Wall clock time and date at job start Mon Mar 30 2020 01:15:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 O 1.42899 * 109.46889 * 2 1 4 4 C 1.42905 * 113.99778 * 179.97438 * 3 2 1 5 5 C 1.53777 * 113.61622 * 247.49693 * 4 3 2 6 6 C 1.53777 * 87.08229 * 220.02067 * 5 4 3 7 7 C 1.53005 * 113.61379 * 139.98024 * 6 5 4 8 8 N 1.46904 * 109.46804 * 87.50489 * 7 6 5 9 9 C 1.48527 * 111.00308 * 52.60051 * 8 7 6 10 10 C 1.54936 * 103.22686 * 159.71675 * 9 8 7 11 11 C 1.54591 * 102.92394 * 322.59264 * 10 9 8 12 12 O 1.42898 * 110.38995 * 262.99588 * 11 10 9 13 13 C 1.50697 * 110.31052 * 140.87272 * 11 10 9 14 14 H 1.08004 * 120.00004 * 244.28210 * 13 11 10 15 15 C 1.37876 * 120.00480 * 64.28172 * 13 11 10 16 16 N 1.31520 * 119.99513 * 359.97438 * 15 13 11 17 17 Si 1.86794 * 120.00553 * 180.02562 * 15 13 11 18 18 H 1.48506 * 109.47430 * 89.99557 * 17 15 13 19 19 H 1.48498 * 109.47445 * 210.00201 * 17 15 13 20 20 H 1.48510 * 109.46917 * 329.99806 * 17 15 13 21 21 C 1.47898 * 110.99886 * 170.00050 * 8 7 6 22 22 C 1.53781 * 113.61117 * 149.99947 * 4 3 2 23 23 H 1.09008 * 109.47201 * 60.00236 * 1 2 3 24 24 H 1.09001 * 109.47296 * 179.97438 * 1 2 3 25 25 H 1.08997 * 109.47286 * 300.00017 * 1 2 3 26 26 H 1.08997 * 109.47286 * 239.99983 * 2 1 3 27 27 H 1.08997 * 109.46848 * 120.00081 * 2 1 3 28 28 H 1.08994 * 112.85042 * 18.80685 * 4 3 2 29 29 H 1.09004 * 113.61651 * 334.57479 * 5 4 3 30 30 H 1.08999 * 113.61647 * 105.46855 * 5 4 3 31 31 H 1.08995 * 113.69379 * 270.87284 * 6 5 4 32 32 H 1.08991 * 109.47165 * 207.50414 * 7 6 5 33 33 H 1.09001 * 109.47254 * 327.50479 * 7 6 5 34 34 H 1.08999 * 110.66793 * 278.15726 * 9 8 7 35 35 H 1.09003 * 110.66599 * 41.28920 * 9 8 7 36 36 H 1.08996 * 110.72645 * 204.22445 * 10 9 8 37 37 H 1.09003 * 110.87204 * 81.02271 * 10 9 8 38 38 H 0.96704 * 113.99909 * 295.76064 * 12 11 10 39 39 H 0.96996 * 119.99685 * 180.02562 * 16 15 13 40 40 H 1.09000 * 109.91782 * 333.50794 * 21 8 7 41 41 H 1.09010 * 109.91821 * 94.80047 * 21 8 7 42 42 H 1.08994 * 113.61653 * 254.53103 * 22 4 3 43 43 H 1.09002 * 113.61215 * 25.35471 * 22 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0063 1.3473 0.0000 4 6 3.4309 1.4601 0.0006 5 6 4.0018 2.0465 1.3024 6 6 4.9896 2.8315 0.4232 7 6 5.2307 4.2647 0.9016 8 7 6.3195 4.2751 1.8877 9 6 7.5260 3.5914 1.3557 10 6 8.6676 4.1430 2.2462 11 6 8.2598 5.6193 2.4561 12 8 8.9445 6.4619 1.5271 13 6 8.5590 6.0487 3.8693 14 1 7.7523 6.3266 4.5315 15 6 9.8625 6.0870 4.3169 16 7 10.8448 5.7481 3.5107 17 14 10.2334 6.6186 6.0688 18 1 10.2242 5.4302 6.9593 19 1 11.5700 7.2637 6.1179 20 1 9.2005 7.5847 6.5220 21 6 6.7427 5.6584 2.1954 22 6 3.9488 2.7251 -0.7039 23 1 -0.3634 0.5138 -0.8901 24 1 -0.3634 -1.0277 -0.0005 25 1 -0.3634 0.5138 0.8899 26 1 1.8933 -0.5138 -0.8899 27 1 1.8933 -0.5138 0.8900 28 1 3.9280 0.5457 -0.3229 29 1 3.2978 2.6806 1.8414 30 1 4.4806 1.3052 1.9422 31 1 5.9144 2.2933 0.2157 32 1 5.5040 4.8901 0.0519 33 1 4.3212 4.6524 1.3605 34 1 7.4374 2.5109 1.4691 35 1 7.6900 3.8575 0.3114 36 1 9.6255 4.0769 1.7303 37 1 8.7071 3.6145 3.1987 38 1 9.9044 6.4771 1.6434 39 1 11.7618 5.7746 3.8257 40 1 6.5282 6.3095 1.3480 41 1 6.2224 6.0170 3.0837 42 1 4.3848 2.5316 -1.6840 43 1 3.2298 3.5443 -0.7147 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000592154523.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:15:56 Heat of formation + Delta-G solvation = -77.382255 kcal Electronic energy + Delta-G solvation = -21136.136533 eV Core-core repulsion = 17988.765828 eV Total energy + Delta-G solvation = -3147.370705 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 269.178 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -39.71206 -38.18954 -36.53103 -34.49173 -32.03498 -31.28492 -29.98357 -28.10030 -26.39351 -25.65089 -24.08655 -23.06733 -22.21338 -20.39469 -19.46450 -18.89102 -17.08469 -16.93205 -15.79889 -15.50576 -15.28202 -14.93320 -14.65708 -14.05460 -13.79447 -13.53122 -13.23730 -12.75993 -12.58252 -12.35722 -12.31331 -12.02752 -11.80998 -11.58745 -11.33267 -11.24152 -11.08513 -10.96401 -10.63753 -10.52605 -10.49193 -10.37371 -10.26378 -10.13103 -9.82206 -9.45157 -9.10513 -8.55235 -8.05746 -7.69313 -6.16494 -4.22220 3.26256 3.33007 3.37379 3.58537 4.34787 4.43877 4.62738 4.72597 4.79317 4.88555 5.01881 5.04721 5.14431 5.15479 5.21978 5.46501 5.64123 5.67128 5.72923 5.76944 5.82713 5.86295 5.91325 5.94439 6.09482 6.12366 6.19936 6.27323 6.29242 6.49546 6.54292 6.55310 6.97968 7.11190 7.20198 7.34478 7.56523 7.71978 7.78887 7.90269 8.20771 8.79406 9.44764 9.56905 10.91203 Molecular weight = 269.18amu Principal moments of inertia in cm(-1) A = 0.039777 B = 0.003409 C = 0.003300 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 703.749779 B = 8210.681152 C = 8482.726094 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C 0.055 3.945 3 O -0.377 6.377 4 C 0.059 3.941 5 C -0.137 4.137 6 C -0.107 4.107 7 C 0.060 3.940 8 N -0.512 5.512 9 C 0.032 3.968 10 C -0.119 4.119 11 C 0.243 3.757 12 O -0.596 6.596 13 C -0.526 4.526 14 H 0.062 0.938 15 C 0.067 3.933 16 N -0.901 5.901 17 Si 0.901 3.099 18 H -0.280 1.280 19 H -0.286 1.286 20 H -0.273 1.273 21 C 0.053 3.947 22 C -0.131 4.131 23 H 0.061 0.939 24 H 0.068 0.932 25 H 0.063 0.937 26 H 0.045 0.955 27 H 0.047 0.953 28 H 0.083 0.917 29 H 0.089 0.911 30 H 0.068 0.932 31 H 0.094 0.906 32 H 0.032 0.968 33 H 0.071 0.929 34 H 0.063 0.937 35 H 0.032 0.968 36 H 0.063 0.937 37 H 0.067 0.933 38 H 0.383 0.617 39 H 0.266 0.734 40 H 0.035 0.965 41 H 0.077 0.923 42 H 0.068 0.932 43 H 0.090 0.910 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.283 -10.348 -7.464 18.418 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.021 4.021 3 O -0.296 6.296 4 C 0.001 3.999 5 C -0.175 4.175 6 C -0.125 4.125 7 C -0.069 4.069 8 N -0.236 5.236 9 C -0.095 4.095 10 C -0.158 4.158 11 C 0.203 3.797 12 O -0.405 6.405 13 C -0.564 4.564 14 H 0.080 0.920 15 C -0.135 4.135 16 N -0.542 5.542 17 Si 0.728 3.272 18 H -0.206 1.206 19 H -0.212 1.212 20 H -0.198 1.198 21 C -0.074 4.074 22 C -0.169 4.169 23 H 0.080 0.920 24 H 0.087 0.913 25 H 0.082 0.918 26 H 0.063 0.937 27 H 0.065 0.935 28 H 0.101 0.899 29 H 0.108 0.892 30 H 0.086 0.914 31 H 0.113 0.887 32 H 0.050 0.950 33 H 0.089 0.911 34 H 0.082 0.918 35 H 0.050 0.950 36 H 0.081 0.919 37 H 0.085 0.915 38 H 0.235 0.765 39 H 0.076 0.924 40 H 0.053 0.947 41 H 0.096 0.904 42 H 0.087 0.913 43 H 0.108 0.892 Dipole moment (debyes) X Y Z Total from point charges -14.032 -10.351 -7.215 18.871 hybrid contribution 1.349 0.252 0.421 1.435 sum -12.684 -10.099 -6.794 17.579 Atomic orbital electron populations 1.21748 0.94009 1.02040 1.03089 1.22473 0.95445 0.84382 0.99834 1.87956 1.21100 1.25874 1.94667 1.23766 0.80544 0.97750 0.97821 1.23441 0.97929 0.99732 0.96361 1.22395 0.97260 0.96891 0.95996 1.22223 0.96164 0.94629 0.93847 1.64825 1.06391 1.14499 1.37922 1.23268 0.91444 0.97919 0.96893 1.22975 0.95524 0.99001 0.98265 1.19355 0.86336 0.86239 0.87808 1.86084 1.25478 1.70113 1.58872 1.21717 0.92721 1.45009 0.97001 0.91997 1.25021 0.96185 0.94236 0.98022 1.69626 0.99762 1.48808 1.35966 0.86455 0.77592 0.78820 0.84295 1.20565 1.21185 1.19811 1.22877 0.97097 0.87731 0.99694 1.23270 0.98008 0.97750 0.97919 0.91976 0.91329 0.91827 0.93666 0.93455 0.89905 0.89202 0.91365 0.88739 0.95033 0.91077 0.91841 0.94975 0.91857 0.91472 0.76546 0.92402 0.94690 0.90432 0.91308 0.89189 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.16 10.28 37.16 0.38 -0.78 16 2 C 0.06 0.51 6.50 37.16 0.24 0.75 16 3 O -0.38 -4.54 10.35 -35.23 -0.36 -4.91 16 4 C 0.06 0.67 4.31 -25.92 -0.11 0.56 16 5 C -0.14 -1.74 7.46 -25.92 -0.19 -1.93 16 6 C -0.11 -1.43 3.54 -89.81 -0.32 -1.75 16 7 C 0.06 0.97 4.87 -3.82 -0.02 0.95 16 8 N -0.51 -10.04 5.40 -230.46 -1.24 -11.28 16 9 C 0.03 0.64 5.19 -1.90 -0.01 0.63 16 10 C -0.12 -2.80 5.49 -24.87 -0.14 -2.93 16 11 C 0.24 6.16 0.99 -90.42 -0.09 6.07 16 12 O -0.60 -15.87 12.93 -35.23 -0.46 -16.33 16 13 C -0.53 -14.38 8.10 -34.44 -0.28 -14.66 16 14 H 0.06 1.69 7.34 -52.48 -0.39 1.31 16 15 C 0.07 1.79 5.26 -17.82 -0.09 1.70 16 16 N -0.90 -24.37 10.88 55.43 0.60 -23.76 16 17 Si 0.90 21.01 29.54 -169.99 -5.02 15.99 16 18 H -0.28 -6.49 7.11 56.52 0.40 -6.08 16 19 H -0.29 -6.61 7.11 56.52 0.40 -6.21 16 20 H -0.27 -6.37 7.11 56.52 0.40 -5.97 16 21 C 0.05 1.20 6.17 -2.76 -0.02 1.18 16 22 C -0.13 -1.53 7.47 -25.92 -0.19 -1.72 16 23 H 0.06 0.48 8.14 -51.92 -0.42 0.06 16 24 H 0.07 0.39 8.14 -51.93 -0.42 -0.03 16 25 H 0.06 0.51 8.14 -51.93 -0.42 0.09 16 26 H 0.05 0.36 8.14 -51.93 -0.42 -0.06 16 27 H 0.05 0.41 8.14 -51.93 -0.42 -0.01 16 28 H 0.08 0.82 7.87 -51.93 -0.41 0.41 16 29 H 0.09 1.21 7.90 -51.93 -0.41 0.80 16 30 H 0.07 0.86 8.14 -51.93 -0.42 0.44 16 31 H 0.09 1.29 6.27 -51.93 -0.33 0.97 16 32 H 0.03 0.52 7.81 -51.93 -0.41 0.12 16 33 H 0.07 1.11 7.84 -51.93 -0.41 0.70 16 34 H 0.06 1.12 7.34 -51.93 -0.38 0.74 16 35 H 0.03 0.62 8.02 -51.93 -0.42 0.21 16 36 H 0.06 1.54 8.06 -51.93 -0.42 1.12 16 37 H 0.07 1.67 7.86 -51.93 -0.41 1.27 16 38 H 0.38 10.35 7.05 45.56 0.32 10.67 16 39 H 0.27 6.89 8.31 -40.82 -0.34 6.55 16 40 H 0.03 0.78 7.39 -51.93 -0.38 0.40 16 41 H 0.08 1.76 7.39 -51.92 -0.38 1.37 16 42 H 0.07 0.72 8.14 -51.93 -0.42 0.30 16 43 H 0.09 1.07 8.10 -51.93 -0.42 0.65 16 LS Contribution 337.58 15.07 5.09 5.09 Total: -1.00 -28.20 337.58 -9.16 -37.36 By element: Atomic # 1 Polarization: 16.72 SS G_CDS: -6.93 Total: 9.79 kcal Atomic # 6 Polarization: -11.11 SS G_CDS: -0.84 Total: -11.95 kcal Atomic # 7 Polarization: -34.40 SS G_CDS: -0.64 Total: -35.04 kcal Atomic # 8 Polarization: -20.42 SS G_CDS: -0.82 Total: -21.24 kcal Atomic # 14 Polarization: 21.01 SS G_CDS: -5.02 Total: 15.99 kcal Total LS contribution 5.09 Total: 5.09 kcal Total: -28.20 -9.16 -37.36 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000592154523.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -40.021 kcal (2) G-P(sol) polarization free energy of solvation -28.202 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -68.223 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.159 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.361 kcal (6) G-S(sol) free energy of system = (1) + (5) -77.382 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds