Wall clock time and date at job start Mon Mar 30 2020 00:51:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09004 * 109.47168 * 2 1 4 4 C 1.50697 * 109.46814 * 240.00522 * 2 1 3 5 5 O 1.21289 * 119.99700 * 239.99834 * 4 2 1 6 6 N 1.34780 * 120.00483 * 59.99702 * 4 2 1 7 7 C 1.47743 * 125.81887 * 359.90665 * 6 4 2 8 8 C 1.54909 * 104.83995 * 155.82587 * 7 6 4 9 9 C 1.55159 * 101.57990 * 37.09908 * 8 7 6 10 10 O 1.42904 * 110.72203 * 82.85631 * 9 8 7 11 11 C 1.50700 * 110.71873 * 206.13106 * 9 8 7 12 12 H 1.07998 * 119.99901 * 113.51991 * 11 9 8 13 13 C 1.37879 * 120.00056 * 293.51821 * 11 9 8 14 14 N 1.31512 * 119.99872 * 0.02562 * 13 11 9 15 15 Si 1.86799 * 119.99776 * 179.97438 * 13 11 9 16 16 H 1.48503 * 109.46939 * 90.00393 * 15 13 11 17 17 H 1.48494 * 109.47250 * 209.99987 * 15 13 11 18 18 H 1.48500 * 109.47518 * 330.00364 * 15 13 11 19 19 C 1.47020 * 125.64983 * 179.97438 * 6 4 2 20 20 C 1.52999 * 109.47301 * 120.00382 * 2 1 3 21 21 C 1.53000 * 109.46962 * 179.97438 * 20 2 1 22 22 C 1.52996 * 109.46925 * 299.99694 * 20 2 1 23 23 C 1.52995 * 109.47136 * 59.99811 * 20 2 1 24 24 H 1.09004 * 109.47168 * 179.97438 * 1 2 3 25 25 H 1.09006 * 109.46981 * 299.99228 * 1 2 3 26 26 H 1.09003 * 109.47623 * 59.99575 * 1 2 3 27 27 H 1.09003 * 110.29227 * 37.02448 * 7 6 4 28 28 H 1.08996 * 110.53057 * 274.75660 * 7 6 4 29 29 H 1.08994 * 111.00889 * 279.01887 * 8 7 6 30 30 H 1.09006 * 111.00238 * 155.16698 * 8 7 6 31 31 H 0.96704 * 113.99611 * 66.48128 * 10 9 8 32 32 H 0.96999 * 119.99465 * 179.97438 * 14 13 11 33 33 H 1.09002 * 109.88367 * 61.60808 * 19 6 4 34 34 H 1.09000 * 109.88319 * 300.59426 * 19 6 4 35 35 H 1.09004 * 109.47245 * 60.00359 * 21 20 2 36 36 H 1.08996 * 109.47094 * 179.97438 * 21 20 2 37 37 H 1.08998 * 109.47454 * 300.00047 * 21 20 2 38 38 H 1.08999 * 109.47200 * 60.00229 * 22 20 2 39 39 H 1.08998 * 109.47111 * 179.97438 * 22 20 2 40 40 H 1.09004 * 109.47567 * 299.99816 * 22 20 2 41 41 H 1.09002 * 109.47379 * 60.00154 * 23 20 2 42 42 H 1.09003 * 109.47010 * 179.97438 * 23 20 2 43 43 H 1.08999 * 109.47167 * 299.99880 * 23 20 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0322 -0.7103 -1.2305 5 8 2.7296 -1.6964 -1.1193 6 7 1.7066 -0.2498 -2.4547 7 6 0.8679 0.9329 -2.7386 8 6 1.2955 1.3916 -4.1551 9 6 1.5418 0.0323 -4.8616 10 8 0.3137 -0.5171 -5.3432 11 6 2.5349 0.1873 -5.9844 12 1 3.5025 -0.2880 -5.9189 13 6 2.2082 0.9357 -7.0953 14 7 1.0302 1.5148 -7.1748 15 14 3.4395 1.1284 -8.4868 16 1 3.2463 0.0355 -9.4735 17 1 3.2325 2.4391 -9.1531 18 1 4.8187 1.0634 -7.9400 19 6 2.1265 -0.8427 -3.7328 20 6 2.0400 -0.7213 1.2492 21 6 3.5700 -0.7218 1.2488 22 6 1.5301 -0.0001 2.4984 23 6 1.5300 -2.1638 1.2491 24 1 -0.3634 -1.0277 -0.0005 25 1 -0.3633 0.5137 0.8901 26 1 -0.3634 0.5139 -0.8899 27 1 1.0642 1.7193 -2.0099 28 1 -0.1882 0.6636 -2.7297 29 1 2.2105 1.9825 -4.1149 30 1 0.4950 1.9467 -4.6443 31 1 -0.0947 -0.0042 -6.0540 32 1 0.8005 2.0417 -7.9562 33 1 1.7411 -1.8590 -3.8144 34 1 3.2145 -0.8527 -3.7972 35 1 3.9338 0.3057 1.2487 36 1 3.9334 -1.2353 2.1389 37 1 3.9330 -1.2358 0.3588 38 1 0.4401 -0.0001 2.4985 39 1 1.8931 -0.5142 3.3884 40 1 1.8935 1.0276 2.4985 41 1 1.8933 -2.6776 0.3591 42 1 1.8938 -2.6778 2.1389 43 1 0.4401 -2.1638 1.2492 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000592843654.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:51:05 Heat of formation + Delta-G solvation = -114.602629 kcal Electronic energy + Delta-G solvation = -22299.399903 eV Core-core repulsion = 19150.415202 eV Total energy + Delta-G solvation = -3148.984701 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 269.178 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -41.57857 -39.51696 -37.56234 -36.16230 -34.16086 -32.60312 -30.99732 -29.90660 -28.28512 -28.06265 -26.99341 -25.42556 -23.55671 -21.75823 -20.68383 -19.28861 -19.18075 -17.93339 -16.97530 -16.79449 -16.60302 -16.05533 -15.76988 -15.41492 -15.04693 -14.77160 -14.42254 -14.32255 -13.90321 -13.50771 -13.41692 -13.24673 -13.10528 -12.86120 -12.83960 -12.72422 -12.55403 -12.41956 -12.35079 -12.25425 -12.12803 -11.97811 -11.85707 -11.38824 -11.33327 -11.25908 -10.67068 -10.32204 -10.13500 -9.54111 -8.26939 -6.40974 1.40573 1.43783 1.52356 1.69431 2.08778 2.39091 2.98631 3.53128 3.70504 3.89299 3.89824 4.00957 4.18036 4.31103 4.36991 4.39053 4.48738 4.58193 4.60291 4.67174 4.85513 4.86156 4.88511 4.91773 4.96247 5.05138 5.10305 5.14999 5.19246 5.24144 5.29327 5.30951 5.43519 5.48273 5.51734 5.60981 5.69017 5.75522 6.05424 6.60180 6.71296 7.25558 7.30366 7.44006 8.79545 Molecular weight = 269.18amu Principal moments of inertia in cm(-1) A = 0.036623 B = 0.004715 C = 0.004532 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 764.372145 B = 5936.466807 C = 6176.812268 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.090 4.090 3 H 0.108 0.892 4 C 0.519 3.481 5 O -0.574 6.574 6 N -0.613 5.613 7 C 0.108 3.892 8 C -0.130 4.130 9 C 0.236 3.764 10 O -0.595 6.595 11 C -0.565 4.565 12 H 0.050 0.950 13 C 0.038 3.962 14 N -0.907 5.907 15 Si 0.959 3.041 16 H -0.278 1.278 17 H -0.275 1.275 18 H -0.275 1.275 19 C 0.129 3.871 20 C -0.046 4.046 21 C -0.152 4.152 22 C -0.136 4.136 23 C -0.152 4.152 24 H 0.052 0.948 25 H 0.097 0.903 26 H 0.065 0.935 27 H 0.098 0.902 28 H 0.074 0.926 29 H 0.058 0.942 30 H 0.076 0.924 31 H 0.382 0.618 32 H 0.273 0.727 33 H 0.038 0.962 34 H 0.054 0.946 35 H 0.054 0.946 36 H 0.059 0.941 37 H 0.050 0.950 38 H 0.070 0.930 39 H 0.062 0.938 40 H 0.064 0.936 41 H 0.049 0.951 42 H 0.057 0.943 43 H 0.058 0.942 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.442 2.654 15.322 15.741 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.111 4.111 3 H 0.126 0.874 4 C 0.310 3.690 5 O -0.455 6.455 6 N -0.345 5.345 7 C -0.014 4.014 8 C -0.169 4.169 9 C 0.196 3.804 10 O -0.405 6.405 11 C -0.603 4.603 12 H 0.069 0.931 13 C -0.163 4.163 14 N -0.547 5.547 15 Si 0.785 3.215 16 H -0.204 1.204 17 H -0.200 1.200 18 H -0.200 1.200 19 C 0.006 3.994 20 C -0.046 4.046 21 C -0.210 4.210 22 C -0.193 4.193 23 C -0.209 4.209 24 H 0.071 0.929 25 H 0.116 0.884 26 H 0.084 0.916 27 H 0.116 0.884 28 H 0.092 0.908 29 H 0.076 0.924 30 H 0.095 0.905 31 H 0.234 0.766 32 H 0.083 0.917 33 H 0.057 0.943 34 H 0.073 0.927 35 H 0.073 0.927 36 H 0.078 0.922 37 H 0.069 0.931 38 H 0.089 0.911 39 H 0.081 0.919 40 H 0.083 0.917 41 H 0.068 0.932 42 H 0.076 0.924 43 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges -2.049 1.782 15.801 16.033 hybrid contribution 0.682 0.233 -1.795 1.934 sum -1.366 2.014 14.006 14.216 Atomic orbital electron populations 1.22047 0.91712 1.02848 1.04307 1.21377 0.98593 1.00435 0.90654 0.87382 1.21170 0.79508 0.84310 0.83969 1.90534 1.40307 1.28443 1.86252 1.48829 1.50690 1.29995 1.05033 1.22603 0.94440 0.86811 0.97556 1.23125 1.01041 0.98831 0.93897 1.19567 0.82712 0.88472 0.89649 1.86085 1.39760 1.56725 1.57928 1.21769 1.01313 1.32805 1.04393 0.93129 1.25574 0.97222 0.93642 0.99845 1.69622 1.21232 1.33253 1.30590 0.85543 0.79261 0.77685 0.79040 1.20382 1.20004 1.19966 1.21728 0.97940 0.96468 0.83252 1.20307 0.95390 0.95367 0.93581 1.22068 0.95189 1.01484 1.02216 1.21899 1.01791 1.00231 0.95381 1.22101 1.00713 0.96074 1.02034 0.92892 0.88412 0.91579 0.88384 0.90815 0.92351 0.90500 0.76620 0.91706 0.94334 0.92721 0.92735 0.92189 0.93096 0.91142 0.91866 0.91692 0.93243 0.92362 0.92278 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.20 8.30 71.98 0.60 -2.60 16 2 C -0.09 -2.26 1.46 -11.54 -0.02 -2.27 16 3 H 0.11 2.38 7.86 -2.38 -0.02 2.36 16 4 C 0.52 18.61 6.63 87.66 0.58 19.19 16 5 O -0.57 -24.11 11.67 -3.06 -0.04 -24.14 16 6 N -0.61 -23.69 3.33 -810.98 -2.70 -26.39 16 7 C 0.11 3.63 5.14 86.79 0.45 4.07 16 8 C -0.13 -5.48 5.67 31.99 0.18 -5.30 16 9 C 0.24 11.53 0.86 -10.35 -0.01 11.52 16 10 O -0.59 -30.46 13.09 -148.98 -1.95 -32.41 16 11 C -0.56 -30.07 8.21 25.60 0.21 -29.86 16 12 H 0.05 2.75 7.53 -2.91 -0.02 2.73 16 13 C 0.04 1.96 5.28 84.66 0.45 2.41 16 14 N -0.91 -46.04 10.70 21.45 0.23 -45.81 16 15 Si 0.96 41.28 29.54 68.60 2.03 43.30 16 16 H -0.28 -11.93 7.11 99.48 0.71 -11.22 16 17 H -0.28 -11.35 7.11 99.48 0.71 -10.65 16 18 H -0.27 -11.85 7.11 99.48 0.71 -11.14 16 19 C 0.13 6.03 6.21 86.73 0.54 6.56 16 20 C -0.05 -1.06 0.54 -52.18 -0.03 -1.09 16 21 C -0.15 -3.91 8.18 71.98 0.59 -3.32 16 22 C -0.14 -2.18 8.12 71.98 0.58 -1.60 16 23 C -0.15 -3.89 7.82 71.98 0.56 -3.33 16 24 H 0.05 1.22 6.43 -2.38 -0.02 1.21 16 25 H 0.10 1.46 6.43 -2.38 -0.02 1.44 16 26 H 0.07 1.44 5.01 -2.39 -0.01 1.42 16 27 H 0.10 2.58 7.38 -2.39 -0.02 2.56 16 28 H 0.07 2.39 7.09 -2.39 -0.02 2.37 16 29 H 0.06 2.52 8.04 -2.39 -0.02 2.50 16 30 H 0.08 3.34 7.77 -2.38 -0.02 3.32 16 31 H 0.38 19.69 6.99 -74.05 -0.52 19.17 16 32 H 0.27 13.14 8.31 -92.71 -0.77 12.37 16 33 H 0.04 1.90 8.07 -2.39 -0.02 1.88 16 34 H 0.05 2.65 7.63 -2.39 -0.02 2.64 16 35 H 0.05 1.25 8.14 -2.39 -0.02 1.23 16 36 H 0.06 1.35 8.14 -2.39 -0.02 1.33 16 37 H 0.05 1.69 5.51 -2.39 -0.01 1.67 16 38 H 0.07 0.97 6.43 -2.39 -0.02 0.95 16 39 H 0.06 0.93 8.14 -2.39 -0.02 0.91 16 40 H 0.06 0.92 8.14 -2.39 -0.02 0.90 16 41 H 0.05 1.64 5.51 -2.39 -0.01 1.63 16 42 H 0.06 1.31 8.14 -2.39 -0.02 1.29 16 43 H 0.06 1.35 6.43 -2.39 -0.02 1.34 16 Total: -1.00 -59.56 321.20 2.74 -56.82 By element: Atomic # 1 Polarization: 33.75 SS G_CDS: 0.49 Total: 34.24 kcal Atomic # 6 Polarization: -10.29 SS G_CDS: 4.68 Total: -5.61 kcal Atomic # 7 Polarization: -69.73 SS G_CDS: -2.47 Total: -72.20 kcal Atomic # 8 Polarization: -54.57 SS G_CDS: -1.99 Total: -56.55 kcal Atomic # 14 Polarization: 41.28 SS G_CDS: 2.03 Total: 43.30 kcal Total: -59.56 2.74 -56.82 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000592843654.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -57.781 kcal (2) G-P(sol) polarization free energy of solvation -59.559 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -117.340 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.738 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -56.822 kcal (6) G-S(sol) free energy of system = (1) + (5) -114.603 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds