Wall clock time and date at job start Mon Mar 30 2020 00:51:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09001 * 109.47053 * 2 1 4 4 C 1.50698 * 109.47162 * 120.00214 * 2 1 3 5 5 O 1.21277 * 120.00246 * 120.00057 * 4 2 1 6 6 N 1.34782 * 120.00020 * 300.00158 * 4 2 1 7 7 C 1.47431 * 125.64540 * 0.03824 * 6 4 2 8 8 C 1.54909 * 104.83077 * 204.09394 * 7 6 4 9 9 C 1.55162 * 101.58160 * 322.99536 * 8 7 6 10 10 O 1.42905 * 110.71617 * 277.13908 * 9 8 7 11 11 C 1.50697 * 110.87503 * 153.93701 * 9 8 7 12 12 H 1.08003 * 120.00221 * 243.94944 * 11 9 8 13 13 C 1.37884 * 119.99973 * 63.94369 * 11 9 8 14 14 N 1.31515 * 119.99859 * 0.02562 * 13 11 9 15 15 Si 1.86801 * 119.99861 * 180.02562 * 13 11 9 16 16 H 1.48495 * 109.47167 * 0.02562 * 15 13 11 17 17 H 1.48498 * 109.46850 * 119.99980 * 15 13 11 18 18 H 1.48504 * 109.46919 * 240.00103 * 15 13 11 19 19 C 1.47016 * 125.64911 * 180.02562 * 6 4 2 20 20 C 1.52994 * 109.47172 * 240.00284 * 2 1 3 21 21 C 1.53000 * 109.47398 * 299.99918 * 20 2 1 22 22 C 1.52999 * 109.47488 * 60.00047 * 20 2 1 23 23 C 1.53006 * 109.47214 * 179.97438 * 20 2 1 24 24 H 1.09003 * 109.47056 * 59.99555 * 1 2 3 25 25 H 1.08998 * 109.47397 * 179.97438 * 1 2 3 26 26 H 1.09001 * 109.47302 * 299.99748 * 1 2 3 27 27 H 1.08997 * 110.36651 * 322.93022 * 7 6 4 28 28 H 1.08996 * 110.36175 * 85.14755 * 7 6 4 29 29 H 1.08993 * 111.00167 * 204.91889 * 8 7 6 30 30 H 1.08997 * 111.00194 * 81.06290 * 8 7 6 31 31 H 0.96705 * 113.99788 * 293.52206 * 10 9 8 32 32 H 0.97002 * 119.99949 * 180.02562 * 14 13 11 33 33 H 1.08998 * 109.88597 * 59.55735 * 19 6 4 34 34 H 1.09001 * 110.00733 * 298.46063 * 19 6 4 35 35 H 1.09003 * 109.46744 * 59.99766 * 21 20 2 36 36 H 1.08997 * 109.47789 * 179.97438 * 21 20 2 37 37 H 1.09005 * 109.46802 * 300.00410 * 21 20 2 38 38 H 1.09001 * 109.47244 * 59.99973 * 22 20 2 39 39 H 1.09001 * 109.47397 * 179.97438 * 22 20 2 40 40 H 1.09003 * 109.46832 * 300.00343 * 22 20 2 41 41 H 1.09003 * 109.46873 * 60.00248 * 23 20 2 42 42 H 1.08997 * 109.46939 * 179.97438 * 23 20 2 43 43 H 1.08992 * 109.47179 * 300.00403 * 23 20 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0323 -0.7104 1.2304 5 8 2.7296 -1.6965 1.1192 6 7 1.7067 -0.2500 2.4546 7 6 0.8702 0.9315 2.7337 8 6 1.2939 1.3915 4.1509 9 6 1.5389 0.0329 4.8592 10 8 0.3096 -0.5164 5.3381 11 6 2.5274 0.1854 5.9863 12 1 3.4788 -0.3238 5.9429 13 6 2.2172 0.9752 7.0732 14 7 1.0585 1.5950 7.1263 15 14 3.4429 1.1649 8.4700 16 1 4.6619 0.3717 8.1701 17 1 3.8083 2.5967 8.6169 18 1 2.8330 0.6775 9.7333 19 6 2.1266 -0.8430 3.7327 20 6 2.0400 -0.7212 -1.2492 21 6 1.5300 -2.1637 -1.2494 22 6 1.5300 0.0001 -2.4985 23 6 3.5700 -0.7206 -1.2496 24 1 -0.3633 0.5139 -0.8900 25 1 -0.3634 -1.0276 -0.0005 26 1 -0.3634 0.5138 0.8900 27 1 1.0683 1.7173 2.0048 28 1 -0.1854 0.6604 2.7208 29 1 0.4921 1.9468 4.6374 30 1 2.2090 1.9825 4.1125 31 1 -0.1008 -0.0028 6.0474 32 1 0.8404 2.1510 7.8907 33 1 3.2146 -0.8505 3.7982 34 1 1.7432 -1.8599 3.8158 35 1 0.4400 -2.1636 -1.2493 36 1 1.8929 -2.6774 -2.1395 37 1 1.8933 -2.6775 -0.3593 38 1 1.8934 1.0278 -2.4985 39 1 1.8938 -0.5134 -3.3885 40 1 0.4400 0.0001 -2.4985 41 1 3.9337 -1.2343 -0.3596 42 1 3.9333 -1.2348 -2.1393 43 1 3.9330 0.3071 -1.2497 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000592843653.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:51:03 Heat of formation + Delta-G solvation = -114.696922 kcal Electronic energy + Delta-G solvation = -22305.014311 eV Core-core repulsion = 19156.025521 eV Total energy + Delta-G solvation = -3148.988790 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 269.178 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -41.59042 -39.52494 -37.56394 -36.17063 -34.18447 -32.59941 -30.98414 -29.91155 -28.28491 -28.06228 -26.99545 -25.42807 -23.55216 -21.77048 -20.68845 -19.28830 -19.16801 -17.93600 -16.97213 -16.80527 -16.60393 -16.05982 -15.77295 -15.41454 -15.04662 -14.76999 -14.42160 -14.32784 -13.92026 -13.51553 -13.41201 -13.25777 -13.10701 -12.85697 -12.84213 -12.72454 -12.55949 -12.41377 -12.35568 -12.24705 -12.12710 -11.97575 -11.85574 -11.38850 -11.32954 -11.24282 -10.67789 -10.32068 -10.13365 -9.53797 -8.26596 -6.41011 1.39145 1.43676 1.53547 1.69370 2.09339 2.39124 2.98846 3.53356 3.70472 3.88524 3.89784 4.01130 4.18114 4.31054 4.37227 4.39150 4.48720 4.58288 4.60230 4.67195 4.85523 4.86186 4.88609 4.91979 4.96309 5.05167 5.10332 5.14965 5.19392 5.24432 5.29340 5.31308 5.44002 5.48999 5.52508 5.60986 5.69008 5.75593 6.05980 6.60676 6.71392 7.25560 7.30280 7.41482 8.79657 Molecular weight = 269.18amu Principal moments of inertia in cm(-1) A = 0.036488 B = 0.004724 C = 0.004544 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 767.191556 B = 5925.637259 C = 6161.058645 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.090 4.090 3 H 0.108 0.892 4 C 0.519 3.481 5 O -0.574 6.574 6 N -0.612 5.612 7 C 0.107 3.893 8 C -0.128 4.128 9 C 0.236 3.764 10 O -0.594 6.594 11 C -0.565 4.565 12 H 0.049 0.951 13 C 0.039 3.961 14 N -0.906 5.906 15 Si 0.958 3.042 16 H -0.277 1.277 17 H -0.274 1.274 18 H -0.277 1.277 19 C 0.130 3.870 20 C -0.046 4.046 21 C -0.152 4.152 22 C -0.136 4.136 23 C -0.152 4.152 24 H 0.097 0.903 25 H 0.052 0.948 26 H 0.065 0.935 27 H 0.098 0.902 28 H 0.073 0.927 29 H 0.078 0.922 30 H 0.056 0.944 31 H 0.381 0.619 32 H 0.273 0.727 33 H 0.054 0.946 34 H 0.039 0.961 35 H 0.058 0.942 36 H 0.057 0.943 37 H 0.049 0.951 38 H 0.064 0.936 39 H 0.062 0.938 40 H 0.070 0.930 41 H 0.050 0.950 42 H 0.059 0.941 43 H 0.054 0.946 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.511 2.524 -15.267 15.677 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.111 4.111 3 H 0.126 0.874 4 C 0.310 3.690 5 O -0.455 6.455 6 N -0.345 5.345 7 C -0.015 4.015 8 C -0.167 4.167 9 C 0.196 3.804 10 O -0.403 6.403 11 C -0.603 4.603 12 H 0.068 0.932 13 C -0.163 4.163 14 N -0.545 5.545 15 Si 0.784 3.216 16 H -0.202 1.202 17 H -0.199 1.199 18 H -0.203 1.203 19 C 0.006 3.994 20 C -0.046 4.046 21 C -0.209 4.209 22 C -0.193 4.193 23 C -0.210 4.210 24 H 0.116 0.884 25 H 0.071 0.929 26 H 0.084 0.916 27 H 0.116 0.884 28 H 0.092 0.908 29 H 0.096 0.904 30 H 0.075 0.925 31 H 0.232 0.768 32 H 0.082 0.918 33 H 0.073 0.927 34 H 0.057 0.943 35 H 0.077 0.923 36 H 0.076 0.924 37 H 0.068 0.932 38 H 0.083 0.917 39 H 0.081 0.919 40 H 0.089 0.911 41 H 0.069 0.931 42 H 0.078 0.922 43 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges -2.112 1.650 -15.749 15.976 hybrid contribution 0.689 0.256 1.795 1.939 sum -1.423 1.906 -13.954 14.156 Atomic orbital electron populations 1.22047 0.91711 1.02857 1.04313 1.21376 0.98598 1.00429 0.90663 0.87395 1.21174 0.79507 0.84319 0.83986 1.90530 1.40279 1.28444 1.86261 1.48757 1.50745 1.29931 1.05053 1.22563 0.94457 0.86834 0.97634 1.23099 1.01069 0.98750 0.93775 1.19580 0.82646 0.88512 0.89699 1.86096 1.39706 1.56560 1.57984 1.21780 1.02743 1.30339 1.05411 0.93222 1.25570 0.97143 0.93756 0.99785 1.69696 1.22244 1.31023 1.31548 0.85504 0.79073 0.77987 0.79018 1.20205 1.19935 1.20306 1.21723 0.97941 0.96475 0.83213 1.20309 0.95390 0.95373 0.93577 1.22101 1.00718 0.96067 1.02030 1.21901 1.01787 1.00232 0.95387 1.22067 0.95192 1.01477 1.02219 0.88422 0.92878 0.91565 0.88425 0.90844 0.90388 0.92482 0.76823 0.91770 0.92721 0.94277 0.92280 0.92357 0.93234 0.91706 0.91861 0.91139 0.93111 0.92183 0.92727 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.20 8.30 71.98 0.60 -2.61 16 2 C -0.09 -2.26 1.45 -11.54 -0.02 -2.28 16 3 H 0.11 2.39 7.85 -2.39 -0.02 2.37 16 4 C 0.52 18.60 6.63 87.66 0.58 19.18 16 5 O -0.57 -24.10 11.68 -3.02 -0.04 -24.13 16 6 N -0.61 -23.68 3.32 -811.80 -2.70 -26.38 16 7 C 0.11 3.61 5.13 86.85 0.45 4.06 16 8 C -0.13 -5.41 5.58 31.99 0.18 -5.23 16 9 C 0.24 11.50 0.85 -10.35 -0.01 11.49 16 10 O -0.59 -30.24 13.09 -148.98 -1.95 -32.19 16 11 C -0.56 -30.07 8.22 25.60 0.21 -29.86 16 12 H 0.05 2.71 7.55 -2.91 -0.02 2.69 16 13 C 0.04 1.98 5.27 84.66 0.45 2.43 16 14 N -0.91 -45.82 10.68 21.45 0.23 -45.59 16 15 Si 0.96 41.28 29.54 68.60 2.03 43.30 16 16 H -0.28 -12.11 7.11 99.48 0.71 -11.40 16 17 H -0.27 -11.39 7.11 99.48 0.71 -10.69 16 18 H -0.28 -11.73 7.11 99.48 0.71 -11.02 16 19 C 0.13 6.04 6.22 86.73 0.54 6.58 16 20 C -0.05 -1.07 0.54 -52.18 -0.03 -1.09 16 21 C -0.15 -3.89 7.82 71.98 0.56 -3.33 16 22 C -0.14 -2.19 8.12 71.98 0.58 -1.60 16 23 C -0.15 -3.91 8.18 71.98 0.59 -3.32 16 24 H 0.10 1.46 6.43 -2.39 -0.02 1.44 16 25 H 0.05 1.23 6.43 -2.39 -0.02 1.21 16 26 H 0.07 1.44 4.99 -2.39 -0.01 1.43 16 27 H 0.10 2.59 7.36 -2.39 -0.02 2.57 16 28 H 0.07 2.38 7.07 -2.39 -0.02 2.36 16 29 H 0.08 3.40 7.66 -2.39 -0.02 3.38 16 30 H 0.06 2.48 8.04 -2.39 -0.02 2.46 16 31 H 0.38 19.47 7.17 -74.05 -0.53 18.94 16 32 H 0.27 13.05 8.31 -92.71 -0.77 12.28 16 33 H 0.05 2.66 7.65 -2.39 -0.02 2.64 16 34 H 0.04 1.93 8.07 -2.39 -0.02 1.91 16 35 H 0.06 1.35 6.43 -2.39 -0.02 1.34 16 36 H 0.06 1.31 8.14 -2.39 -0.02 1.29 16 37 H 0.05 1.64 5.51 -2.38 -0.01 1.63 16 38 H 0.06 0.92 8.14 -2.39 -0.02 0.90 16 39 H 0.06 0.94 8.14 -2.39 -0.02 0.92 16 40 H 0.07 0.97 6.43 -2.39 -0.02 0.95 16 41 H 0.05 1.68 5.51 -2.39 -0.01 1.67 16 42 H 0.06 1.35 8.14 -2.39 -0.02 1.33 16 43 H 0.05 1.26 8.14 -2.39 -0.02 1.24 16 Total: -1.00 -59.46 321.10 2.72 -56.74 By element: Atomic # 1 Polarization: 33.37 SS G_CDS: 0.47 Total: 33.84 kcal Atomic # 6 Polarization: -10.26 SS G_CDS: 4.68 Total: -5.58 kcal Atomic # 7 Polarization: -69.51 SS G_CDS: -2.47 Total: -71.97 kcal Atomic # 8 Polarization: -54.34 SS G_CDS: -1.99 Total: -56.32 kcal Atomic # 14 Polarization: 41.28 SS G_CDS: 2.03 Total: 43.30 kcal Total: -59.46 2.72 -56.74 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000592843653.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -57.959 kcal (2) G-P(sol) polarization free energy of solvation -59.463 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -117.422 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.725 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -56.738 kcal (6) G-S(sol) free energy of system = (1) + (5) -114.697 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds