Wall clock time and date at job start Mon Mar 30 2020 00:51:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09002 * 109.46751 * 2 1 4 4 C 1.50701 * 109.47082 * 119.99832 * 2 1 3 5 5 O 1.21277 * 119.99725 * 38.79413 * 4 2 1 6 6 N 1.34783 * 119.99810 * 218.79499 * 4 2 1 7 7 C 1.47419 * 125.64947 * 355.07390 * 6 4 2 8 8 C 1.54908 * 104.83465 * 155.83609 * 7 6 4 9 9 C 1.55160 * 101.57853 * 37.00513 * 8 7 6 10 10 O 1.42903 * 110.71844 * 83.04307 * 9 8 7 11 11 C 1.50698 * 110.71694 * 206.13450 * 9 8 7 12 12 H 1.08002 * 119.99769 * 116.16132 * 11 9 8 13 13 C 1.37872 * 120.00418 * 296.43138 * 11 9 8 14 14 N 1.31515 * 119.99923 * 359.73111 * 13 11 9 15 15 Si 1.86798 * 120.00246 * 179.72402 * 13 11 9 16 16 H 1.48496 * 109.47137 * 0.02562 * 15 13 11 17 17 H 1.48502 * 109.46955 * 120.00293 * 15 13 11 18 18 H 1.48499 * 109.47504 * 240.00098 * 15 13 11 19 19 C 1.47314 * 125.61190 * 175.21435 * 6 4 2 20 20 C 1.52996 * 109.47482 * 240.00157 * 2 1 3 21 21 C 1.53004 * 109.47000 * 299.99876 * 20 2 1 22 22 C 1.53000 * 109.47151 * 59.99958 * 20 2 1 23 23 C 1.52999 * 109.47011 * 179.97438 * 20 2 1 24 24 H 1.09003 * 109.46823 * 178.83122 * 1 2 3 25 25 H 1.08994 * 109.47477 * 298.82786 * 1 2 3 26 26 H 1.09003 * 109.47118 * 58.83821 * 1 2 3 27 27 H 1.08995 * 110.36912 * 36.99355 * 7 6 4 28 28 H 1.09004 * 110.36230 * 274.67596 * 7 6 4 29 29 H 1.09002 * 111.00212 * 278.93559 * 8 7 6 30 30 H 1.09000 * 111.04018 * 155.09384 * 8 7 6 31 31 H 0.96695 * 114.00107 * 63.83743 * 10 9 8 32 32 H 0.97001 * 120.00547 * 179.97438 * 14 13 11 33 33 H 1.09000 * 110.06982 * 61.74735 * 19 6 4 34 34 H 1.09013 * 109.84977 * 300.48540 * 19 6 4 35 35 H 1.08990 * 109.47102 * 59.99958 * 21 20 2 36 36 H 1.09003 * 109.46886 * 180.02562 * 21 20 2 37 37 H 1.08999 * 109.46687 * 299.99802 * 21 20 2 38 38 H 1.09002 * 109.47387 * 59.99970 * 22 20 2 39 39 H 1.08997 * 109.47007 * 180.02562 * 22 20 2 40 40 H 1.09002 * 109.46909 * 299.99647 * 22 20 2 41 41 H 1.08993 * 109.47302 * 60.00120 * 23 20 2 42 42 H 1.09003 * 109.47110 * 180.02562 * 23 20 2 43 43 H 1.09002 * 109.47196 * 299.99827 * 23 20 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0323 -0.7104 1.2305 5 8 1.4626 -1.7025 1.6329 6 7 3.1147 -0.2430 1.8838 7 6 3.9594 0.8847 1.4502 8 6 4.6187 1.4091 2.7502 9 6 4.8704 0.0892 3.5260 10 8 6.0835 -0.5289 3.0920 11 6 4.9049 0.3421 5.0112 12 1 4.1574 -0.1017 5.6521 13 6 5.8874 1.1446 5.5513 14 7 6.7976 1.6851 4.7710 15 14 5.9255 1.4643 7.3913 16 1 4.8005 0.7459 8.0420 17 1 7.2123 0.9788 7.9515 18 1 5.7946 2.9219 7.6434 19 6 3.6506 -0.7771 3.1478 20 6 2.0401 -0.7212 -1.2492 21 6 1.5301 -2.1637 -1.2492 22 6 1.5301 0.0001 -2.4984 23 6 3.5701 -0.7206 -1.2494 24 1 -0.3633 -1.0275 -0.0210 25 1 -0.3634 0.4955 0.9002 26 1 -0.3633 0.5318 -0.8794 27 1 3.3479 1.6633 0.9942 28 1 4.7211 0.5409 0.7504 29 1 3.9380 2.0606 3.2981 30 1 5.5568 1.9204 2.5344 31 1 6.8773 -0.0069 3.2722 32 1 7.4887 2.2500 5.1508 33 1 3.9591 -1.8140 3.0148 34 1 2.8926 -0.7109 3.9285 35 1 0.4402 -2.1638 -1.2493 36 1 1.8939 -2.6777 -2.1390 37 1 1.8935 -2.6775 -0.3592 38 1 1.8934 1.0278 -2.4984 39 1 1.8931 -0.5140 -3.3884 40 1 0.4401 0.0000 -2.4985 41 1 3.9337 -1.2341 -0.3595 42 1 3.9335 -1.2340 -2.1396 43 1 3.9330 0.3073 -1.2496 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000592843652.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:51:02 Heat of formation + Delta-G solvation = -104.238257 kcal Electronic energy + Delta-G solvation = -22456.428651 eV Core-core repulsion = 19307.893383 eV Total energy + Delta-G solvation = -3148.535268 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 269.178 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -40.16222 -37.82548 -36.47324 -34.30976 -32.19721 -30.97959 -29.69043 -28.52864 -27.30474 -27.10159 -25.36995 -23.84189 -22.15191 -20.08316 -19.29075 -17.72535 -17.30930 -16.64780 -15.87361 -15.01187 -14.92585 -14.51275 -14.29152 -14.07347 -13.76234 -13.33558 -13.04782 -12.62522 -12.39251 -12.29106 -12.00169 -11.91968 -11.77135 -11.62582 -11.50116 -11.39403 -11.31131 -11.13692 -10.93710 -10.82471 -10.61590 -10.47706 -10.45492 -10.29644 -10.11612 -9.41521 -9.11649 -8.67930 -8.21976 -7.94869 -6.30651 -4.37764 3.12156 3.17738 3.26922 3.31710 3.59210 4.25857 4.68115 4.79737 4.81681 4.97722 5.17776 5.35136 5.41429 5.45191 5.59679 5.63500 5.70779 5.76442 5.83185 5.85527 5.89881 5.96441 5.99618 6.02245 6.02955 6.16488 6.19518 6.26539 6.33191 6.44900 6.48875 6.55351 6.70916 6.91135 6.99653 7.29454 7.33943 7.72155 8.00726 8.18015 8.64350 8.72227 9.30075 9.40872 10.77100 Molecular weight = 269.18amu Principal moments of inertia in cm(-1) A = 0.035016 B = 0.004989 C = 0.004804 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 799.440176 B = 5610.652647 C = 5827.313502 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.100 4.100 3 H 0.086 0.914 4 C 0.530 3.470 5 O -0.554 6.554 6 N -0.608 5.608 7 C 0.095 3.905 8 C -0.137 4.137 9 C 0.247 3.753 10 O -0.586 6.586 11 C -0.534 4.534 12 H 0.064 0.936 13 C 0.072 3.928 14 N -0.897 5.897 15 Si 0.902 3.098 16 H -0.271 1.271 17 H -0.282 1.282 18 H -0.282 1.282 19 C 0.123 3.877 20 C -0.054 4.054 21 C -0.146 4.146 22 C -0.140 4.140 23 C -0.149 4.149 24 H 0.069 0.931 25 H 0.054 0.946 26 H 0.062 0.938 27 H 0.059 0.941 28 H 0.065 0.935 29 H 0.066 0.934 30 H 0.086 0.914 31 H 0.384 0.616 32 H 0.268 0.732 33 H 0.060 0.940 34 H 0.070 0.930 35 H 0.058 0.942 36 H 0.049 0.951 37 H 0.067 0.933 38 H 0.055 0.945 39 H 0.055 0.945 40 H 0.058 0.942 41 H 0.062 0.938 42 H 0.055 0.945 43 H 0.058 0.942 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.818 0.815 -12.026 13.848 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.121 4.121 3 H 0.104 0.896 4 C 0.318 3.682 5 O -0.433 6.433 6 N -0.340 5.340 7 C -0.028 4.028 8 C -0.175 4.175 9 C 0.207 3.793 10 O -0.395 6.395 11 C -0.572 4.572 12 H 0.083 0.917 13 C -0.130 4.130 14 N -0.537 5.537 15 Si 0.730 3.270 16 H -0.196 1.196 17 H -0.207 1.207 18 H -0.208 1.208 19 C 0.001 3.999 20 C -0.055 4.055 21 C -0.203 4.203 22 C -0.197 4.197 23 C -0.207 4.207 24 H 0.088 0.912 25 H 0.073 0.927 26 H 0.081 0.919 27 H 0.077 0.923 28 H 0.083 0.917 29 H 0.084 0.916 30 H 0.104 0.896 31 H 0.234 0.766 32 H 0.078 0.922 33 H 0.078 0.922 34 H 0.088 0.912 35 H 0.077 0.923 36 H 0.068 0.932 37 H 0.086 0.914 38 H 0.074 0.926 39 H 0.075 0.925 40 H 0.077 0.923 41 H 0.081 0.919 42 H 0.074 0.926 43 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges -7.436 -0.094 -12.026 14.140 hybrid contribution 0.604 0.875 1.211 1.612 sum -6.832 0.781 -10.815 12.816 Atomic orbital electron populations 1.21764 0.93058 1.03147 1.01576 1.21362 0.97579 1.00105 0.93041 0.89603 1.20117 0.79261 0.84420 0.84368 1.90625 1.58140 1.26149 1.68368 1.48764 1.27108 1.33540 1.24616 1.22571 0.93200 0.87806 0.99203 1.23311 1.00630 1.00255 0.93349 1.19452 0.81400 0.86370 0.92092 1.86116 1.17756 1.51021 1.84639 1.21582 1.13355 1.30146 0.92146 0.91742 1.24980 0.94867 0.94385 0.98772 1.69651 1.15687 1.33039 1.35322 0.86367 0.78220 0.77961 0.84479 1.19589 1.20744 1.20829 1.22097 0.95744 0.98137 0.83924 1.20405 0.95781 0.95956 0.93346 1.21986 1.01218 0.94957 1.02144 1.21914 1.01151 1.00067 0.96567 1.22061 0.94180 1.02109 1.02318 0.91166 0.92683 0.91923 0.92291 0.91685 0.91568 0.89561 0.76553 0.92231 0.92185 0.91200 0.92333 0.93183 0.91383 0.92606 0.92549 0.92272 0.91918 0.92592 0.92311 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.73 8.17 37.16 0.30 -1.43 16 2 C -0.10 -1.40 1.80 -91.77 -0.17 -1.56 16 3 H 0.09 1.13 6.26 -51.93 -0.33 0.80 16 4 C 0.53 9.81 5.15 -10.98 -0.06 9.76 16 5 O -0.55 -11.86 15.08 5.56 0.08 -11.78 16 6 N -0.61 -11.93 2.99 -170.29 -0.51 -12.44 16 7 C 0.09 1.70 5.54 -2.53 -0.01 1.68 16 8 C -0.14 -2.91 5.56 -24.58 -0.14 -3.05 16 9 C 0.25 5.93 0.85 -89.94 -0.08 5.85 16 10 O -0.59 -14.67 13.08 -35.23 -0.46 -15.13 16 11 C -0.53 -13.93 8.21 -34.44 -0.28 -14.21 16 12 H 0.06 1.70 7.55 -52.49 -0.40 1.30 16 13 C 0.07 1.84 5.27 -17.82 -0.09 1.75 16 14 N -0.90 -22.85 10.67 55.43 0.59 -22.25 16 15 Si 0.90 20.17 29.54 -169.99 -5.02 15.15 16 16 H -0.27 -6.11 7.11 56.52 0.40 -5.70 16 17 H -0.28 -6.30 7.11 56.52 0.40 -5.90 16 18 H -0.28 -6.26 7.11 56.52 0.40 -5.86 16 19 C 0.12 2.78 6.25 -2.91 -0.02 2.76 16 20 C -0.05 -0.68 0.57 -154.51 -0.09 -0.76 16 21 C -0.15 -1.92 7.68 37.16 0.29 -1.63 16 22 C -0.14 -1.36 8.12 37.16 0.30 -1.06 16 23 C -0.15 -1.95 6.93 37.16 0.26 -1.69 16 24 H 0.07 0.94 6.13 -51.93 -0.32 0.62 16 25 H 0.05 0.71 8.14 -51.93 -0.42 0.29 16 26 H 0.06 0.62 6.49 -51.93 -0.34 0.29 16 27 H 0.06 0.90 6.59 -51.93 -0.34 0.55 16 28 H 0.06 1.14 6.67 -51.93 -0.35 0.79 16 29 H 0.07 1.45 8.04 -51.93 -0.42 1.03 16 30 H 0.09 1.91 7.64 -51.93 -0.40 1.51 16 31 H 0.38 9.63 7.24 45.56 0.33 9.96 16 32 H 0.27 6.52 8.31 -40.82 -0.34 6.18 16 33 H 0.06 1.42 8.07 -51.93 -0.42 1.01 16 34 H 0.07 1.62 7.64 -51.92 -0.40 1.22 16 35 H 0.06 0.72 6.40 -51.93 -0.33 0.39 16 36 H 0.05 0.57 8.14 -51.93 -0.42 0.15 16 37 H 0.07 1.10 6.31 -51.93 -0.33 0.77 16 38 H 0.05 0.51 8.14 -51.93 -0.42 0.08 16 39 H 0.06 0.50 8.14 -51.93 -0.42 0.08 16 40 H 0.06 0.53 6.46 -51.93 -0.34 0.19 16 41 H 0.06 1.00 6.45 -51.93 -0.34 0.66 16 42 H 0.06 0.65 8.14 -51.93 -0.42 0.22 16 43 H 0.06 0.72 7.37 -51.93 -0.38 0.33 16 LS Contribution 323.13 15.07 4.87 4.87 Total: -1.00 -27.62 323.13 -6.56 -34.18 By element: Atomic # 1 Polarization: 17.32 SS G_CDS: -6.33 Total: 11.00 kcal Atomic # 6 Polarization: -3.82 SS G_CDS: 0.22 Total: -3.60 kcal Atomic # 7 Polarization: -34.78 SS G_CDS: 0.08 Total: -34.69 kcal Atomic # 8 Polarization: -26.53 SS G_CDS: -0.38 Total: -26.91 kcal Atomic # 14 Polarization: 20.17 SS G_CDS: -5.02 Total: 15.15 kcal Total LS contribution 4.87 Total: 4.87 kcal Total: -27.62 -6.56 -34.18 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000592843652.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -70.060 kcal (2) G-P(sol) polarization free energy of solvation -27.621 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -97.680 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.558 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.179 kcal (6) G-S(sol) free energy of system = (1) + (5) -104.238 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds