Wall clock time and date at job start Mon Mar 30 2020 01:25:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53010 * 1 3 3 O 1.42896 * 109.47079 * 2 1 4 4 C 1.42903 * 113.99546 * 180.02562 * 3 2 1 5 5 H 1.08994 * 109.47408 * 29.99826 * 4 3 2 6 6 C 1.53001 * 109.46947 * 269.99636 * 4 3 2 7 7 C 1.50698 * 109.46837 * 150.00029 * 4 3 2 8 8 O 1.21276 * 120.00564 * 4.99982 * 7 4 3 9 9 N 1.34784 * 119.99966 * 184.99680 * 7 4 3 10 10 C 1.46919 * 120.63188 * 179.97438 * 9 7 4 11 11 C 1.53195 * 108.89273 * 233.51696 * 10 9 7 12 12 C 1.53070 * 109.29524 * 305.57804 * 11 10 9 13 13 C 1.52997 * 109.45504 * 181.24323 * 12 11 10 14 14 C 1.50697 * 109.47246 * 64.78853 * 13 12 11 15 15 H 1.08001 * 119.99754 * 0.02562 * 14 13 12 16 16 C 1.37874 * 120.00470 * 179.97438 * 14 13 12 17 17 N 1.31520 * 119.99586 * 0.02562 * 16 14 13 18 18 Si 1.86796 * 120.00183 * 179.97438 * 16 14 13 19 19 H 1.48492 * 109.47226 * 60.00346 * 18 16 14 20 20 H 1.48500 * 109.47189 * 180.02562 * 18 16 14 21 21 H 1.48503 * 109.47514 * 300.00126 * 18 16 14 22 22 C 1.53039 * 109.65812 * 61.15209 * 12 11 10 23 23 C 1.46928 * 120.62829 * 359.97438 * 9 7 4 24 24 H 1.09006 * 109.46710 * 59.99989 * 1 2 3 25 25 H 1.09000 * 109.47123 * 179.97438 * 1 2 3 26 26 H 1.08999 * 109.47052 * 300.00207 * 1 2 3 27 27 H 1.08999 * 109.47052 * 239.99793 * 2 1 3 28 28 H 1.08997 * 109.46300 * 120.00425 * 2 1 3 29 29 H 1.09005 * 109.46941 * 60.00400 * 6 4 3 30 30 H 1.09000 * 109.47074 * 179.97438 * 6 4 3 31 31 H 1.08994 * 109.47222 * 300.00304 * 6 4 3 32 32 H 1.09002 * 109.58751 * 353.37646 * 10 9 7 33 33 H 1.08996 * 109.58750 * 113.65831 * 10 9 7 34 34 H 1.08997 * 109.50046 * 65.38734 * 11 10 9 35 35 H 1.09003 * 109.49733 * 185.48713 * 11 10 9 36 36 H 1.09007 * 109.35101 * 301.12962 * 12 11 10 37 37 H 1.08997 * 109.47497 * 184.78921 * 13 12 11 38 38 H 1.08997 * 109.47002 * 304.78963 * 13 12 11 39 39 H 0.96997 * 119.99553 * 179.97438 * 17 16 14 40 40 H 1.09002 * 109.49876 * 178.74890 * 22 12 11 41 41 H 1.09005 * 109.52615 * 58.67140 * 22 12 11 42 42 H 1.08998 * 109.58787 * 246.20220 * 23 9 7 43 43 H 1.09007 * 109.58600 * 6.48533 * 23 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 8 2.0064 1.3472 0.0000 4 6 3.4310 1.4600 -0.0006 5 1 3.8632 0.6016 -0.5147 6 6 3.9400 1.5001 1.4417 7 6 3.8343 2.7263 -0.7110 8 8 2.9858 3.5048 -1.0915 9 7 5.1381 2.9939 -0.9234 10 6 5.5469 4.2240 -1.6150 11 6 6.4596 3.8535 -2.7883 12 6 7.6229 3.0014 -2.2748 13 6 8.5536 2.6552 -3.4387 14 6 9.1823 3.9169 -3.9716 15 1 8.9423 4.8703 -3.5245 16 6 10.0646 3.8541 -5.0292 17 7 10.3572 2.6930 -5.5733 18 14 10.8432 5.4181 -5.6902 19 1 11.6226 6.0771 -4.6116 20 1 11.7467 5.0821 -6.8198 21 1 9.7790 6.3386 -6.1650 22 6 7.0815 1.7117 -1.6539 23 6 6.1777 2.0608 -0.4678 24 1 -0.3633 0.5139 -0.8901 25 1 -0.3633 -1.0277 -0.0005 26 1 -0.3633 0.5139 0.8900 27 1 1.8934 -0.5139 -0.8900 28 1 1.8933 -0.5139 0.8900 29 1 3.6482 0.5841 1.9556 30 1 5.0266 1.5856 1.4413 31 1 3.5077 2.3585 1.9558 32 1 4.6645 4.7437 -1.9884 33 1 6.0861 4.8705 -0.9227 34 1 5.8922 3.2849 -3.5252 35 1 6.8470 4.7623 -3.2490 36 1 8.1766 3.5623 -1.5218 37 1 9.3345 1.9791 -3.0908 38 1 7.9810 2.1722 -4.2305 39 1 10.9776 2.6489 -6.3176 40 1 7.9130 1.0969 -1.3092 41 1 6.5070 1.1616 -2.3993 42 1 6.7705 2.5294 0.3176 43 1 5.7113 1.1542 -0.0820 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000592819649.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:25:16 Heat of formation + Delta-G solvation = -100.293171 kcal Electronic energy + Delta-G solvation = -21330.353164 eV Core-core repulsion = 18181.988967 eV Total energy + Delta-G solvation = -3148.364196 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 269.178 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -40.32880 -38.22876 -37.04152 -34.20414 -32.81830 -31.97816 -30.93600 -29.94483 -28.05375 -25.26434 -24.05380 -23.04238 -22.64573 -21.61043 -19.95257 -18.78231 -17.35460 -16.80516 -16.23858 -16.01906 -15.61392 -14.94282 -14.55403 -14.29328 -13.96397 -13.71236 -13.39532 -13.13109 -12.94721 -12.88479 -12.58288 -12.37631 -12.27709 -12.07466 -11.74550 -11.53626 -11.27861 -11.16699 -11.04745 -10.78264 -10.69229 -10.43650 -10.21570 -9.99061 -9.66324 -9.40627 -9.27258 -8.99117 -8.38394 -8.34999 -6.01460 -4.03386 2.69784 2.79638 3.32136 3.36988 3.39148 3.70281 4.41777 4.44582 4.66823 4.75375 4.88452 4.98218 5.02134 5.11523 5.19972 5.31357 5.33590 5.37106 5.45993 5.51752 5.56215 5.64556 5.67565 5.77856 5.88800 5.90715 5.95150 6.05496 6.31152 6.34014 6.50239 6.61819 6.90790 6.97521 7.00965 7.09449 7.53645 7.63826 7.78506 7.97876 8.29326 8.40527 9.02795 9.60623 11.09817 Molecular weight = 269.18amu Principal moments of inertia in cm(-1) A = 0.037360 B = 0.003589 C = 0.003537 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 749.277048 B = 7800.515524 C = 7913.626636 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C 0.054 3.946 3 O -0.359 6.359 4 C 0.072 3.928 5 H 0.085 0.915 6 C -0.177 4.177 7 C 0.514 3.486 8 O -0.529 6.529 9 N -0.603 5.603 10 C 0.110 3.890 11 C -0.118 4.118 12 C -0.081 4.081 13 C 0.028 3.972 14 C -0.517 4.517 15 H 0.056 0.944 16 C 0.057 3.943 17 N -0.896 5.896 18 Si 0.890 3.110 19 H -0.277 1.277 20 H -0.288 1.288 21 H -0.277 1.277 22 C -0.132 4.132 23 C 0.101 3.899 24 H 0.065 0.935 25 H 0.070 0.930 26 H 0.063 0.937 27 H 0.050 0.950 28 H 0.049 0.951 29 H 0.067 0.933 30 H 0.080 0.920 31 H 0.070 0.930 32 H 0.085 0.915 33 H 0.064 0.936 34 H 0.058 0.942 35 H 0.085 0.915 36 H 0.059 0.941 37 H 0.015 0.985 38 H 0.015 0.985 39 H 0.260 0.740 40 H 0.072 0.928 41 H 0.061 0.939 42 H 0.070 0.930 43 H 0.079 0.921 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.776 -6.437 13.731 19.829 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.023 4.023 3 O -0.277 6.277 4 C 0.010 3.990 5 H 0.103 0.897 6 C -0.235 4.235 7 C 0.301 3.699 8 O -0.404 6.404 9 N -0.338 5.338 10 C -0.012 4.012 11 C -0.156 4.156 12 C -0.100 4.100 13 C -0.009 4.009 14 C -0.556 4.556 15 H 0.074 0.926 16 C -0.144 4.144 17 N -0.536 5.536 18 Si 0.718 3.282 19 H -0.203 1.203 20 H -0.214 1.214 21 H -0.202 1.202 22 C -0.170 4.170 23 C -0.022 4.022 24 H 0.084 0.916 25 H 0.089 0.911 26 H 0.082 0.918 27 H 0.068 0.932 28 H 0.067 0.933 29 H 0.086 0.914 30 H 0.099 0.901 31 H 0.089 0.911 32 H 0.104 0.896 33 H 0.082 0.918 34 H 0.076 0.924 35 H 0.103 0.897 36 H 0.077 0.923 37 H 0.034 0.966 38 H 0.033 0.967 39 H 0.070 0.930 40 H 0.091 0.909 41 H 0.080 0.920 42 H 0.088 0.912 43 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges -13.266 -5.936 13.383 19.757 hybrid contribution 0.831 0.459 -0.480 1.064 sum -12.435 -5.478 12.903 18.738 Atomic orbital electron populations 1.21726 0.93482 1.02135 1.03395 1.22589 0.95928 0.83691 1.00086 1.88047 1.18527 1.26169 1.94950 1.21860 0.83459 0.96925 0.96716 0.89695 1.22413 1.02441 1.03596 0.95047 1.20289 0.82370 0.87547 0.79701 1.90685 1.49767 1.49115 1.50878 1.48098 1.04952 1.23008 1.57746 1.21785 0.99445 0.85180 0.94762 1.21905 0.95877 1.01811 0.95990 1.21199 0.95907 0.93532 0.99324 1.19113 0.93315 0.96763 0.91676 1.21204 1.25277 0.93517 1.15555 0.92621 1.25016 0.96734 0.95887 0.96801 1.69953 1.35282 1.23880 1.24449 0.86697 0.79289 0.83748 0.78510 1.20289 1.21367 1.20235 1.22047 0.98558 0.99694 0.96673 1.22029 0.89912 0.92568 0.97692 0.91633 0.91071 0.91817 0.93190 0.93279 0.91360 0.90105 0.91129 0.89641 0.91762 0.92367 0.89666 0.92284 0.96617 0.96656 0.92991 0.90930 0.91978 0.91166 0.90260 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.24 10.28 37.16 0.38 -0.86 16 2 C 0.05 0.51 6.47 37.16 0.24 0.75 16 3 O -0.36 -4.84 9.53 -55.09 -0.52 -5.36 16 4 C 0.07 0.87 2.30 -27.88 -0.06 0.80 16 5 H 0.09 0.87 7.08 -51.93 -0.37 0.50 16 6 C -0.18 -1.65 9.10 37.16 0.34 -1.31 16 7 C 0.51 8.11 7.12 -10.98 -0.08 8.04 16 8 O -0.53 -10.49 15.92 -14.30 -0.23 -10.72 16 9 N -0.60 -8.86 2.97 -172.79 -0.51 -9.37 16 10 C 0.11 1.74 6.43 -3.71 -0.02 1.72 16 11 C -0.12 -2.14 5.19 -26.59 -0.14 -2.28 16 12 C -0.08 -1.53 2.10 -90.57 -0.19 -1.72 16 13 C 0.03 0.69 4.45 -27.89 -0.12 0.57 16 14 C -0.52 -14.00 8.39 -34.44 -0.29 -14.29 16 15 H 0.06 1.45 7.05 -52.49 -0.37 1.08 16 16 C 0.06 1.59 5.46 -17.82 -0.10 1.49 16 17 N -0.90 -26.49 13.29 55.43 0.74 -25.76 16 18 Si 0.89 21.35 29.54 -169.99 -5.02 16.33 16 19 H -0.28 -6.53 7.11 56.52 0.40 -6.13 16 20 H -0.29 -6.89 7.11 56.52 0.40 -6.49 16 21 H -0.28 -6.55 7.11 56.52 0.40 -6.15 16 22 C -0.13 -1.98 5.36 -26.63 -0.14 -2.13 16 23 C 0.10 1.22 4.97 -3.73 -0.02 1.20 16 24 H 0.06 0.60 8.14 -51.93 -0.42 0.18 16 25 H 0.07 0.43 8.14 -51.93 -0.42 0.00 16 26 H 0.06 0.53 8.14 -51.93 -0.42 0.10 16 27 H 0.05 0.44 8.08 -51.93 -0.42 0.02 16 28 H 0.05 0.37 7.87 -51.93 -0.41 -0.04 16 29 H 0.07 0.50 7.87 -51.93 -0.41 0.10 16 30 H 0.08 0.66 5.41 -51.93 -0.28 0.38 16 31 H 0.07 0.73 8.14 -51.93 -0.42 0.31 16 32 H 0.09 1.43 7.01 -51.93 -0.36 1.07 16 33 H 0.06 0.94 8.14 -51.93 -0.42 0.52 16 34 H 0.06 1.12 8.14 -51.93 -0.42 0.70 16 35 H 0.08 1.65 6.91 -51.93 -0.36 1.29 16 36 H 0.06 1.11 8.14 -51.93 -0.42 0.69 16 37 H 0.02 0.41 8.14 -51.93 -0.42 -0.02 16 38 H 0.02 0.40 8.14 -51.93 -0.42 -0.02 16 39 H 0.26 7.32 8.31 -40.82 -0.34 6.98 16 40 H 0.07 1.03 8.14 -51.93 -0.42 0.61 16 41 H 0.06 0.98 8.14 -51.93 -0.42 0.55 16 42 H 0.07 0.77 8.14 -51.93 -0.42 0.35 16 43 H 0.08 0.75 4.66 -51.92 -0.24 0.51 16 LS Contribution 338.14 15.07 5.10 5.10 Total: -1.00 -32.59 338.14 -8.09 -40.68 By element: Atomic # 1 Polarization: 4.53 SS G_CDS: -7.43 Total: -2.89 kcal Atomic # 6 Polarization: -7.79 SS G_CDS: -0.21 Total: -8.00 kcal Atomic # 7 Polarization: -35.35 SS G_CDS: 0.22 Total: -35.13 kcal Atomic # 8 Polarization: -15.33 SS G_CDS: -0.75 Total: -16.08 kcal Atomic # 14 Polarization: 21.35 SS G_CDS: -5.02 Total: 16.33 kcal Total LS contribution 5.10 Total: 5.10 kcal Total: -32.59 -8.09 -40.68 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000592819649.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -59.616 kcal (2) G-P(sol) polarization free energy of solvation -32.588 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -92.204 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.089 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.677 kcal (6) G-S(sol) free energy of system = (1) + (5) -100.293 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds