Wall clock time and date at job start Mon Mar 30 2020 00:51:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09001 * 109.47053 * 2 1 4 4 C 1.50698 * 109.47162 * 120.00214 * 2 1 3 5 5 O 1.21277 * 120.00246 * 120.00057 * 4 2 1 6 6 N 1.34782 * 120.00020 * 300.00158 * 4 2 1 7 7 C 1.47431 * 125.64540 * 0.03824 * 6 4 2 8 8 C 1.54909 * 104.83077 * 204.09394 * 7 6 4 9 9 C 1.55162 * 101.58160 * 322.99536 * 8 7 6 10 10 O 1.42905 * 110.71617 * 277.13908 * 9 8 7 11 11 C 1.50697 * 110.87503 * 153.93701 * 9 8 7 12 12 H 1.08003 * 120.00221 * 243.94944 * 11 9 8 13 13 C 1.37884 * 119.99973 * 63.94369 * 11 9 8 14 14 N 1.31515 * 119.99859 * 0.02562 * 13 11 9 15 15 Si 1.86801 * 119.99861 * 180.02562 * 13 11 9 16 16 H 1.48495 * 109.47167 * 0.02562 * 15 13 11 17 17 H 1.48498 * 109.46850 * 119.99980 * 15 13 11 18 18 H 1.48504 * 109.46919 * 240.00103 * 15 13 11 19 19 C 1.47016 * 125.64911 * 180.02562 * 6 4 2 20 20 C 1.52994 * 109.47172 * 240.00284 * 2 1 3 21 21 C 1.53000 * 109.47398 * 299.99918 * 20 2 1 22 22 C 1.52999 * 109.47488 * 60.00047 * 20 2 1 23 23 C 1.53006 * 109.47214 * 179.97438 * 20 2 1 24 24 H 1.09003 * 109.47056 * 59.99555 * 1 2 3 25 25 H 1.08998 * 109.47397 * 179.97438 * 1 2 3 26 26 H 1.09001 * 109.47302 * 299.99748 * 1 2 3 27 27 H 1.08997 * 110.36651 * 322.93022 * 7 6 4 28 28 H 1.08996 * 110.36175 * 85.14755 * 7 6 4 29 29 H 1.08993 * 111.00167 * 204.91889 * 8 7 6 30 30 H 1.08997 * 111.00194 * 81.06290 * 8 7 6 31 31 H 0.96705 * 113.99788 * 293.52206 * 10 9 8 32 32 H 0.97002 * 119.99949 * 180.02562 * 14 13 11 33 33 H 1.08998 * 109.88597 * 59.55735 * 19 6 4 34 34 H 1.09001 * 110.00733 * 298.46063 * 19 6 4 35 35 H 1.09003 * 109.46744 * 59.99766 * 21 20 2 36 36 H 1.08997 * 109.47789 * 179.97438 * 21 20 2 37 37 H 1.09005 * 109.46802 * 300.00410 * 21 20 2 38 38 H 1.09001 * 109.47244 * 59.99973 * 22 20 2 39 39 H 1.09001 * 109.47397 * 179.97438 * 22 20 2 40 40 H 1.09003 * 109.46832 * 300.00343 * 22 20 2 41 41 H 1.09003 * 109.46873 * 60.00248 * 23 20 2 42 42 H 1.08997 * 109.46939 * 179.97438 * 23 20 2 43 43 H 1.08992 * 109.47179 * 300.00403 * 23 20 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0323 -0.7104 1.2304 5 8 2.7296 -1.6965 1.1192 6 7 1.7067 -0.2500 2.4546 7 6 0.8702 0.9315 2.7337 8 6 1.2939 1.3915 4.1509 9 6 1.5389 0.0329 4.8592 10 8 0.3096 -0.5164 5.3381 11 6 2.5274 0.1854 5.9863 12 1 3.4788 -0.3238 5.9429 13 6 2.2172 0.9752 7.0732 14 7 1.0585 1.5950 7.1263 15 14 3.4429 1.1649 8.4700 16 1 4.6619 0.3717 8.1701 17 1 3.8083 2.5967 8.6169 18 1 2.8330 0.6775 9.7333 19 6 2.1266 -0.8430 3.7327 20 6 2.0400 -0.7212 -1.2492 21 6 1.5300 -2.1637 -1.2494 22 6 1.5300 0.0001 -2.4985 23 6 3.5700 -0.7206 -1.2496 24 1 -0.3633 0.5139 -0.8900 25 1 -0.3634 -1.0276 -0.0005 26 1 -0.3634 0.5138 0.8900 27 1 1.0683 1.7173 2.0048 28 1 -0.1854 0.6604 2.7208 29 1 0.4921 1.9468 4.6374 30 1 2.2090 1.9825 4.1125 31 1 -0.1008 -0.0028 6.0474 32 1 0.8404 2.1510 7.8907 33 1 3.2146 -0.8505 3.7982 34 1 1.7432 -1.8599 3.8158 35 1 0.4400 -2.1636 -1.2493 36 1 1.8929 -2.6774 -2.1395 37 1 1.8933 -2.6775 -0.3593 38 1 1.8934 1.0278 -2.4985 39 1 1.8938 -0.5134 -3.3885 40 1 0.4400 0.0001 -2.4985 41 1 3.9337 -1.2343 -0.3596 42 1 3.9333 -1.2348 -2.1393 43 1 3.9330 0.3071 -1.2497 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000592843653.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:51:04 Heat of formation + Delta-G solvation = -97.660767 kcal Electronic energy + Delta-G solvation = -22304.275568 eV Core-core repulsion = 19156.025521 eV Total energy + Delta-G solvation = -3148.250047 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 269.178 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -40.21511 -37.95303 -36.23095 -34.43310 -32.20042 -31.33842 -29.42493 -28.23347 -27.25104 -27.10021 -25.26854 -24.12744 -22.08504 -20.11622 -19.16970 -18.04215 -17.29971 -16.49606 -15.28692 -15.27292 -15.03214 -14.66575 -14.27148 -14.06904 -13.87747 -13.37449 -13.06455 -12.83693 -12.31249 -12.09404 -12.06706 -11.89022 -11.70248 -11.65908 -11.38104 -11.35097 -11.21431 -10.99006 -10.86641 -10.83673 -10.59221 -10.48610 -10.38890 -10.31321 -10.11601 -9.39838 -8.95602 -8.68773 -8.23110 -7.95414 -6.31806 -4.39235 3.10501 3.17174 3.26387 3.31167 3.57846 4.24975 4.68863 4.83290 4.90251 4.96748 5.23487 5.39323 5.44109 5.47144 5.58194 5.68342 5.72105 5.82788 5.82986 5.89606 5.91211 5.96547 6.02615 6.04188 6.11189 6.20094 6.23956 6.30037 6.43016 6.45680 6.66622 6.68144 6.75307 6.91073 6.99538 7.29187 7.33203 7.71114 7.98877 8.17217 8.63255 8.71355 9.28992 9.39979 10.75762 Molecular weight = 269.18amu Principal moments of inertia in cm(-1) A = 0.036488 B = 0.004724 C = 0.004544 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 767.191556 B = 5925.637259 C = 6161.058645 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.156 4.156 2 C -0.096 4.096 3 H 0.090 0.910 4 C 0.527 3.473 5 O -0.547 6.547 6 N -0.607 5.607 7 C 0.096 3.904 8 C -0.137 4.137 9 C 0.247 3.753 10 O -0.587 6.587 11 C -0.535 4.535 12 H 0.065 0.935 13 C 0.072 3.928 14 N -0.897 5.897 15 Si 0.902 3.098 16 H -0.271 1.271 17 H -0.282 1.282 18 H -0.281 1.281 19 C 0.122 3.878 20 C -0.045 4.045 21 C -0.154 4.154 22 C -0.142 4.142 23 C -0.154 4.154 24 H 0.065 0.935 25 H 0.062 0.938 26 H 0.068 0.932 27 H 0.059 0.941 28 H 0.064 0.936 29 H 0.086 0.914 30 H 0.066 0.934 31 H 0.384 0.616 32 H 0.268 0.732 33 H 0.070 0.930 34 H 0.059 0.941 35 H 0.048 0.952 36 H 0.046 0.954 37 H 0.085 0.915 38 H 0.052 0.948 39 H 0.054 0.946 40 H 0.057 0.943 41 H 0.086 0.914 42 H 0.047 0.953 43 H 0.043 0.957 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.768 0.922 -13.441 13.588 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.213 4.213 2 C -0.118 4.118 3 H 0.108 0.892 4 C 0.316 3.684 5 O -0.426 6.426 6 N -0.339 5.339 7 C -0.026 4.026 8 C -0.175 4.175 9 C 0.207 3.793 10 O -0.396 6.396 11 C -0.573 4.573 12 H 0.083 0.917 13 C -0.130 4.130 14 N -0.537 5.537 15 Si 0.730 3.270 16 H -0.196 1.196 17 H -0.208 1.208 18 H -0.207 1.207 19 C 0.000 4.000 20 C -0.046 4.046 21 C -0.211 4.211 22 C -0.200 4.200 23 C -0.211 4.211 24 H 0.084 0.916 25 H 0.081 0.919 26 H 0.087 0.913 27 H 0.078 0.922 28 H 0.082 0.918 29 H 0.104 0.896 30 H 0.085 0.915 31 H 0.235 0.765 32 H 0.078 0.922 33 H 0.088 0.912 34 H 0.078 0.922 35 H 0.067 0.933 36 H 0.065 0.935 37 H 0.104 0.896 38 H 0.071 0.929 39 H 0.073 0.927 40 H 0.076 0.924 41 H 0.104 0.896 42 H 0.066 0.934 43 H 0.063 0.937 Dipole moment (debyes) X Y Z Total from point charges -1.356 0.040 -13.902 13.968 hybrid contribution 0.425 0.829 1.218 1.533 sum -0.932 0.868 -12.684 12.748 Atomic orbital electron populations 1.22035 0.93412 1.02968 1.02858 1.21277 0.97347 1.00213 0.92935 0.89185 1.20184 0.80312 0.84520 0.83398 1.90516 1.39235 1.27038 1.85856 1.48666 1.50125 1.29419 1.05669 1.22557 0.94414 0.86673 0.99004 1.23312 1.01801 1.00615 0.91819 1.19447 0.83403 0.86775 0.89680 1.86110 1.39290 1.56146 1.58072 1.21588 1.02584 1.29436 1.03694 0.91691 1.24991 0.95631 0.94200 0.98207 1.69649 1.21663 1.31319 1.31056 0.86363 0.81188 0.77913 0.81551 1.19571 1.20815 1.20724 1.22045 0.99059 0.97431 0.81421 1.20251 0.96060 0.95643 0.92632 1.22156 1.00094 0.95576 1.03290 1.21955 1.01004 0.99977 0.97025 1.22113 0.94311 1.01227 1.03416 0.91631 0.91935 0.91310 0.92217 0.91766 0.89555 0.91536 0.76452 0.92202 0.91155 0.92215 0.93350 0.93524 0.89604 0.92893 0.92729 0.92445 0.89552 0.93382 0.93739 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.90 8.30 37.16 0.31 -1.60 16 2 C -0.10 -1.34 1.45 -91.78 -0.13 -1.47 16 3 H 0.09 1.17 7.85 -51.93 -0.41 0.77 16 4 C 0.53 9.55 6.63 -10.98 -0.07 9.47 16 5 O -0.55 -11.15 11.68 5.56 0.06 -11.09 16 6 N -0.61 -11.78 3.32 -170.52 -0.57 -12.35 16 7 C 0.10 1.70 5.13 -2.53 -0.01 1.69 16 8 C -0.14 -2.90 5.58 -24.58 -0.14 -3.04 16 9 C 0.25 5.90 0.85 -89.94 -0.08 5.82 16 10 O -0.59 -14.63 13.09 -35.23 -0.46 -15.09 16 11 C -0.53 -13.88 8.22 -34.44 -0.28 -14.16 16 12 H 0.06 1.70 7.55 -52.48 -0.40 1.31 16 13 C 0.07 1.83 5.27 -17.82 -0.09 1.74 16 14 N -0.90 -22.75 10.68 55.43 0.59 -22.16 16 15 Si 0.90 20.08 29.54 -169.99 -5.02 15.06 16 16 H -0.27 -6.07 7.11 56.52 0.40 -5.67 16 17 H -0.28 -6.23 7.11 56.52 0.40 -5.83 16 18 H -0.28 -6.26 7.11 56.52 0.40 -5.86 16 19 C 0.12 2.74 6.22 -3.07 -0.02 2.72 16 20 C -0.05 -0.58 0.54 -154.51 -0.08 -0.67 16 21 C -0.15 -2.08 7.82 37.16 0.29 -1.78 16 22 C -0.14 -1.45 8.12 37.16 0.30 -1.15 16 23 C -0.15 -2.08 8.18 37.16 0.30 -1.78 16 24 H 0.06 0.65 6.43 -51.93 -0.33 0.32 16 25 H 0.06 0.80 6.43 -51.93 -0.33 0.47 16 26 H 0.07 0.87 4.99 -51.93 -0.26 0.61 16 27 H 0.06 0.90 7.36 -51.93 -0.38 0.51 16 28 H 0.06 1.11 7.07 -51.93 -0.37 0.74 16 29 H 0.09 1.90 7.66 -51.93 -0.40 1.50 16 30 H 0.07 1.45 8.04 -51.93 -0.42 1.03 16 31 H 0.38 9.64 7.17 45.56 0.33 9.97 16 32 H 0.27 6.50 8.31 -40.82 -0.34 6.16 16 33 H 0.07 1.61 7.65 -51.93 -0.40 1.22 16 34 H 0.06 1.40 8.07 -51.93 -0.42 0.98 16 35 H 0.05 0.60 6.43 -51.93 -0.33 0.27 16 36 H 0.05 0.56 8.14 -51.93 -0.42 0.14 16 37 H 0.09 1.41 5.51 -51.93 -0.29 1.12 16 38 H 0.05 0.50 8.14 -51.93 -0.42 0.08 16 39 H 0.05 0.52 8.14 -51.93 -0.42 0.09 16 40 H 0.06 0.54 6.43 -51.93 -0.33 0.20 16 41 H 0.09 1.42 5.51 -51.93 -0.29 1.13 16 42 H 0.05 0.58 8.14 -51.93 -0.42 0.16 16 43 H 0.04 0.56 8.14 -51.93 -0.42 0.13 16 LS Contribution 321.10 15.07 4.84 4.84 Total: -1.00 -26.88 321.10 -6.53 -33.42 By element: Atomic # 1 Polarization: 17.84 SS G_CDS: -6.27 Total: 11.57 kcal Atomic # 6 Polarization: -4.49 SS G_CDS: 0.29 Total: -4.20 kcal Atomic # 7 Polarization: -34.53 SS G_CDS: 0.03 Total: -34.51 kcal Atomic # 8 Polarization: -25.78 SS G_CDS: -0.40 Total: -26.18 kcal Atomic # 14 Polarization: 20.08 SS G_CDS: -5.02 Total: 15.06 kcal Total LS contribution 4.84 Total: 4.84 kcal Total: -26.88 -6.53 -33.42 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000592843653.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -64.243 kcal (2) G-P(sol) polarization free energy of solvation -26.884 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -91.127 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.534 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -33.418 kcal (6) G-S(sol) free energy of system = (1) + (5) -97.661 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds