Wall clock time and date at job start Mon Mar 30 2020 00:51:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09004 * 109.47168 * 2 1 4 4 C 1.50697 * 109.46814 * 240.00522 * 2 1 3 5 5 O 1.21289 * 119.99700 * 239.99834 * 4 2 1 6 6 N 1.34780 * 120.00483 * 59.99702 * 4 2 1 7 7 C 1.47743 * 125.81887 * 359.90665 * 6 4 2 8 8 C 1.54909 * 104.83995 * 155.82587 * 7 6 4 9 9 C 1.55159 * 101.57990 * 37.09908 * 8 7 6 10 10 O 1.42904 * 110.72203 * 82.85631 * 9 8 7 11 11 C 1.50700 * 110.71873 * 206.13106 * 9 8 7 12 12 H 1.07998 * 119.99901 * 113.51991 * 11 9 8 13 13 C 1.37879 * 120.00056 * 293.51821 * 11 9 8 14 14 N 1.31512 * 119.99872 * 0.02562 * 13 11 9 15 15 Si 1.86799 * 119.99776 * 179.97438 * 13 11 9 16 16 H 1.48503 * 109.46939 * 90.00393 * 15 13 11 17 17 H 1.48494 * 109.47250 * 209.99987 * 15 13 11 18 18 H 1.48500 * 109.47518 * 330.00364 * 15 13 11 19 19 C 1.47020 * 125.64983 * 179.97438 * 6 4 2 20 20 C 1.52999 * 109.47301 * 120.00382 * 2 1 3 21 21 C 1.53000 * 109.46962 * 179.97438 * 20 2 1 22 22 C 1.52996 * 109.46925 * 299.99694 * 20 2 1 23 23 C 1.52995 * 109.47136 * 59.99811 * 20 2 1 24 24 H 1.09004 * 109.47168 * 179.97438 * 1 2 3 25 25 H 1.09006 * 109.46981 * 299.99228 * 1 2 3 26 26 H 1.09003 * 109.47623 * 59.99575 * 1 2 3 27 27 H 1.09003 * 110.29227 * 37.02448 * 7 6 4 28 28 H 1.08996 * 110.53057 * 274.75660 * 7 6 4 29 29 H 1.08994 * 111.00889 * 279.01887 * 8 7 6 30 30 H 1.09006 * 111.00238 * 155.16698 * 8 7 6 31 31 H 0.96704 * 113.99611 * 66.48128 * 10 9 8 32 32 H 0.96999 * 119.99465 * 179.97438 * 14 13 11 33 33 H 1.09002 * 109.88367 * 61.60808 * 19 6 4 34 34 H 1.09000 * 109.88319 * 300.59426 * 19 6 4 35 35 H 1.09004 * 109.47245 * 60.00359 * 21 20 2 36 36 H 1.08996 * 109.47094 * 179.97438 * 21 20 2 37 37 H 1.08998 * 109.47454 * 300.00047 * 21 20 2 38 38 H 1.08999 * 109.47200 * 60.00229 * 22 20 2 39 39 H 1.08998 * 109.47111 * 179.97438 * 22 20 2 40 40 H 1.09004 * 109.47567 * 299.99816 * 22 20 2 41 41 H 1.09002 * 109.47379 * 60.00154 * 23 20 2 42 42 H 1.09003 * 109.47010 * 179.97438 * 23 20 2 43 43 H 1.08999 * 109.47167 * 299.99880 * 23 20 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0322 -0.7103 -1.2305 5 8 2.7296 -1.6964 -1.1193 6 7 1.7066 -0.2498 -2.4547 7 6 0.8679 0.9329 -2.7386 8 6 1.2955 1.3916 -4.1551 9 6 1.5418 0.0323 -4.8616 10 8 0.3137 -0.5171 -5.3432 11 6 2.5349 0.1873 -5.9844 12 1 3.5025 -0.2880 -5.9189 13 6 2.2082 0.9357 -7.0953 14 7 1.0302 1.5148 -7.1748 15 14 3.4395 1.1284 -8.4868 16 1 3.2463 0.0355 -9.4735 17 1 3.2325 2.4391 -9.1531 18 1 4.8187 1.0634 -7.9400 19 6 2.1265 -0.8427 -3.7328 20 6 2.0400 -0.7213 1.2492 21 6 3.5700 -0.7218 1.2488 22 6 1.5301 -0.0001 2.4984 23 6 1.5300 -2.1638 1.2491 24 1 -0.3634 -1.0277 -0.0005 25 1 -0.3633 0.5137 0.8901 26 1 -0.3634 0.5139 -0.8899 27 1 1.0642 1.7193 -2.0099 28 1 -0.1882 0.6636 -2.7297 29 1 2.2105 1.9825 -4.1149 30 1 0.4950 1.9467 -4.6443 31 1 -0.0947 -0.0042 -6.0540 32 1 0.8005 2.0417 -7.9562 33 1 1.7411 -1.8590 -3.8144 34 1 3.2145 -0.8527 -3.7972 35 1 3.9338 0.3057 1.2487 36 1 3.9334 -1.2353 2.1389 37 1 3.9330 -1.2358 0.3588 38 1 0.4401 -0.0001 2.4985 39 1 1.8931 -0.5142 3.3884 40 1 1.8935 1.0276 2.4985 41 1 1.8933 -2.6776 0.3591 42 1 1.8938 -2.6778 2.1389 43 1 0.4401 -2.1638 1.2492 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000592843654.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:51:06 Heat of formation + Delta-G solvation = -97.560530 kcal Electronic energy + Delta-G solvation = -22298.660902 eV Core-core repulsion = 19150.415202 eV Total energy + Delta-G solvation = -3148.245700 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 269.178 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -40.20539 -37.94261 -36.22884 -34.42262 -32.17505 -31.34042 -29.44143 -28.22816 -27.25355 -27.09896 -25.26902 -24.12394 -22.09131 -20.10650 -19.16378 -18.04139 -17.30970 -16.49604 -15.28575 -15.26907 -15.03189 -14.66562 -14.26400 -14.06709 -13.87852 -13.37538 -13.06120 -12.83961 -12.30700 -12.08599 -12.06797 -11.88439 -11.70182 -11.65667 -11.37004 -11.35229 -11.21476 -10.98676 -10.86149 -10.83633 -10.60132 -10.49953 -10.39005 -10.31438 -10.11870 -9.41979 -8.95695 -8.67702 -8.23028 -7.95737 -6.32089 -4.39171 3.10505 3.18759 3.26139 3.29603 3.57228 4.24888 4.68749 4.82709 4.90181 4.96496 5.23404 5.39240 5.44014 5.47049 5.57737 5.68361 5.72682 5.82901 5.82935 5.89676 5.90872 5.96518 6.02547 6.03884 6.11005 6.19711 6.23859 6.30046 6.42865 6.45918 6.66539 6.68097 6.75112 6.90532 6.98618 7.28229 7.32063 7.71362 7.98493 8.16981 8.62601 8.71317 9.29375 9.43222 10.75794 Molecular weight = 269.18amu Principal moments of inertia in cm(-1) A = 0.036623 B = 0.004715 C = 0.004532 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 764.372145 B = 5936.466807 C = 6176.812268 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C -0.096 4.096 3 H 0.090 0.910 4 C 0.527 3.473 5 O -0.547 6.547 6 N -0.607 5.607 7 C 0.097 3.903 8 C -0.139 4.139 9 C 0.248 3.752 10 O -0.587 6.587 11 C -0.535 4.535 12 H 0.065 0.935 13 C 0.072 3.928 14 N -0.898 5.898 15 Si 0.903 3.097 16 H -0.278 1.278 17 H -0.285 1.285 18 H -0.272 1.272 19 C 0.122 3.878 20 C -0.045 4.045 21 C -0.154 4.154 22 C -0.142 4.142 23 C -0.154 4.154 24 H 0.062 0.938 25 H 0.065 0.935 26 H 0.068 0.932 27 H 0.059 0.941 28 H 0.065 0.935 29 H 0.066 0.934 30 H 0.085 0.915 31 H 0.386 0.614 32 H 0.269 0.731 33 H 0.059 0.941 34 H 0.070 0.930 35 H 0.043 0.957 36 H 0.047 0.953 37 H 0.086 0.914 38 H 0.057 0.943 39 H 0.054 0.946 40 H 0.052 0.948 41 H 0.085 0.915 42 H 0.046 0.954 43 H 0.048 0.952 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.729 1.053 13.488 13.639 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.213 4.213 2 C -0.118 4.118 3 H 0.108 0.892 4 C 0.316 3.684 5 O -0.427 6.427 6 N -0.339 5.339 7 C -0.026 4.026 8 C -0.177 4.177 9 C 0.208 3.792 10 O -0.397 6.397 11 C -0.573 4.573 12 H 0.083 0.917 13 C -0.130 4.130 14 N -0.538 5.538 15 Si 0.731 3.269 16 H -0.204 1.204 17 H -0.210 1.210 18 H -0.197 1.197 19 C 0.000 4.000 20 C -0.046 4.046 21 C -0.211 4.211 22 C -0.200 4.200 23 C -0.211 4.211 24 H 0.081 0.919 25 H 0.084 0.916 26 H 0.087 0.913 27 H 0.078 0.922 28 H 0.083 0.917 29 H 0.085 0.915 30 H 0.103 0.897 31 H 0.238 0.762 32 H 0.079 0.921 33 H 0.078 0.922 34 H 0.088 0.912 35 H 0.062 0.938 36 H 0.066 0.934 37 H 0.105 0.895 38 H 0.076 0.924 39 H 0.073 0.927 40 H 0.071 0.929 41 H 0.104 0.896 42 H 0.065 0.935 43 H 0.067 0.933 Dipole moment (debyes) X Y Z Total from point charges -1.324 0.173 13.945 14.009 hybrid contribution 0.428 0.808 -1.218 1.523 sum -0.896 0.980 12.728 12.797 Atomic orbital electron populations 1.22034 0.93411 1.02968 1.02844 1.21279 0.97344 1.00211 0.92935 0.89189 1.20177 0.80314 0.84512 0.83377 1.90520 1.39258 1.27033 1.85844 1.48735 1.50068 1.29477 1.05660 1.22595 0.94419 0.86648 0.98901 1.23337 1.01706 1.00726 0.91965 1.19425 0.83491 0.86698 0.89607 1.86100 1.39301 1.56294 1.58023 1.21560 1.01163 1.31871 1.02715 0.91726 1.24984 0.95674 0.94079 0.98258 1.69573 1.20598 1.33556 1.30112 0.86405 0.81336 0.77552 0.81646 1.20357 1.21021 1.19709 1.22052 0.99051 0.97443 0.81453 1.20249 0.96063 0.95643 0.92631 1.22115 0.94305 1.01234 1.03415 1.21952 1.01007 0.99972 0.97024 1.22156 1.00090 0.95575 1.03300 0.91933 0.91625 0.91333 0.92215 0.91715 0.91505 0.89690 0.76218 0.92093 0.92229 0.91180 0.93752 0.93386 0.89534 0.92449 0.92729 0.92887 0.89608 0.93523 0.93346 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.90 8.30 37.16 0.31 -1.59 16 2 C -0.10 -1.34 1.46 -91.77 -0.13 -1.47 16 3 H 0.09 1.17 7.86 -51.93 -0.41 0.76 16 4 C 0.53 9.55 6.63 -10.99 -0.07 9.48 16 5 O -0.55 -11.16 11.67 5.55 0.06 -11.09 16 6 N -0.61 -11.79 3.33 -170.26 -0.57 -12.36 16 7 C 0.10 1.72 5.14 -2.35 -0.01 1.70 16 8 C -0.14 -2.93 5.67 -24.58 -0.14 -3.07 16 9 C 0.25 5.93 0.86 -89.94 -0.08 5.85 16 10 O -0.59 -14.72 13.09 -35.23 -0.46 -15.18 16 11 C -0.53 -13.89 8.21 -34.44 -0.28 -14.17 16 12 H 0.06 1.69 7.53 -52.49 -0.40 1.29 16 13 C 0.07 1.84 5.28 -17.82 -0.09 1.74 16 14 N -0.90 -22.83 10.70 55.43 0.59 -22.23 16 15 Si 0.90 20.09 29.54 -169.99 -5.02 15.07 16 16 H -0.28 -6.21 7.11 56.52 0.40 -5.81 16 17 H -0.28 -6.26 7.11 56.52 0.40 -5.86 16 18 H -0.27 -6.06 7.11 56.52 0.40 -5.66 16 19 C 0.12 2.74 6.21 -3.07 -0.02 2.72 16 20 C -0.05 -0.58 0.54 -154.51 -0.08 -0.67 16 21 C -0.15 -2.08 8.18 37.16 0.30 -1.78 16 22 C -0.14 -1.45 8.12 37.16 0.30 -1.15 16 23 C -0.15 -2.08 7.82 37.16 0.29 -1.79 16 24 H 0.06 0.80 6.43 -51.93 -0.33 0.47 16 25 H 0.06 0.65 6.43 -51.93 -0.33 0.32 16 26 H 0.07 0.86 5.01 -51.93 -0.26 0.60 16 27 H 0.06 0.89 7.38 -51.93 -0.38 0.51 16 28 H 0.06 1.12 7.09 -51.93 -0.37 0.75 16 29 H 0.07 1.45 8.04 -51.93 -0.42 1.03 16 30 H 0.08 1.86 7.77 -51.93 -0.40 1.46 16 31 H 0.39 9.75 6.99 45.56 0.32 10.07 16 32 H 0.27 6.55 8.31 -40.82 -0.34 6.21 16 33 H 0.06 1.40 8.07 -51.93 -0.42 0.98 16 34 H 0.07 1.61 7.63 -51.93 -0.40 1.21 16 35 H 0.04 0.56 8.14 -51.93 -0.42 0.13 16 36 H 0.05 0.58 8.14 -51.93 -0.42 0.16 16 37 H 0.09 1.42 5.51 -51.93 -0.29 1.14 16 38 H 0.06 0.54 6.43 -51.93 -0.33 0.20 16 39 H 0.05 0.52 8.14 -51.93 -0.42 0.09 16 40 H 0.05 0.50 8.14 -51.93 -0.42 0.08 16 41 H 0.09 1.41 5.51 -51.93 -0.29 1.12 16 42 H 0.05 0.56 8.14 -51.93 -0.42 0.14 16 43 H 0.05 0.60 6.43 -51.93 -0.33 0.27 16 LS Contribution 321.20 15.07 4.84 4.84 Total: -1.00 -26.91 321.20 -6.55 -33.46 By element: Atomic # 1 Polarization: 17.96 SS G_CDS: -6.29 Total: 11.67 kcal Atomic # 6 Polarization: -4.47 SS G_CDS: 0.29 Total: -4.18 kcal Atomic # 7 Polarization: -34.62 SS G_CDS: 0.03 Total: -34.59 kcal Atomic # 8 Polarization: -25.87 SS G_CDS: -0.40 Total: -26.27 kcal Atomic # 14 Polarization: 20.09 SS G_CDS: -5.02 Total: 15.07 kcal Total LS contribution 4.84 Total: 4.84 kcal Total: -26.91 -6.55 -33.46 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000592843654.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -64.099 kcal (2) G-P(sol) polarization free energy of solvation -26.911 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -91.010 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.551 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -33.461 kcal (6) G-S(sol) free energy of system = (1) + (5) -97.561 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds