 0.003742 C = 0.003582 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 961.371561 B = 7481.478880 C = 7815.627370 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C 0.057 3.943 3 O -0.366 6.366 4 C 0.061 3.939 5 C -0.138 4.138 6 C -0.090 4.090 7 C 0.056 3.944 8 N -0.511 5.511 9 C 0.032 3.968 10 C -0.117 4.117 11 C 0.242 3.758 12 O -0.595 6.595 13 C -0.526 4.526 14 H 0.061 0.939 15 C 0.068 3.932 16 N -0.898 5.898 17 Si 0.898 3.102 18 H -0.281 1.281 19 H -0.285 1.285 20 H -0.272 1.272 21 C 0.054 3.946 22 C -0.143 4.143 23 H 0.062 0.938 24 H 0.069 0.931 25 H 0.064 0.936 26 H 0.045 0.955 27 H 0.048 0.952 28 H 0.068 0.932 29 H 0.072 0.928 30 H 0.090 0.910 31 H 0.093 0.907 32 H 0.030 0.970 33 H 0.067 0.933 34 H 0.031 0.969 35 H 0.064 0.936 36 H 0.067 0.933 37 H 0.063 0.937 38 H 0.380 0.620 39 H 0.265 0.735 40 H 0.033 0.967 41 H 0.077 0.923 42 H 0.086 0.914 43 H 0.073 0.927 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.969 -14.727 -10.314 18.654 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.019 4.019 3 O -0.286 6.286 4 C 0.003 3.997 5 C -0.176 4.176 6 C -0.109 4.109 7 C -0.073 4.073 8 N -0.235 5.235 9 C -0.096 4.096 10 C -0.156 4.156 11 C 0.202 3.798 12 O -0.404 6.404 13 C -0.564 4.564 14 H 0.079 0.921 15 C -0.133 4.133 16 N -0.538 5.538 17 Si 0.726 3.274 18 H -0.207 1.207 19 H -0.211 1.211 20 H -0.197 1.197 21 C -0.073 4.073 22 C -0.180 4.180 23 H 0.081 0.919 24 H 0.087 0.913 25 H 0.083 0.917 26 H 0.064 0.936 27 H 0.066 0.934 28 H 0.086 0.914 29 H 0.091 0.909 30 H 0.108 0.892 31 H 0.112 0.888 32 H 0.049 0.951 33 H 0.085 0.915 34 H 0.049 0.951 35 H 0.082 0.918 36 H 0.086 0.914 37 H 0.082 0.918 38 H 0.230 0.770 39 H 0.075 0.925 40 H 0.051 0.949 41 H 0.095 0.905 42 H 0.105 0.895 43 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges -4.990 -15.263 -10.210 19.029 hybrid contribution 0.244 0.838 0.735 1.141 sum -4.746 -14.425 -9.476 17.900 Atomic orbital electron populations 1.21746 0.93849 1.02076 1.03245 1.22495 0.95499 0.84085 0.99851 1.87903 1.20051 1.25969 1.94635 1.23074 0.81294 0.97480 0.97861 1.23259 1.01072 0.95672 0.97639 1.22390 0.99686 0.94389 0.94434 1.22266 0.97291 0.96389 0.91371 1.64749 1.06896 1.25242 1.26650 1.23311 0.94845 0.92925 0.98477 1.22957 0.99757 0.97170 0.95665 1.19388 0.88569 0.81977 0.89841 1.86115 1.72311 1.18032 1.63913 1.21679 1.30834 1.09645 0.94269 0.92110 1.25002 0.94267 0.94988 0.99083 1.69692 1.37794 1.10405 1.35914 0.86477 0.77919 0.78345 0.84653 1.20728 1.21117 1.19718 1.22829 0.91522 0.94720 0.98224 1.23408 1.01133 0.96303 0.97200 0.91924 0.91257 0.91702 0.93627 0.93401 0.91396 0.90933 0.89196 0.88845 0.95143 0.91491 0.95054 0.91796 0.91423 0.91822 0.76988 0.92514 0.94892 0.90492 0.89514 0.90855 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.23 10.28 37.16 0.38 -0.85 16 2 C 0.06 0.54 6.50 37.16 0.24 0.78 16 3 O -0.37 -4.58 10.27 -35.23 -0.36 -4.95 16 4 C 0.06 0.69 4.37 -25.92 -0.11 0.58 16 5 C -0.14 -1.60 7.47 -25.92 -0.19 -1.79 16 6 C -0.09 -1.28 3.71 -89.81 -0.33 -1.61 16 7 C 0.06 0.90 4.54 -3.83 -0.02 0.88 16 8 N -0.51 -10.19 5.24 -230.44 -1.21 -11.40 16 9 C 0.03 0.65 5.98 -1.89 -0.01 0.64 16 10 C -0.12 -2.79 5.30 -24.87 -0.13 -2.92 16 11 C 0.24 6.19 0.98 -90.41 -0.09 6.10 16 12 O -0.59 -15.88 12.93 -35.23 -0.46 -16.34 16 13 C -0.53 -14.51 8.12 -34.44 -0.28 -14.78 16 14 H 0.06 1.68 7.36 -52.49 -0.39 1.29 16 15 C 0.07 1.85 5.25 -17.82 -0.09 1.76 16 16 N -0.90 -24.49 10.95 55.43 0.61 -23.88 16 17 Si 0.90 21.15 29.54 -169.99 -5.02 16.13 16 18 H -0.28 -6.60 7.11 56.52 0.40 -6.20 16 19 H -0.29 -6.66 7.11 56.52 0.40 -6.25 16 20 H -0.27 -6.39 7.11 56.52 0.40 -5.98 16 21 C 0.05 1.23 6.13 -2.75 -0.02 1.21 16 22 C -0.14 -1.83 7.46 -25.92 -0.19 -2.03 16 23 H 0.06 0.51 8.14 -51.93 -0.42 0.09 16 24 H 0.07 0.42 8.14 -51.93 -0.42 0.00 16 25 H 0.06 0.57 8.14 -51.93 -0.42 0.15 16 26 H 0.05 0.37 8.14 -51.93 -0.42 -0.06 16 27 H 0.05 0.42 8.14 -51.93 -0.42 0.00 16 28 H 0.07 0.64 7.87 -51.93 -0.41 0.24 16 29 H 0.07 0.84 8.14 -51.93 -0.42 0.42 16 30 H 0.09 0.90 8.10 -51.93 -0.42 0.48 16 31 H 0.09 1.48 7.13 -51.93 -0.37 1.11 16 32 H 0.03 0.50 7.83 -51.93 -0.41 0.10 16 33 H 0.07 1.02 7.78 -51.93 -0.40 0.61 16 34 H 0.03 0.63 7.81 -51.93 -0.41 0.23 16 35 H 0.06 1.21 7.55 -51.93 -0.39 0.81 16 36 H 0.07 1.72 7.86 -51.93 -0.41 1.31 16 37 H 0.06 1.57 7.93 -51.93 -0.41 1.16 16 38 H 0.38 10.20 7.33 45.56 0.33 10.54 16 39 H 0.26 6.92 8.31 -40.82 -0.34 6.58 16 40 H 0.03 0.73 7.59 -51.93 -0.39 0.34 16 41 H 0.08 1.75 7.39 -51.93 -0.38 1.36 16 42 H 0.09 1.04 7.90 -51.93 -0.41 0.63 16 43 H 0.07 1.02 8.14 -51.93 -0.42 0.60 16 LS Contribution 339.11 15.07 5.11 5.11 Total: -1.00 -28.67 339.11 -9.14 -37.81 By element: Atomic # 1 Polarization: 16.50 SS G_CDS: -6.96 Total: 9.54 kcal Atomic # 6 Polarization: -11.18 SS G_CDS: -0.85 Total: -12.03 kcal Atomic # 7 Polarization: -34.67 SS G_CDS: -0.60 Total: -35.28 kcal Atomic # 8 Polarization: -20.46 SS G_CDS: -0.82 Total: -21.28 kcal Atomic # 14 Polarization: 21.15 SS G_CDS: -5.02 Total: 16.13 kcal Total LS contribution 5.11 Total: 5.11 kcal Total: -28.67 -9.14 -37.81 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000592154522.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -37.863 kcal (2) G-P(sol) polarization free energy of solvation -28.671 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -66.535 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.142 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.814 kcal (6) G-S(sol) free energy of system = (1) + (5) -75.677 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds