Wall clock time and date at job start Mon Mar 30 2020 00:51:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09002 * 109.46751 * 2 1 4 4 C 1.50701 * 109.47082 * 119.99832 * 2 1 3 5 5 O 1.21277 * 119.99725 * 38.79413 * 4 2 1 6 6 N 1.34783 * 119.99810 * 218.79499 * 4 2 1 7 7 C 1.47419 * 125.64947 * 355.07390 * 6 4 2 8 8 C 1.54908 * 104.83465 * 155.83609 * 7 6 4 9 9 C 1.55160 * 101.57853 * 37.00513 * 8 7 6 10 10 O 1.42903 * 110.71844 * 83.04307 * 9 8 7 11 11 C 1.50698 * 110.71694 * 206.13450 * 9 8 7 12 12 H 1.08002 * 119.99769 * 116.16132 * 11 9 8 13 13 C 1.37872 * 120.00418 * 296.43138 * 11 9 8 14 14 N 1.31515 * 119.99923 * 359.73111 * 13 11 9 15 15 Si 1.86798 * 120.00246 * 179.72402 * 13 11 9 16 16 H 1.48496 * 109.47137 * 0.02562 * 15 13 11 17 17 H 1.48502 * 109.46955 * 120.00293 * 15 13 11 18 18 H 1.48499 * 109.47504 * 240.00098 * 15 13 11 19 19 C 1.47314 * 125.61190 * 175.21435 * 6 4 2 20 20 C 1.52996 * 109.47482 * 240.00157 * 2 1 3 21 21 C 1.53004 * 109.47000 * 299.99876 * 20 2 1 22 22 C 1.53000 * 109.47151 * 59.99958 * 20 2 1 23 23 C 1.52999 * 109.47011 * 179.97438 * 20 2 1 24 24 H 1.09003 * 109.46823 * 178.83122 * 1 2 3 25 25 H 1.08994 * 109.47477 * 298.82786 * 1 2 3 26 26 H 1.09003 * 109.47118 * 58.83821 * 1 2 3 27 27 H 1.08995 * 110.36912 * 36.99355 * 7 6 4 28 28 H 1.09004 * 110.36230 * 274.67596 * 7 6 4 29 29 H 1.09002 * 111.00212 * 278.93559 * 8 7 6 30 30 H 1.09000 * 111.04018 * 155.09384 * 8 7 6 31 31 H 0.96695 * 114.00107 * 63.83743 * 10 9 8 32 32 H 0.97001 * 120.00547 * 179.97438 * 14 13 11 33 33 H 1.09000 * 110.06982 * 61.74735 * 19 6 4 34 34 H 1.09013 * 109.84977 * 300.48540 * 19 6 4 35 35 H 1.08990 * 109.47102 * 59.99958 * 21 20 2 36 36 H 1.09003 * 109.46886 * 180.02562 * 21 20 2 37 37 H 1.08999 * 109.46687 * 299.99802 * 21 20 2 38 38 H 1.09002 * 109.47387 * 59.99970 * 22 20 2 39 39 H 1.08997 * 109.47007 * 180.02562 * 22 20 2 40 40 H 1.09002 * 109.46909 * 299.99647 * 22 20 2 41 41 H 1.08993 * 109.47302 * 60.00120 * 23 20 2 42 42 H 1.09003 * 109.47110 * 180.02562 * 23 20 2 43 43 H 1.09002 * 109.47196 * 299.99827 * 23 20 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0323 -0.7104 1.2305 5 8 1.4626 -1.7025 1.6329 6 7 3.1147 -0.2430 1.8838 7 6 3.9594 0.8847 1.4502 8 6 4.6187 1.4091 2.7502 9 6 4.8704 0.0892 3.5260 10 8 6.0835 -0.5289 3.0920 11 6 4.9049 0.3421 5.0112 12 1 4.1574 -0.1017 5.6521 13 6 5.8874 1.1446 5.5513 14 7 6.7976 1.6851 4.7710 15 14 5.9255 1.4643 7.3913 16 1 4.8005 0.7459 8.0420 17 1 7.2123 0.9788 7.9515 18 1 5.7946 2.9219 7.6434 19 6 3.6506 -0.7771 3.1478 20 6 2.0401 -0.7212 -1.2492 21 6 1.5301 -2.1637 -1.2492 22 6 1.5301 0.0001 -2.4984 23 6 3.5701 -0.7206 -1.2494 24 1 -0.3633 -1.0275 -0.0210 25 1 -0.3634 0.4955 0.9002 26 1 -0.3633 0.5318 -0.8794 27 1 3.3479 1.6633 0.9942 28 1 4.7211 0.5409 0.7504 29 1 3.9380 2.0606 3.2981 30 1 5.5568 1.9204 2.5344 31 1 6.8773 -0.0069 3.2722 32 1 7.4887 2.2500 5.1508 33 1 3.9591 -1.8140 3.0148 34 1 2.8926 -0.7109 3.9285 35 1 0.4402 -2.1638 -1.2493 36 1 1.8939 -2.6777 -2.1390 37 1 1.8935 -2.6775 -0.3592 38 1 1.8934 1.0278 -2.4984 39 1 1.8931 -0.5140 -3.3884 40 1 0.4401 0.0000 -2.4985 41 1 3.9337 -1.2341 -0.3595 42 1 3.9335 -1.2340 -2.1396 43 1 3.9330 0.3073 -1.2496 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000592843652.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:51:02 Heat of formation + Delta-G solvation = -122.001860 kcal Electronic energy + Delta-G solvation = -22457.198938 eV Core-core repulsion = 19307.893383 eV Total energy + Delta-G solvation = -3149.305556 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 269.178 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -41.56981 -39.41570 -37.82264 -36.10809 -34.19510 -32.12865 -31.32973 -30.18644 -28.33990 -28.13907 -27.04528 -25.19657 -23.66334 -21.69779 -20.82438 -19.23428 -18.98685 -18.13226 -17.21591 -16.92631 -16.43632 -16.09143 -15.77075 -15.34405 -14.86972 -14.79933 -14.66090 -13.94727 -13.82901 -13.50470 -13.49811 -13.29750 -13.21243 -12.99974 -12.93254 -12.70614 -12.68791 -12.58903 -12.43160 -12.27710 -12.11612 -11.97041 -11.86879 -11.45728 -11.35611 -11.26289 -10.71539 -10.53354 -10.14377 -9.57662 -8.26564 -6.40792 1.38951 1.43441 1.53347 1.67072 2.07515 2.38964 2.98931 3.51414 3.69659 3.81646 3.86706 3.99917 4.09252 4.27496 4.32136 4.41498 4.45342 4.50130 4.58451 4.68758 4.76305 4.84221 4.88112 4.90813 4.93042 4.99255 5.06182 5.10713 5.16307 5.19708 5.21883 5.30234 5.36635 5.45794 5.51029 5.53689 5.55729 5.75139 6.06123 6.60171 6.68794 7.21277 7.30050 7.41222 8.79906 Molecular weight = 269.18amu Principal moments of inertia in cm(-1) A = 0.035016 B = 0.004989 C = 0.004804 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 799.440176 B = 5610.652647 C = 5827.313502 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C -0.094 4.094 3 H 0.104 0.896 4 C 0.524 3.476 5 O -0.589 6.589 6 N -0.611 5.611 7 C 0.105 3.895 8 C -0.127 4.127 9 C 0.236 3.764 10 O -0.594 6.594 11 C -0.564 4.564 12 H 0.049 0.951 13 C 0.039 3.961 14 N -0.906 5.906 15 Si 0.959 3.041 16 H -0.277 1.277 17 H -0.278 1.278 18 H -0.273 1.273 19 C 0.129 3.871 20 C -0.052 4.052 21 C -0.144 4.144 22 C -0.134 4.134 23 C -0.149 4.149 24 H 0.057 0.943 25 H 0.047 0.953 26 H 0.098 0.902 27 H 0.098 0.902 28 H 0.072 0.928 29 H 0.057 0.943 30 H 0.078 0.922 31 H 0.381 0.619 32 H 0.273 0.727 33 H 0.037 0.963 34 H 0.055 0.945 35 H 0.064 0.936 36 H 0.066 0.934 37 H 0.027 0.973 38 H 0.068 0.932 39 H 0.067 0.933 40 H 0.070 0.930 41 H 0.025 0.975 42 H 0.070 0.930 43 H 0.071 0.929 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.469 2.540 -13.976 16.049 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C -0.115 4.115 3 H 0.122 0.878 4 C 0.315 3.685 5 O -0.470 6.470 6 N -0.344 5.344 7 C -0.016 4.016 8 C -0.166 4.166 9 C 0.196 3.804 10 O -0.403 6.403 11 C -0.602 4.602 12 H 0.067 0.933 13 C -0.162 4.162 14 N -0.545 5.545 15 Si 0.784 3.216 16 H -0.202 1.202 17 H -0.204 1.204 18 H -0.199 1.199 19 C 0.006 3.994 20 C -0.052 4.052 21 C -0.201 4.201 22 C -0.191 4.191 23 C -0.206 4.206 24 H 0.076 0.924 25 H 0.066 0.934 26 H 0.116 0.884 27 H 0.116 0.884 28 H 0.090 0.910 29 H 0.076 0.924 30 H 0.097 0.903 31 H 0.231 0.769 32 H 0.082 0.918 33 H 0.056 0.944 34 H 0.074 0.926 35 H 0.083 0.917 36 H 0.085 0.915 37 H 0.047 0.953 38 H 0.087 0.913 39 H 0.086 0.914 40 H 0.089 0.911 41 H 0.044 0.956 42 H 0.089 0.911 43 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges -8.088 1.644 -14.001 16.252 hybrid contribution 0.822 0.265 1.836 2.029 sum -7.265 1.909 -12.165 14.297 Atomic orbital electron populations 1.21791 0.91726 1.02847 1.02930 1.21486 0.98576 1.00389 0.91010 0.87769 1.21121 0.78161 0.84030 0.85144 1.90605 1.59033 1.27894 1.69511 1.48844 1.27827 1.34017 1.23687 1.22570 0.93595 0.87937 0.97519 1.23095 1.00384 0.98534 0.94584 1.19580 0.81116 0.87928 0.91770 1.86105 1.18085 1.51484 1.84651 1.21767 1.13880 1.31186 0.93377 0.93264 1.25564 0.94434 0.93979 1.02267 1.69698 1.15609 1.32722 1.36483 0.85501 0.77879 0.78029 0.80147 1.20211 1.20358 1.19870 1.21791 0.95197 0.96962 0.85439 1.20451 0.95316 0.95502 0.93971 1.21961 1.01626 0.95562 1.00961 1.21877 1.01870 1.00432 0.94912 1.22057 0.94711 1.02569 1.01242 0.92441 0.93422 0.88359 0.88414 0.90960 0.92389 0.90315 0.76877 0.91781 0.94448 0.92640 0.91658 0.91519 0.95331 0.91251 0.91382 0.91124 0.95566 0.91122 0.91031 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.06 8.17 71.98 0.59 -2.47 16 2 C -0.09 -2.41 1.80 -11.54 -0.02 -2.43 16 3 H 0.10 2.31 6.26 -2.39 -0.01 2.30 16 4 C 0.52 19.37 5.15 87.66 0.45 19.83 16 5 O -0.59 -26.01 15.08 -3.02 -0.05 -26.06 16 6 N -0.61 -24.11 2.99 -811.05 -2.42 -26.54 16 7 C 0.11 3.62 5.54 86.86 0.48 4.11 16 8 C -0.13 -5.40 5.56 31.99 0.18 -5.22 16 9 C 0.24 11.61 0.85 -10.35 -0.01 11.60 16 10 O -0.59 -30.51 13.08 -148.98 -1.95 -32.46 16 11 C -0.56 -30.19 8.21 25.60 0.21 -29.98 16 12 H 0.05 2.71 7.55 -2.91 -0.02 2.68 16 13 C 0.04 2.00 5.27 84.65 0.45 2.44 16 14 N -0.91 -45.99 10.67 21.45 0.23 -45.76 16 15 Si 0.96 41.43 29.54 68.60 2.03 43.46 16 16 H -0.28 -12.15 7.11 99.48 0.71 -11.45 16 17 H -0.28 -11.81 7.11 99.48 0.71 -11.10 16 18 H -0.27 -11.38 7.11 99.48 0.71 -10.67 16 19 C 0.13 6.11 6.25 86.67 0.54 6.65 16 20 C -0.05 -1.15 0.57 -52.18 -0.03 -1.18 16 21 C -0.14 -3.60 7.68 71.98 0.55 -3.05 16 22 C -0.13 -1.98 8.12 71.98 0.58 -1.40 16 23 C -0.15 -3.55 6.93 71.98 0.50 -3.06 16 24 H 0.06 1.45 6.13 -2.39 -0.01 1.44 16 25 H 0.05 1.14 8.14 -2.39 -0.02 1.12 16 26 H 0.10 1.52 6.49 -2.39 -0.02 1.51 16 27 H 0.10 2.63 6.59 -2.39 -0.02 2.61 16 28 H 0.07 2.41 6.67 -2.39 -0.02 2.39 16 29 H 0.06 2.52 8.04 -2.39 -0.02 2.50 16 30 H 0.08 3.45 7.64 -2.39 -0.02 3.43 16 31 H 0.38 19.53 7.24 -74.06 -0.54 19.00 16 32 H 0.27 13.09 8.31 -92.71 -0.77 12.31 16 33 H 0.04 1.89 8.07 -2.39 -0.02 1.87 16 34 H 0.06 2.73 7.64 -2.38 -0.02 2.71 16 35 H 0.06 1.52 6.40 -2.39 -0.02 1.50 16 36 H 0.07 1.40 8.14 -2.39 -0.02 1.38 16 37 H 0.03 0.93 6.31 -2.39 -0.02 0.91 16 38 H 0.07 0.88 8.14 -2.39 -0.02 0.87 16 39 H 0.07 0.89 8.14 -2.39 -0.02 0.87 16 40 H 0.07 0.91 6.46 -2.39 -0.02 0.89 16 41 H 0.03 0.81 6.45 -2.39 -0.02 0.79 16 42 H 0.07 1.46 8.14 -2.39 -0.02 1.44 16 43 H 0.07 1.51 7.37 -2.39 -0.02 1.49 16 Total: -1.00 -61.49 323.13 2.78 -58.72 By element: Atomic # 1 Polarization: 32.33 SS G_CDS: 0.46 Total: 32.80 kcal Atomic # 6 Polarization: -8.63 SS G_CDS: 4.47 Total: -4.15 kcal Atomic # 7 Polarization: -70.10 SS G_CDS: -2.20 Total: -72.30 kcal Atomic # 8 Polarization: -56.52 SS G_CDS: -1.99 Total: -58.52 kcal Atomic # 14 Polarization: 41.43 SS G_CDS: 2.03 Total: 43.46 kcal Total: -61.49 2.78 -58.72 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000592843652.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -63.282 kcal (2) G-P(sol) polarization free energy of solvation -61.495 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -124.777 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.775 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.720 kcal (6) G-S(sol) free energy of system = (1) + (5) -122.002 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds