Wall clock time and date at job start Mon Mar 30 2020 01:15:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 O 1.42901 * 109.47332 * 2 1 4 4 C 1.42894 * 114.00185 * 179.97438 * 3 2 1 5 5 C 1.53782 * 113.61550 * 150.00101 * 4 3 2 6 6 C 1.53784 * 87.08228 * 89.11626 * 5 4 3 7 7 C 1.52999 * 113.61237 * 139.98417 * 6 5 4 8 8 N 1.46899 * 109.46743 * 175.00026 * 7 6 5 9 9 C 1.48539 * 110.99764 * 287.39240 * 8 7 6 10 10 C 1.54942 * 103.22480 * 200.27931 * 9 8 7 11 11 C 1.54596 * 102.92135 * 37.41670 * 10 9 8 12 12 O 1.42901 * 110.39354 * 97.00076 * 11 10 9 13 13 C 1.50701 * 110.30855 * 219.12359 * 11 10 9 14 14 H 1.08002 * 119.99810 * 120.88848 * 13 11 10 15 15 C 1.37878 * 119.99852 * 300.61003 * 13 11 10 16 16 N 1.31508 * 120.00147 * 355.30150 * 15 13 11 17 17 Si 1.86802 * 119.99811 * 175.29476 * 15 13 11 18 18 H 1.48502 * 109.46744 * 94.99925 * 17 15 13 19 19 H 1.48493 * 109.47086 * 215.00189 * 17 15 13 20 20 H 1.48500 * 109.47021 * 335.00108 * 17 15 13 21 21 C 1.47906 * 111.00002 * 169.99868 * 8 7 6 22 22 C 1.53775 * 87.07890 * 25.43229 * 6 5 4 23 23 H 1.09003 * 109.46790 * 59.99932 * 1 2 3 24 24 H 1.08992 * 109.47122 * 180.02562 * 1 2 3 25 25 H 1.09000 * 109.47116 * 299.99952 * 1 2 3 26 26 H 1.09003 * 109.47395 * 239.99598 * 2 1 3 27 27 H 1.09001 * 109.47275 * 119.99875 * 2 1 3 28 28 H 1.09001 * 112.90966 * 18.74641 * 4 3 2 29 29 H 1.08998 * 113.61144 * 334.56782 * 5 4 3 30 30 H 1.08999 * 113.68672 * 203.67557 * 5 4 3 31 31 H 1.08998 * 113.60787 * 270.80286 * 6 5 4 32 32 H 1.08999 * 109.47517 * 55.00223 * 7 6 5 33 33 H 1.09003 * 109.47045 * 294.99517 * 7 6 5 34 34 H 1.08997 * 110.66700 * 318.71535 * 9 8 7 35 35 H 1.09003 * 110.66347 * 81.68068 * 9 8 7 36 36 H 1.09002 * 110.72487 * 279.05630 * 10 9 8 37 37 H 1.09005 * 110.71809 * 155.77256 * 10 9 8 38 38 H 0.96700 * 114.00224 * 57.66027 * 12 11 10 39 39 H 0.96996 * 120.00133 * 180.02562 * 16 15 13 40 40 H 1.08997 * 109.91695 * 26.48914 * 21 8 7 41 41 H 1.08997 * 110.08014 * 265.28574 * 21 8 7 42 42 H 1.09006 * 113.61458 * 89.11937 * 22 6 5 43 43 H 1.09007 * 113.61312 * 220.01539 * 22 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0064 1.3473 0.0000 4 6 3.4309 1.4601 0.0006 5 6 3.9489 2.7251 -0.7039 6 6 3.8391 3.4328 0.6570 7 6 5.0009 4.3848 0.9483 8 7 4.7461 5.0974 2.2073 9 6 3.6756 6.1129 2.0369 10 6 3.9079 7.0762 3.2281 11 6 5.4494 7.1303 3.3333 12 8 5.9546 8.2822 2.6551 13 6 5.8747 7.1472 4.7789 14 1 6.5155 6.3670 5.1624 15 6 5.4503 8.1618 5.6106 16 7 4.7517 9.1633 5.1224 17 14 5.8677 8.1136 7.4307 18 1 7.0990 8.9063 7.6773 19 1 4.7435 8.6892 8.2117 20 1 6.0924 6.7068 7.8499 21 6 5.9449 5.8448 2.6453 22 6 4.0018 2.0466 1.3025 23 1 -0.3633 0.5139 -0.8900 24 1 -0.3633 -1.0276 0.0005 25 1 -0.3633 0.5138 0.8900 26 1 1.8934 -0.5139 -0.8900 27 1 1.8934 -0.5138 0.8900 28 1 3.9291 0.5457 -0.3217 29 1 3.2646 3.1170 -1.4563 30 1 4.9724 2.6355 -1.0681 31 1 2.8645 3.8872 0.8353 32 1 5.0930 5.1050 0.1354 33 1 5.9255 3.8139 1.0346 34 1 3.7912 6.6384 1.0890 35 1 2.6914 5.6488 2.1005 36 1 3.4729 6.6715 4.1419 37 1 3.5012 8.0638 3.0103 38 1 5.5962 9.1192 2.9808 39 1 4.4535 9.8772 5.7074 40 1 6.5599 6.0990 1.7821 41 1 6.5228 5.2460 3.3493 42 1 5.0399 1.7702 1.4875 43 1 3.3603 1.8908 2.1699 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000592154522.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:15:54 Heat of formation + Delta-G solvation = -95.548574 kcal Electronic energy + Delta-G solvation = -21238.484741 eV Core-core repulsion = 18090.326286 eV Total energy + Delta-G solvation = -3148.158455 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 269.178 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -40.78939 -39.78278 -37.49245 -36.15983 -34.17520 -32.19202 -31.35301 -29.88898 -27.99933 -26.57224 -25.92778 -23.69916 -23.52528 -21.85552 -21.28710 -20.24380 -19.05851 -17.53428 -16.99104 -16.86796 -16.60434 -16.32648 -16.17290 -15.75503 -15.34414 -14.74145 -14.46120 -14.03034 -13.94584 -13.87706 -13.43367 -13.36736 -13.15150 -13.03611 -12.96594 -12.68987 -12.44937 -12.31969 -12.26157 -12.12418 -11.95695 -11.91265 -11.57475 -11.34962 -11.04229 -10.91205 -10.56493 -10.33049 -10.10942 -9.27699 -8.20658 -6.33446 1.40344 1.42310 1.53070 2.40210 2.70104 2.98508 3.13037 3.73701 3.78056 3.85084 3.94129 4.02673 4.21278 4.23254 4.30726 4.36709 4.45629 4.48835 4.52470 4.54388 4.64643 4.67417 4.79662 4.85697 4.86325 4.95106 4.96796 5.04873 5.09716 5.20298 5.23254 5.27025 5.35567 5.43149 5.51114 5.59128 5.77378 6.00523 6.19050 6.29720 6.41474 6.70706 7.34628 7.44403 8.85874 Molecular weight = 269.18amu Principal moments of inertia in cm(-1) A = 0.029118 B = 0.003742 C = 0.003582 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 961.371561 B = 7481.478880 C = 7815.627370 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C 0.050 3.950 3 O -0.392 6.392 4 C 0.067 3.933 5 C -0.127 4.127 6 C -0.096 4.096 7 C 0.057 3.943 8 N -0.515 5.515 9 C 0.044 3.956 10 C -0.109 4.109 11 C 0.226 3.774 12 O -0.602 6.602 13 C -0.554 4.554 14 H 0.053 0.947 15 C 0.027 3.973 16 N -0.913 5.913 17 Si 0.959 3.041 18 H -0.277 1.277 19 H -0.279 1.279 20 H -0.271 1.271 21 C 0.062 3.938 22 C -0.143 4.143 23 H 0.058 0.942 24 H 0.091 0.909 25 H 0.051 0.949 26 H 0.062 0.938 27 H 0.052 0.948 28 H 0.094 0.906 29 H 0.071 0.929 30 H 0.110 0.890 31 H 0.073 0.927 32 H 0.030 0.970 33 H 0.081 0.919 34 H 0.035 0.965 35 H 0.080 0.920 36 H 0.045 0.955 37 H 0.049 0.951 38 H 0.375 0.625 39 H 0.268 0.732 40 H 0.033 0.967 41 H 0.072 0.928 42 H 0.098 0.902 43 H 0.055 0.945 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.859 -16.442 -10.968 20.353 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.026 4.026 3 O -0.312 6.312 4 C 0.009 3.991 5 C -0.165 4.165 6 C -0.115 4.115 7 C -0.071 4.071 8 N -0.239 5.239 9 C -0.083 4.083 10 C -0.148 4.148 11 C 0.186 3.814 12 O -0.410 6.410 13 C -0.592 4.592 14 H 0.071 0.929 15 C -0.173 4.173 16 N -0.553 5.553 17 Si 0.785 3.215 18 H -0.203 1.203 19 H -0.205 1.205 20 H -0.196 1.196 21 C -0.066 4.066 22 C -0.181 4.181 23 H 0.078 0.922 24 H 0.110 0.890 25 H 0.071 0.929 26 H 0.081 0.919 27 H 0.071 0.929 28 H 0.112 0.888 29 H 0.090 0.910 30 H 0.129 0.871 31 H 0.091 0.909 32 H 0.048 0.952 33 H 0.099 0.901 34 H 0.053 0.947 35 H 0.098 0.902 36 H 0.064 0.936 37 H 0.067 0.933 38 H 0.225 0.775 39 H 0.077 0.923 40 H 0.052 0.948 41 H 0.090 0.910 42 H 0.116 0.884 43 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges -4.885 -16.991 -10.879 20.759 hybrid contribution 0.193 1.376 0.932 1.673 sum -4.692 -15.615 -9.947 19.100 Atomic orbital electron populations 1.21773 0.93262 1.03327 1.02454 1.22714 0.96093 0.82948 1.00870 1.87880 1.20697 1.27972 1.94674 1.23057 0.81131 0.98438 0.96478 1.23243 1.02313 0.94984 0.95990 1.22350 0.97643 0.94446 0.97051 1.22379 0.98944 0.96397 0.89360 1.64746 1.05534 1.24425 1.29180 1.23180 0.95882 0.92395 0.96866 1.22741 0.98618 0.97192 0.96222 1.19648 0.89575 0.82610 0.89563 1.86105 1.72619 1.18233 1.64060 1.21934 1.31518 1.09994 0.95734 0.92918 1.25705 0.94083 0.94612 1.02924 1.69771 1.37835 1.10575 1.37114 0.85525 0.77812 0.78284 0.79882 1.20280 1.20483 1.19566 1.22665 0.92453 0.93522 0.97913 1.23435 1.01639 0.95654 0.97366 0.92247 0.89010 0.92933 0.91930 0.92941 0.88813 0.91048 0.87136 0.90900 0.95226 0.90093 0.94670 0.90190 0.93566 0.93268 0.77544 0.92273 0.94835 0.90964 0.88364 0.92591 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.21 10.28 71.98 0.74 -1.47 16 2 C 0.05 0.83 6.50 71.98 0.47 1.30 16 3 O -0.39 -9.16 10.27 -148.98 -1.53 -10.69 16 4 C 0.07 1.35 4.37 31.12 0.14 1.49 16 5 C -0.13 -2.61 7.47 31.12 0.23 -2.38 16 6 C -0.10 -2.57 3.71 -10.27 -0.04 -2.61 16 7 C 0.06 1.76 4.54 86.30 0.39 2.15 16 8 N -0.51 -20.17 5.24 -882.98 -4.63 -24.80 16 9 C 0.04 1.80 5.98 86.65 0.52 2.32 16 10 C -0.11 -5.30 5.30 31.80 0.17 -5.13 16 11 C 0.23 11.69 0.98 -10.66 -0.01 11.68 16 12 O -0.60 -32.63 12.93 -148.98 -1.93 -34.55 16 13 C -0.55 -30.95 8.12 25.60 0.21 -30.74 16 14 H 0.05 2.95 7.36 -2.91 -0.02 2.93 16 15 C 0.03 1.47 5.25 84.66 0.44 1.91 16 16 N -0.91 -50.26 10.95 21.45 0.23 -50.02 16 17 Si 0.96 43.44 29.54 68.60 2.03 45.47 16 18 H -0.28 -12.31 7.11 99.48 0.71 -11.60 16 19 H -0.28 -12.31 7.11 99.48 0.71 -11.60 16 20 H -0.27 -12.12 7.11 99.48 0.71 -11.41 16 21 C 0.06 2.81 6.13 86.45 0.53 3.34 16 22 C -0.14 -3.43 7.46 31.12 0.23 -3.19 16 23 H 0.06 0.90 8.14 -2.39 -0.02 0.88 16 24 H 0.09 0.90 8.14 -2.39 -0.02 0.88 16 25 H 0.05 0.88 8.14 -2.39 -0.02 0.86 16 26 H 0.06 0.83 8.14 -2.39 -0.02 0.81 16 27 H 0.05 0.81 8.14 -2.39 -0.02 0.79 16 28 H 0.09 1.43 7.87 -2.39 -0.02 1.41 16 29 H 0.07 1.50 8.14 -2.39 -0.02 1.48 16 30 H 0.11 1.82 8.10 -2.39 -0.02 1.81 16 31 H 0.07 2.26 7.13 -2.39 -0.02 2.24 16 32 H 0.03 0.93 7.83 -2.39 -0.02 0.91 16 33 H 0.08 2.28 7.78 -2.39 -0.02 2.26 16 34 H 0.04 1.40 7.81 -2.39 -0.02 1.38 16 35 H 0.08 2.98 7.55 -2.39 -0.02 2.96 16 36 H 0.05 2.40 7.86 -2.39 -0.02 2.38 16 37 H 0.05 2.48 7.93 -2.38 -0.02 2.46 16 38 H 0.38 20.63 7.33 -74.06 -0.54 20.09 16 39 H 0.27 14.01 8.31 -92.71 -0.77 13.24 16 40 H 0.03 1.48 7.59 -2.39 -0.02 1.46 16 41 H 0.07 3.28 7.39 -2.39 -0.02 3.27 16 42 H 0.10 2.11 7.90 -2.38 -0.02 2.09 16 43 H 0.06 1.52 8.14 -2.38 -0.02 1.50 16 Total: -1.00 -61.10 339.11 -1.38 -62.48 By element: Atomic # 1 Polarization: 33.05 SS G_CDS: 0.43 Total: 33.48 kcal Atomic # 6 Polarization: -25.37 SS G_CDS: 4.02 Total: -21.35 kcal Atomic # 7 Polarization: -70.43 SS G_CDS: -4.40 Total: -74.83 kcal Atomic # 8 Polarization: -41.79 SS G_CDS: -3.46 Total: -45.25 kcal Atomic # 14 Polarization: 43.44 SS G_CDS: 2.03 Total: 45.47 kcal Total: -61.10 -1.38 -62.48 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000592154522.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -33.073 kcal (2) G-P(sol) polarization free energy of solvation -61.099 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -94.172 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.377 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.476 kcal (6) G-S(sol) free energy of system = (1) + (5) -95.549 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds