Wall clock time and date at job start Mon Mar 30 2020 01:25:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 O 1.42895 * 109.47081 * 2 1 4 4 C 1.42898 * 114.00280 * 180.02562 * 3 2 1 5 5 H 1.09004 * 109.47207 * 329.99760 * 4 3 2 6 6 C 1.52994 * 109.47529 * 89.99946 * 4 3 2 7 7 C 1.50707 * 109.47185 * 210.00127 * 4 3 2 8 8 O 1.21279 * 119.99768 * 348.31034 * 7 4 3 9 9 N 1.34776 * 119.99743 * 168.30952 * 7 4 3 10 10 C 1.46921 * 120.63275 * 4.26175 * 9 7 4 11 11 C 1.52759 * 109.00868 * 233.58084 * 10 9 7 12 12 C 1.53044 * 109.38196 * 305.58625 * 11 10 9 13 13 C 1.52997 * 109.44640 * 181.25232 * 12 11 10 14 14 C 1.50705 * 109.47275 * 64.94130 * 13 12 11 15 15 H 1.07998 * 119.99869 * 359.97438 * 14 13 12 16 16 C 1.37873 * 119.99747 * 179.97438 * 14 13 12 17 17 N 1.31510 * 120.00626 * 359.97438 * 16 14 13 18 18 Si 1.86810 * 119.99667 * 180.02562 * 16 14 13 19 19 H 1.48502 * 109.46939 * 359.97438 * 18 16 14 20 20 H 1.48503 * 109.47161 * 119.99962 * 18 16 14 21 21 H 1.48498 * 109.46640 * 239.99735 * 18 16 14 22 22 C 1.53041 * 109.53625 * 61.24079 * 12 11 10 23 23 C 1.46928 * 120.62899 * 184.53352 * 9 7 4 24 24 H 1.08997 * 109.46812 * 299.99605 * 1 2 3 25 25 H 1.09002 * 109.47154 * 60.00167 * 1 2 3 26 26 H 1.09005 * 109.46847 * 180.02562 * 1 2 3 27 27 H 1.09009 * 109.47175 * 240.00315 * 2 1 3 28 28 H 1.08995 * 109.47402 * 120.00151 * 2 1 3 29 29 H 1.09003 * 109.47215 * 296.92203 * 6 4 3 30 30 H 1.09002 * 109.47495 * 56.91594 * 6 4 3 31 31 H 1.08998 * 109.47785 * 176.91914 * 6 4 3 32 32 H 1.09004 * 109.58858 * 353.41909 * 10 9 7 33 33 H 1.09001 * 109.58822 * 113.84015 * 10 9 7 34 34 H 1.08997 * 109.56651 * 185.55017 * 11 10 9 35 35 H 1.08999 * 109.36100 * 65.49878 * 11 10 9 36 36 H 1.08996 * 109.46301 * 301.21786 * 12 11 10 37 37 H 1.09003 * 109.47173 * 184.94177 * 13 12 11 38 38 H 1.08999 * 109.47763 * 304.93875 * 13 12 11 39 39 H 0.97002 * 120.00560 * 180.02562 * 17 16 14 40 40 H 1.09003 * 109.49454 * 178.68098 * 22 12 11 41 41 H 1.09006 * 109.49507 * 58.58692 * 22 12 11 42 42 H 1.08997 * 109.59061 * 246.16400 * 23 9 7 43 43 H 1.09007 * 109.58305 * 6.44931 * 23 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0063 1.3472 0.0000 4 6 3.4308 1.4601 -0.0006 5 1 3.8636 0.6016 0.5130 6 6 3.9387 1.5006 -1.4432 7 6 3.8347 2.7264 0.7099 8 8 2.9986 3.5613 0.9834 9 7 5.1250 2.9309 1.0413 10 6 6.1629 1.9736 0.6353 11 6 6.9499 1.5394 1.8705 12 6 7.4847 2.7779 2.5933 13 6 8.2995 2.3436 3.8132 14 6 9.5209 1.5872 3.3582 15 1 9.6981 1.4315 2.3043 16 6 10.4122 1.0941 4.2874 17 7 10.1967 1.2841 5.5708 18 14 11.9267 0.1571 3.7234 19 1 11.9378 0.0811 2.2403 20 1 13.1473 0.8606 4.1927 21 1 11.8983 -1.2158 4.2887 22 6 6.3129 3.6513 3.0474 23 6 5.5195 4.1123 1.8207 24 1 -0.3633 0.5138 0.8900 25 1 -0.3633 0.5138 -0.8900 26 1 -0.3633 -1.0277 0.0005 27 1 1.8934 -0.5138 -0.8901 28 1 1.8934 -0.5138 0.8899 29 1 3.6944 0.5622 -1.9409 30 1 3.4640 2.3269 -1.9725 31 1 5.0195 1.6417 -1.4442 32 1 5.6967 1.1020 0.1758 33 1 6.8384 2.4473 -0.0770 34 1 7.7840 0.9063 1.5680 35 1 6.2940 0.9826 2.5396 36 1 8.1208 3.3474 1.9158 37 1 8.6067 3.2243 4.3773 38 1 7.6894 1.7006 4.4476 39 1 10.8240 0.9375 6.2245 40 1 6.6936 4.5213 3.5825 41 1 5.6629 3.0745 3.7055 42 1 6.1413 4.7640 1.2070 43 1 4.6287 4.6528 2.1411 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000592819650.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:25:17 Heat of formation + Delta-G solvation = -121.370294 kcal Electronic energy + Delta-G solvation = -21381.797770 eV Core-core repulsion = 18232.519601 eV Total energy + Delta-G solvation = -3149.278169 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 269.178 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -41.49014 -39.29719 -38.32387 -35.76098 -34.27784 -33.31861 -32.02534 -30.88216 -29.77447 -26.75712 -25.21328 -24.19509 -23.70140 -23.01694 -21.31406 -20.06872 -18.46529 -18.33178 -17.79505 -16.98919 -16.59309 -16.48381 -16.03537 -15.46156 -15.22072 -14.88841 -14.70047 -14.33869 -14.31792 -14.01828 -13.72012 -13.50587 -13.25535 -13.15861 -13.00462 -12.92584 -12.62666 -12.52097 -12.32390 -12.25999 -12.11310 -12.02251 -11.72821 -11.35309 -11.13328 -10.86056 -10.82908 -10.51653 -10.43499 -9.64895 -8.14655 -6.24278 1.42855 1.44055 1.49264 1.56035 1.76163 2.44440 2.80967 3.19528 3.43122 3.80861 3.94278 3.99062 4.03962 4.10474 4.19186 4.19772 4.33085 4.39955 4.48436 4.51509 4.59494 4.67725 4.75518 4.81539 4.88713 4.89665 4.95887 5.02098 5.09392 5.19783 5.26367 5.30886 5.33659 5.40679 5.54499 5.59706 5.82959 5.91241 6.11268 6.30185 6.40452 6.93275 7.09790 7.44864 8.97580 Molecular weight = 269.18amu Principal moments of inertia in cm(-1) A = 0.025819 B = 0.003950 C = 0.003736 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1084.229353 B = 7086.321756 C = 7492.368075 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C 0.045 3.955 3 O -0.391 6.391 4 C 0.072 3.928 5 H 0.105 0.895 6 C -0.168 4.168 7 C 0.509 3.491 8 O -0.577 6.577 9 N -0.603 5.603 10 C 0.105 3.895 11 C -0.116 4.116 12 C -0.073 4.073 13 C 0.031 3.969 14 C -0.523 4.523 15 H 0.071 0.929 16 C -0.005 4.005 17 N -0.939 5.939 18 Si 0.960 3.040 19 H -0.254 1.254 20 H -0.285 1.285 21 H -0.283 1.283 22 C -0.122 4.122 23 C 0.119 3.881 24 H 0.048 0.952 25 H 0.061 0.939 26 H 0.096 0.904 27 H 0.073 0.927 28 H 0.054 0.946 29 H 0.093 0.907 30 H 0.058 0.942 31 H 0.092 0.908 32 H 0.111 0.889 33 H 0.092 0.908 34 H 0.082 0.918 35 H 0.046 0.954 36 H 0.066 0.934 37 H -0.016 1.016 38 H -0.016 1.016 39 H 0.260 0.740 40 H 0.071 0.929 41 H 0.044 0.956 42 H 0.085 0.915 43 H 0.076 0.924 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.380 -3.617 -15.454 20.129 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.031 4.031 3 O -0.310 6.310 4 C 0.011 3.989 5 H 0.122 0.878 6 C -0.226 4.226 7 C 0.298 3.702 8 O -0.457 6.457 9 N -0.337 5.337 10 C -0.016 4.016 11 C -0.154 4.154 12 C -0.092 4.092 13 C -0.006 4.006 14 C -0.561 4.561 15 H 0.089 0.911 16 C -0.202 4.202 17 N -0.580 5.580 18 Si 0.786 3.214 19 H -0.178 1.178 20 H -0.211 1.211 21 H -0.209 1.209 22 C -0.160 4.160 23 C -0.003 4.003 24 H 0.068 0.932 25 H 0.080 0.920 26 H 0.114 0.886 27 H 0.092 0.908 28 H 0.072 0.928 29 H 0.112 0.888 30 H 0.077 0.923 31 H 0.110 0.890 32 H 0.129 0.871 33 H 0.110 0.890 34 H 0.100 0.900 35 H 0.064 0.936 36 H 0.084 0.916 37 H 0.003 0.997 38 H 0.002 0.998 39 H 0.069 0.931 40 H 0.090 0.910 41 H 0.063 0.937 42 H 0.103 0.897 43 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges -12.884 -3.056 -15.167 20.134 hybrid contribution 1.047 -0.432 0.824 1.401 sum -11.837 -3.488 -14.343 18.921 Atomic orbital electron populations 1.21763 0.92941 1.03494 1.02466 1.22851 0.96476 0.82282 1.01467 1.88012 1.19240 1.28583 1.95212 1.21997 0.83404 0.95299 0.98228 0.87767 1.22334 1.02841 1.04486 0.92907 1.21041 0.81760 0.88686 0.78757 1.90649 1.51360 1.47426 1.56256 1.48200 1.06645 1.25114 1.53704 1.22104 0.89722 0.92905 0.96906 1.21752 0.99517 0.97692 0.96477 1.21045 0.94853 0.95888 0.97419 1.19031 0.94020 0.94269 0.93239 1.21709 1.07118 1.33893 0.93429 0.91128 1.25984 1.01633 0.97632 0.94951 1.70123 1.38266 1.47842 1.01785 0.85462 0.78816 0.77912 0.79243 1.17775 1.21149 1.20928 1.21916 0.96991 1.00064 0.97023 1.21568 0.99209 0.87158 0.92394 0.93247 0.92023 0.88574 0.90847 0.92782 0.88800 0.92294 0.88965 0.87123 0.88972 0.89983 0.93551 0.91572 0.99740 0.99772 0.93128 0.91000 0.93709 0.89730 0.90600 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.32 10.28 71.98 0.74 -1.58 16 2 C 0.05 0.79 6.47 71.98 0.47 1.25 16 3 O -0.39 -10.17 9.55 -130.21 -1.24 -11.42 16 4 C 0.07 1.61 2.28 29.85 0.07 1.68 16 5 H 0.10 1.92 6.90 -2.39 -0.02 1.90 16 6 C -0.17 -2.69 9.12 71.98 0.66 -2.03 16 7 C 0.51 15.44 7.05 87.66 0.62 16.06 16 8 O -0.58 -22.71 15.97 15.75 0.25 -22.46 16 9 N -0.60 -16.63 2.98 -819.73 -2.44 -19.07 16 10 C 0.11 2.38 5.17 86.22 0.45 2.83 16 11 C -0.12 -3.64 5.17 30.53 0.16 -3.48 16 12 C -0.07 -2.73 2.10 -10.77 -0.02 -2.76 16 13 C 0.03 1.58 4.45 29.85 0.13 1.71 16 14 C -0.52 -27.77 8.39 25.60 0.21 -27.56 16 15 H 0.07 3.48 7.06 -2.91 -0.02 3.45 16 16 C -0.01 -0.28 5.46 84.65 0.46 0.18 16 17 N -0.94 -56.45 13.29 21.45 0.28 -56.17 16 18 Si 0.96 42.55 29.54 68.60 2.03 44.58 16 19 H -0.25 -10.40 7.11 99.48 0.71 -9.69 16 20 H -0.29 -12.60 7.11 99.48 0.71 -11.89 16 21 H -0.28 -12.40 7.11 99.48 0.71 -11.69 16 22 C -0.12 -4.09 5.36 30.67 0.16 -3.93 16 23 C 0.12 3.48 6.42 86.36 0.55 4.03 16 24 H 0.05 0.90 8.14 -2.39 -0.02 0.88 16 25 H 0.06 0.96 8.14 -2.39 -0.02 0.94 16 26 H 0.10 0.98 8.14 -2.38 -0.02 0.96 16 27 H 0.07 0.92 7.94 -2.38 -0.02 0.90 16 28 H 0.05 0.89 8.09 -2.39 -0.02 0.87 16 29 H 0.09 1.05 7.94 -2.39 -0.02 1.03 16 30 H 0.06 1.11 8.14 -2.39 -0.02 1.09 16 31 H 0.09 1.20 5.89 -2.39 -0.01 1.19 16 32 H 0.11 1.83 4.70 -2.38 -0.01 1.82 16 33 H 0.09 1.78 8.14 -2.39 -0.02 1.77 16 34 H 0.08 2.66 6.91 -2.39 -0.02 2.64 16 35 H 0.05 1.55 8.14 -2.39 -0.02 1.53 16 36 H 0.07 2.39 8.14 -2.39 -0.02 2.37 16 37 H -0.02 -0.88 8.14 -2.39 -0.02 -0.90 16 38 H -0.02 -0.90 8.14 -2.39 -0.02 -0.92 16 39 H 0.26 14.77 8.31 -92.71 -0.77 13.99 16 40 H 0.07 2.38 8.14 -2.39 -0.02 2.36 16 41 H 0.04 1.63 8.14 -2.38 -0.02 1.61 16 42 H 0.08 2.16 8.14 -2.39 -0.02 2.15 16 43 H 0.08 2.40 7.03 -2.38 -0.02 2.38 16 Total: -1.00 -71.87 338.83 4.50 -67.37 By element: Atomic # 1 Polarization: 9.78 SS G_CDS: 0.96 Total: 10.75 kcal Atomic # 6 Polarization: -18.24 SS G_CDS: 4.66 Total: -13.58 kcal Atomic # 7 Polarization: -73.08 SS G_CDS: -2.16 Total: -75.24 kcal Atomic # 8 Polarization: -32.89 SS G_CDS: -0.99 Total: -33.88 kcal Atomic # 14 Polarization: 42.55 SS G_CDS: 2.03 Total: 44.58 kcal Total: -71.87 4.50 -67.37 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000592819650.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -54.002 kcal (2) G-P(sol) polarization free energy of solvation -71.869 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -125.871 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.501 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.369 kcal (6) G-S(sol) free energy of system = (1) + (5) -121.370 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds