Wall clock time and date at job start Mon Mar 30 2020 01:15:54
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.53000 * 1
3 3 O 1.42901 * 109.47332 * 2 1
4 4 C 1.42894 * 114.00185 * 179.97438 * 3 2 1
5 5 C 1.53782 * 113.61550 * 150.00101 * 4 3 2
6 6 C 1.53784 * 87.08228 * 89.11626 * 5 4 3
7 7 C 1.52999 * 113.61237 * 139.98417 * 6 5 4
8 8 N 1.46899 * 109.46743 * 175.00026 * 7 6 5
9 9 C 1.48539 * 110.99764 * 287.39240 * 8 7 6
10 10 C 1.54942 * 103.22480 * 200.27931 * 9 8 7
11 11 C 1.54596 * 102.92135 * 37.41670 * 10 9 8
12 12 O 1.42901 * 110.39354 * 97.00076 * 11 10 9
13 13 C 1.50701 * 110.30855 * 219.12359 * 11 10 9
14 14 H 1.08002 * 119.99810 * 120.88848 * 13 11 10
15 15 C 1.37878 * 119.99852 * 300.61003 * 13 11 10
16 16 N 1.31508 * 120.00147 * 355.30150 * 15 13 11
17 17 Si 1.86802 * 119.99811 * 175.29476 * 15 13 11
18 18 H 1.48502 * 109.46744 * 94.99925 * 17 15 13
19 19 H 1.48493 * 109.47086 * 215.00189 * 17 15 13
20 20 H 1.48500 * 109.47021 * 335.00108 * 17 15 13
21 21 C 1.47906 * 111.00002 * 169.99868 * 8 7 6
22 22 C 1.53775 * 87.07890 * 25.43229 * 6 5 4
23 23 H 1.09003 * 109.46790 * 59.99932 * 1 2 3
24 24 H 1.08992 * 109.47122 * 180.02562 * 1 2 3
25 25 H 1.09000 * 109.47116 * 299.99952 * 1 2 3
26 26 H 1.09003 * 109.47395 * 239.99598 * 2 1 3
27 27 H 1.09001 * 109.47275 * 119.99875 * 2 1 3
28 28 H 1.09001 * 112.90966 * 18.74641 * 4 3 2
29 29 H 1.08998 * 113.61144 * 334.56782 * 5 4 3
30 30 H 1.08999 * 113.68672 * 203.67557 * 5 4 3
31 31 H 1.08998 * 113.60787 * 270.80286 * 6 5 4
32 32 H 1.08999 * 109.47517 * 55.00223 * 7 6 5
33 33 H 1.09003 * 109.47045 * 294.99517 * 7 6 5
34 34 H 1.08997 * 110.66700 * 318.71535 * 9 8 7
35 35 H 1.09003 * 110.66347 * 81.68068 * 9 8 7
36 36 H 1.09002 * 110.72487 * 279.05630 * 10 9 8
37 37 H 1.09005 * 110.71809 * 155.77256 * 10 9 8
38 38 H 0.96700 * 114.00224 * 57.66027 * 12 11 10
39 39 H 0.96996 * 120.00133 * 180.02562 * 16 15 13
40 40 H 1.08997 * 109.91695 * 26.48914 * 21 8 7
41 41 H 1.08997 * 110.08014 * 265.28574 * 21 8 7
42 42 H 1.09006 * 113.61458 * 89.11937 * 22 6 5
43 43 H 1.09007 * 113.61312 * 220.01539 * 22 6 5
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5300 0.0000 0.0000
3 8 2.0064 1.3473 0.0000
4 6 3.4309 1.4601 0.0006
5 6 3.9489 2.7251 -0.7039
6 6 3.8391 3.4328 0.6570
7 6 5.0009 4.3848 0.9483
8 7 4.7461 5.0974 2.2073
9 6 3.6756 6.1129 2.0369
10 6 3.9079 7.0762 3.2281
11 6 5.4494 7.1303 3.3333
12 8 5.9546 8.2822 2.6551
13 6 5.8747 7.1472 4.7789
14 1 6.5155 6.3670 5.1624
15 6 5.4503 8.1618 5.6106
16 7 4.7517 9.1633 5.1224
17 14 5.8677 8.1136 7.4307
18 1 7.0990 8.9063 7.6773
19 1 4.7435 8.6892 8.2117
20 1 6.0924 6.7068 7.8499
21 6 5.9449 5.8448 2.6453
22 6 4.0018 2.0466 1.3025
23 1 -0.3633 0.5139 -0.8900
24 1 -0.3633 -1.0276 0.0005
25 1 -0.3633 0.5138 0.8900
26 1 1.8934 -0.5139 -0.8900
27 1 1.8934 -0.5138 0.8900
28 1 3.9291 0.5457 -0.3217
29 1 3.2646 3.1170 -1.4563
30 1 4.9724 2.6355 -1.0681
31 1 2.8645 3.8872 0.8353
32 1 5.0930 5.1050 0.1354
33 1 5.9255 3.8139 1.0346
34 1 3.7912 6.6384 1.0890
35 1 2.6914 5.6488 2.1005
36 1 3.4729 6.6715 4.1419
37 1 3.5012 8.0638 3.0103
38 1 5.5962 9.1192 2.9808
39 1 4.4535 9.8772 5.7074
40 1 6.5599 6.0990 1.7821
41 1 6.5228 5.2460 3.3493
42 1 5.0399 1.7702 1.4875
43 1 3.3603 1.8908 2.1699
RHF calculation, no. of doubly occupied orbitals= 52
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC000592154522.mol2 43
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Mon Mar 30 2020 01:15:54
Heat of formation + Delta-G solvation = -95.548574 kcal
Electronic energy + Delta-G solvation = -21238.484741 eV
Core-core repulsion = 18090.326286 eV
Total energy + Delta-G solvation = -3148.158455 eV
No. of doubly occupied orbitals = 52
Molecular weight
(most abundant/longest-lived isotopes) = 269.178 amu
Computer time = 0.44 seconds
Orbital eigenvalues (eV)
-40.78939 -39.78278 -37.49245 -36.15983 -34.17520 -32.19202 -31.35301 -29.88898
-27.99933 -26.57224 -25.92778 -23.69916 -23.52528 -21.85552 -21.28710 -20.24380
-19.05851 -17.53428 -16.99104 -16.86796 -16.60434 -16.32648 -16.17290 -15.75503
-15.34414 -14.74145 -14.46120 -14.03034 -13.94584 -13.87706 -13.43367 -13.36736
-13.15150 -13.03611 -12.96594 -12.68987 -12.44937 -12.31969 -12.26157 -12.12418
-11.95695 -11.91265 -11.57475 -11.34962 -11.04229 -10.91205 -10.56493 -10.33049
-10.10942 -9.27699 -8.20658 -6.33446 1.40344 1.42310 1.53070 2.40210
2.70104 2.98508 3.13037 3.73701 3.78056 3.85084 3.94129 4.02673
4.21278 4.23254 4.30726 4.36709 4.45629 4.48835 4.52470 4.54388
4.64643 4.67417 4.79662 4.85697 4.86325 4.95106 4.96796 5.04873
5.09716 5.20298 5.23254 5.27025 5.35567 5.43149 5.51114 5.59128
5.77378 6.00523 6.19050 6.29720 6.41474 6.70706 7.34628 7.44403
8.85874
Molecular weight = 269.18amu
Principal moments of inertia in cm(-1)
A = 0.029118 B = 0.003742 C = 0.003582
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 961.371561 B = 7481.478880 C = 7815.627370
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.151 4.151
2 C 0.050 3.950
3 O -0.392 6.392
4 C 0.067 3.933
5 C -0.127 4.127
6 C -0.096 4.096
7 C 0.057 3.943
8 N -0.515 5.515
9 C 0.044 3.956
10 C -0.109 4.109
11 C 0.226 3.774
12 O -0.602 6.602
13 C -0.554 4.554
14 H 0.053 0.947
15 C 0.027 3.973
16 N -0.913 5.913
17 Si 0.959 3.041
18 H -0.277 1.277
19 H -0.279 1.279
20 H -0.271 1.271
21 C 0.062 3.938
22 C -0.143 4.143
23 H 0.058 0.942
24 H 0.091 0.909
25 H 0.051 0.949
26 H 0.062 0.938
27 H 0.052 0.948
28 H 0.094 0.906
29 H 0.071 0.929
30 H 0.110 0.890
31 H 0.073 0.927
32 H 0.030 0.970
33 H 0.081 0.919
34 H 0.035 0.965
35 H 0.080 0.920
36 H 0.045 0.955
37 H 0.049 0.951
38 H 0.375 0.625
39 H 0.268 0.732
40 H 0.033 0.967
41 H 0.072 0.928
42 H 0.098 0.902
43 H 0.055 0.945
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -4.859 -16.442 -10.968 20.353
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.208 4.208
2 C -0.026 4.026
3 O -0.312 6.312
4 C 0.009 3.991
5 C -0.165 4.165
6 C -0.115 4.115
7 C -0.071 4.071
8 N -0.239 5.239
9 C -0.083 4.083
10 C -0.148 4.148
11 C 0.186 3.814
12 O -0.410 6.410
13 C -0.592 4.592
14 H 0.071 0.929
15 C -0.173 4.173
16 N -0.553 5.553
17 Si 0.785 3.215
18 H -0.203 1.203
19 H -0.205 1.205
20 H -0.196 1.196
21 C -0.066 4.066
22 C -0.181 4.181
23 H 0.078 0.922
24 H 0.110 0.890
25 H 0.071 0.929
26 H 0.081 0.919
27 H 0.071 0.929
28 H 0.112 0.888
29 H 0.090 0.910
30 H 0.129 0.871
31 H 0.091 0.909
32 H 0.048 0.952
33 H 0.099 0.901
34 H 0.053 0.947
35 H 0.098 0.902
36 H 0.064 0.936
37 H 0.067 0.933
38 H 0.225 0.775
39 H 0.077 0.923
40 H 0.052 0.948
41 H 0.090 0.910
42 H 0.116 0.884
43 H 0.074 0.926
Dipole moment (debyes) X Y Z Total
from point charges -4.885 -16.991 -10.879 20.759
hybrid contribution 0.193 1.376 0.932 1.673
sum -4.692 -15.615 -9.947 19.100
Atomic orbital electron populations
1.21773 0.93262 1.03327 1.02454 1.22714 0.96093 0.82948 1.00870
1.87880 1.20697 1.27972 1.94674 1.23057 0.81131 0.98438 0.96478
1.23243 1.02313 0.94984 0.95990 1.22350 0.97643 0.94446 0.97051
1.22379 0.98944 0.96397 0.89360 1.64746 1.05534 1.24425 1.29180
1.23180 0.95882 0.92395 0.96866 1.22741 0.98618 0.97192 0.96222
1.19648 0.89575 0.82610 0.89563 1.86105 1.72619 1.18233 1.64060
1.21934 1.31518 1.09994 0.95734 0.92918 1.25705 0.94083 0.94612
1.02924 1.69771 1.37835 1.10575 1.37114 0.85525 0.77812 0.78284
0.79882 1.20280 1.20483 1.19566 1.22665 0.92453 0.93522 0.97913
1.23435 1.01639 0.95654 0.97366 0.92247 0.89010 0.92933 0.91930
0.92941 0.88813 0.91048 0.87136 0.90900 0.95226 0.90093 0.94670
0.90190 0.93566 0.93268 0.77544 0.92273 0.94835 0.90964 0.88364
0.92591
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 15.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.15 -2.21 10.28 71.98 0.74 -1.47 16
2 C 0.05 0.83 6.50 71.98 0.47 1.30 16
3 O -0.39 -9.16 10.27 -148.98 -1.53 -10.69 16
4 C 0.07 1.35 4.37 31.12 0.14 1.49 16
5 C -0.13 -2.61 7.47 31.12 0.23 -2.38 16
6 C -0.10 -2.57 3.71 -10.27 -0.04 -2.61 16
7 C 0.06 1.76 4.54 86.30 0.39 2.15 16
8 N -0.51 -20.17 5.24 -882.98 -4.63 -24.80 16
9 C 0.04 1.80 5.98 86.65 0.52 2.32 16
10 C -0.11 -5.30 5.30 31.80 0.17 -5.13 16
11 C 0.23 11.69 0.98 -10.66 -0.01 11.68 16
12 O -0.60 -32.63 12.93 -148.98 -1.93 -34.55 16
13 C -0.55 -30.95 8.12 25.60 0.21 -30.74 16
14 H 0.05 2.95 7.36 -2.91 -0.02 2.93 16
15 C 0.03 1.47 5.25 84.66 0.44 1.91 16
16 N -0.91 -50.26 10.95 21.45 0.23 -50.02 16
17 Si 0.96 43.44 29.54 68.60 2.03 45.47 16
18 H -0.28 -12.31 7.11 99.48 0.71 -11.60 16
19 H -0.28 -12.31 7.11 99.48 0.71 -11.60 16
20 H -0.27 -12.12 7.11 99.48 0.71 -11.41 16
21 C 0.06 2.81 6.13 86.45 0.53 3.34 16
22 C -0.14 -3.43 7.46 31.12 0.23 -3.19 16
23 H 0.06 0.90 8.14 -2.39 -0.02 0.88 16
24 H 0.09 0.90 8.14 -2.39 -0.02 0.88 16
25 H 0.05 0.88 8.14 -2.39 -0.02 0.86 16
26 H 0.06 0.83 8.14 -2.39 -0.02 0.81 16
27 H 0.05 0.81 8.14 -2.39 -0.02 0.79 16
28 H 0.09 1.43 7.87 -2.39 -0.02 1.41 16
29 H 0.07 1.50 8.14 -2.39 -0.02 1.48 16
30 H 0.11 1.82 8.10 -2.39 -0.02 1.81 16
31 H 0.07 2.26 7.13 -2.39 -0.02 2.24 16
32 H 0.03 0.93 7.83 -2.39 -0.02 0.91 16
33 H 0.08 2.28 7.78 -2.39 -0.02 2.26 16
34 H 0.04 1.40 7.81 -2.39 -0.02 1.38 16
35 H 0.08 2.98 7.55 -2.39 -0.02 2.96 16
36 H 0.05 2.40 7.86 -2.39 -0.02 2.38 16
37 H 0.05 2.48 7.93 -2.38 -0.02 2.46 16
38 H 0.38 20.63 7.33 -74.06 -0.54 20.09 16
39 H 0.27 14.01 8.31 -92.71 -0.77 13.24 16
40 H 0.03 1.48 7.59 -2.39 -0.02 1.46 16
41 H 0.07 3.28 7.39 -2.39 -0.02 3.27 16
42 H 0.10 2.11 7.90 -2.38 -0.02 2.09 16
43 H 0.06 1.52 8.14 -2.38 -0.02 1.50 16
Total: -1.00 -61.10 339.11 -1.38 -62.48
By element:
Atomic # 1 Polarization: 33.05 SS G_CDS: 0.43 Total: 33.48 kcal
Atomic # 6 Polarization: -25.37 SS G_CDS: 4.02 Total: -21.35 kcal
Atomic # 7 Polarization: -70.43 SS G_CDS: -4.40 Total: -74.83 kcal
Atomic # 8 Polarization: -41.79 SS G_CDS: -3.46 Total: -45.25 kcal
Atomic # 14 Polarization: 43.44 SS G_CDS: 2.03 Total: 45.47 kcal
Total: -61.10 -1.38 -62.48 kcal
The number of atoms in the molecule is 43
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000592154522.mol2 43
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute -33.073 kcal
(2) G-P(sol) polarization free energy of solvation -61.099 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -94.172 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.377 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.476 kcal
(6) G-S(sol) free energy of system = (1) + (5) -95.549 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.44 seconds