Wall clock time and date at job start Mon Mar 30 2020 00:51:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.09000 * 109.47368 * 2 1 4 4 C 1.50700 * 109.47045 * 240.00310 * 2 1 3 5 5 O 1.21279 * 119.99851 * 252.71576 * 4 2 1 6 6 N 1.34773 * 120.00383 * 72.71904 * 4 2 1 7 7 C 1.47028 * 125.64354 * 354.96372 * 6 4 2 8 8 C 1.54327 * 107.26709 * 178.97717 * 7 6 4 9 9 C 1.55147 * 102.94632 * 337.80910 * 8 7 6 10 10 O 1.42896 * 111.00778 * 277.42580 * 9 8 7 11 11 C 1.50701 * 111.03605 * 153.58856 * 9 8 7 12 12 H 1.08000 * 119.99857 * 247.78109 * 11 9 8 13 13 C 1.37873 * 120.00358 * 67.79110 * 11 9 8 14 14 N 1.31522 * 119.99623 * 359.97438 * 13 11 9 15 15 Si 1.86790 * 120.00447 * 179.97438 * 13 11 9 16 16 H 1.48497 * 109.47250 * 359.97438 * 15 13 11 17 17 H 1.48505 * 109.47245 * 119.99521 * 15 13 11 18 18 H 1.48500 * 109.47456 * 239.99706 * 15 13 11 19 19 C 1.47419 * 125.65519 * 175.00925 * 6 4 2 20 20 C 1.53004 * 109.47151 * 120.00151 * 2 1 3 21 21 C 1.52994 * 109.47081 * 179.97438 * 20 2 1 22 22 C 1.52991 * 109.46840 * 300.00054 * 20 2 1 23 23 C 1.53004 * 109.46795 * 60.00159 * 20 2 1 24 24 H 1.09000 * 109.47066 * 54.62452 * 1 2 3 25 25 H 1.08998 * 109.47010 * 174.61754 * 1 2 3 26 26 H 1.08995 * 109.47059 * 294.62147 * 1 2 3 27 27 H 1.09004 * 109.88374 * 59.56681 * 7 6 4 28 28 H 1.08994 * 110.01329 * 298.47057 * 7 6 4 29 29 H 1.09003 * 110.72023 * 219.44270 * 8 7 6 30 30 H 1.09006 * 110.87168 * 96.25010 * 8 7 6 31 31 H 0.96698 * 113.99999 * 292.20017 * 10 9 8 32 32 H 0.96999 * 120.00046 * 180.02562 * 14 13 11 33 33 H 1.09009 * 110.36729 * 85.24903 * 19 6 4 34 34 H 1.08997 * 110.36715 * 322.93434 * 19 6 4 35 35 H 1.09000 * 109.47304 * 59.99931 * 21 20 2 36 36 H 1.08997 * 109.47283 * 180.02562 * 21 20 2 37 37 H 1.09000 * 109.47595 * 300.00415 * 21 20 2 38 38 H 1.09000 * 109.47507 * 60.00402 * 22 20 2 39 39 H 1.09008 * 109.46747 * 179.97438 * 22 20 2 40 40 H 1.09003 * 109.47473 * 299.99725 * 22 20 2 41 41 H 1.09000 * 109.47196 * 59.99677 * 23 20 2 42 42 H 1.09000 * 109.46788 * 180.02562 * 23 20 2 43 43 H 1.09000 * 109.46875 * 299.99735 * 23 20 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0323 -0.7103 -1.2305 5 8 2.5287 -1.8127 -1.1341 6 7 1.9301 -0.1206 -2.4380 7 6 1.2604 1.1592 -2.7126 8 6 1.4181 1.4443 -4.2211 9 6 2.6540 0.5904 -4.6089 10 8 3.8685 1.2762 -4.2979 11 6 2.6113 0.2074 -6.0658 12 1 2.4671 -0.8248 -6.3488 13 6 2.7566 1.1747 -7.0375 14 7 2.9319 2.4318 -6.6929 15 14 2.7043 0.6999 -8.8433 16 1 2.4982 -0.7657 -8.9640 17 1 1.5864 1.4141 -9.5108 18 1 3.9874 1.0738 -9.4908 19 6 2.4703 -0.6523 -3.7025 20 6 2.0401 -0.7213 1.2493 21 6 3.5700 -0.7219 1.2489 22 6 1.5300 -0.0001 2.4984 23 6 1.5300 -2.1638 1.2491 24 1 -0.3633 0.5949 -0.8379 25 1 -0.3633 -1.0231 -0.0964 26 1 -0.3633 0.4281 0.9342 27 1 1.7298 1.9548 -2.1340 28 1 0.2032 1.0893 -2.4570 29 1 1.6106 2.5029 -4.3954 30 1 0.5359 1.1185 -4.7722 31 1 4.0267 2.0613 -4.8397 32 1 3.0337 3.1124 -7.3765 33 1 1.7641 -1.3496 -4.1533 34 1 3.4292 -1.1409 -3.5297 35 1 3.9337 0.3057 1.2487 36 1 3.9334 -1.2361 2.1386 37 1 3.9330 -1.2358 0.3589 38 1 0.4400 -0.0001 2.4985 39 1 1.8930 -0.5143 3.3884 40 1 1.8934 1.0276 2.4985 41 1 1.8933 -2.6776 0.3591 42 1 1.8930 -2.6776 2.1393 43 1 0.4400 -2.1638 1.2491 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000592843655.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:51:08 Heat of formation + Delta-G solvation = -97.979736 kcal Electronic energy + Delta-G solvation = -22308.299244 eV Core-core repulsion = 19160.035366 eV Total energy + Delta-G solvation = -3148.263878 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 269.178 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -40.17133 -37.93687 -36.19461 -34.36745 -32.16131 -31.31555 -29.54282 -28.24558 -27.26971 -27.03369 -25.28480 -24.05781 -22.10299 -20.01374 -19.23458 -18.00561 -17.21970 -16.66404 -15.45320 -15.00294 -14.90608 -14.59395 -14.30389 -14.15863 -13.81235 -13.55292 -13.03767 -12.59303 -12.52286 -12.11137 -12.02619 -11.86809 -11.74038 -11.69572 -11.36001 -11.33227 -11.29955 -10.95643 -10.87568 -10.77998 -10.63524 -10.47621 -10.37870 -10.28173 -10.03792 -9.43791 -8.89767 -8.68775 -8.22446 -7.92736 -6.32445 -4.40020 3.12697 3.16807 3.26101 3.30477 3.60190 4.24426 4.69492 4.84774 4.91909 4.96858 5.24481 5.39215 5.45855 5.50727 5.55945 5.70151 5.72738 5.76546 5.83168 5.85999 5.95394 5.97885 6.02973 6.05386 6.12684 6.24993 6.27156 6.31030 6.42445 6.45336 6.63884 6.65054 6.81012 6.88410 7.01943 7.28484 7.30971 7.71453 7.97637 8.20681 8.62253 8.74075 9.29249 9.45803 10.75342 Molecular weight = 269.18amu Principal moments of inertia in cm(-1) A = 0.039935 B = 0.004620 C = 0.004547 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 700.966670 B = 6059.117745 C = 6156.322251 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.098 4.098 3 H 0.089 0.911 4 C 0.530 3.470 5 O -0.547 6.547 6 N -0.606 5.606 7 C 0.099 3.901 8 C -0.140 4.140 9 C 0.249 3.751 10 O -0.585 6.585 11 C -0.535 4.535 12 H 0.066 0.934 13 C 0.072 3.928 14 N -0.898 5.898 15 Si 0.904 3.096 16 H -0.271 1.271 17 H -0.282 1.282 18 H -0.282 1.282 19 C 0.120 3.880 20 C -0.046 4.046 21 C -0.148 4.148 22 C -0.143 4.143 23 C -0.161 4.161 24 H 0.063 0.937 25 H 0.061 0.939 26 H 0.067 0.933 27 H 0.056 0.944 28 H 0.055 0.945 29 H 0.082 0.918 30 H 0.067 0.933 31 H 0.385 0.615 32 H 0.269 0.731 33 H 0.069 0.931 34 H 0.069 0.931 35 H 0.046 0.954 36 H 0.050 0.950 37 H 0.074 0.926 38 H 0.057 0.943 39 H 0.054 0.946 40 H 0.052 0.948 41 H 0.098 0.902 42 H 0.042 0.958 43 H 0.045 0.955 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.071 -0.698 12.384 13.400 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.119 4.119 3 H 0.107 0.893 4 C 0.319 3.681 5 O -0.427 6.427 6 N -0.337 5.337 7 C -0.024 4.024 8 C -0.179 4.179 9 C 0.208 3.792 10 O -0.395 6.395 11 C -0.573 4.573 12 H 0.084 0.916 13 C -0.130 4.130 14 N -0.538 5.538 15 Si 0.731 3.269 16 H -0.196 1.196 17 H -0.208 1.208 18 H -0.207 1.207 19 C -0.002 4.002 20 C -0.047 4.047 21 C -0.206 4.206 22 C -0.200 4.200 23 C -0.218 4.218 24 H 0.081 0.919 25 H 0.080 0.920 26 H 0.086 0.914 27 H 0.075 0.925 28 H 0.073 0.927 29 H 0.101 0.899 30 H 0.086 0.914 31 H 0.237 0.763 32 H 0.079 0.921 33 H 0.087 0.913 34 H 0.088 0.912 35 H 0.066 0.934 36 H 0.069 0.931 37 H 0.093 0.907 38 H 0.076 0.924 39 H 0.073 0.927 40 H 0.071 0.929 41 H 0.117 0.883 42 H 0.062 0.938 43 H 0.064 0.936 Dipole moment (debyes) X Y Z Total from point charges -4.729 -1.607 12.861 13.797 hybrid contribution -0.172 0.562 -1.420 1.537 sum -4.901 -1.045 11.442 12.491 Atomic orbital electron populations 1.21918 0.93410 1.02750 1.02553 1.21293 0.97265 1.00308 0.93019 0.89330 1.20144 0.78832 0.85734 0.83377 1.90487 1.46594 1.20214 1.85394 1.48633 1.54871 1.22675 1.07550 1.22212 0.95361 0.85184 0.99608 1.23206 1.01421 1.02820 0.90450 1.19582 0.81644 0.86522 0.91457 1.86096 1.42304 1.46310 1.64770 1.21538 1.50559 0.94954 0.90252 0.91594 1.24991 0.93511 0.94700 0.99813 1.69574 1.49581 1.00424 1.34250 0.86348 0.77777 0.78902 0.83878 1.19553 1.20797 1.20740 1.22358 0.98173 0.97298 0.82363 1.20264 0.95886 0.95868 0.92638 1.21987 0.94412 1.01300 1.02855 1.21961 1.00959 1.00019 0.97041 1.22320 1.00005 0.95588 1.03871 0.91861 0.91992 0.91426 0.92517 0.92662 0.89949 0.91397 0.76270 0.92126 0.91287 0.91243 0.93444 0.93123 0.90696 0.92449 0.92713 0.92859 0.88335 0.93847 0.93603 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.79 8.33 37.16 0.31 -1.48 16 2 C -0.10 -1.39 1.49 -91.77 -0.14 -1.52 16 3 H 0.09 1.23 7.83 -51.93 -0.41 0.82 16 4 C 0.53 9.74 6.41 -10.99 -0.07 9.67 16 5 O -0.55 -11.28 11.86 5.56 0.07 -11.21 16 6 N -0.61 -11.86 3.33 -170.52 -0.57 -12.42 16 7 C 0.10 1.77 6.05 -3.06 -0.02 1.75 16 8 C -0.14 -2.96 5.64 -24.90 -0.14 -3.10 16 9 C 0.25 5.95 0.89 -89.63 -0.08 5.87 16 10 O -0.58 -14.94 13.18 -35.23 -0.46 -15.40 16 11 C -0.53 -13.80 8.25 -34.44 -0.28 -14.08 16 12 H 0.07 1.70 7.77 -52.49 -0.41 1.29 16 13 C 0.07 1.83 5.30 -17.82 -0.09 1.73 16 14 N -0.90 -22.90 10.79 55.43 0.60 -22.31 16 15 Si 0.90 19.99 29.54 -169.99 -5.02 14.97 16 16 H -0.27 -6.00 7.11 56.52 0.40 -5.60 16 17 H -0.28 -6.18 7.11 56.52 0.40 -5.78 16 18 H -0.28 -6.25 7.11 56.52 0.40 -5.85 16 19 C 0.12 2.67 6.06 -2.53 -0.02 2.66 16 20 C -0.05 -0.61 0.54 -154.51 -0.08 -0.69 16 21 C -0.15 -2.09 8.18 37.15 0.30 -1.78 16 22 C -0.14 -1.49 8.13 37.15 0.30 -1.19 16 23 C -0.16 -2.19 7.82 37.16 0.29 -1.90 16 24 H 0.06 0.75 5.69 -51.93 -0.30 0.46 16 25 H 0.06 0.77 6.73 -51.93 -0.35 0.42 16 26 H 0.07 0.67 6.16 -51.93 -0.32 0.35 16 27 H 0.06 0.96 7.93 -51.93 -0.41 0.55 16 28 H 0.06 0.85 6.14 -51.93 -0.32 0.53 16 29 H 0.08 1.82 7.85 -51.93 -0.41 1.41 16 30 H 0.07 1.43 8.03 -51.93 -0.42 1.02 16 31 H 0.39 9.93 6.93 45.56 0.32 10.25 16 32 H 0.27 6.54 8.31 -40.82 -0.34 6.21 16 33 H 0.07 1.50 8.02 -51.92 -0.42 1.08 16 34 H 0.07 1.65 8.09 -51.93 -0.42 1.23 16 35 H 0.05 0.63 8.14 -51.93 -0.42 0.21 16 36 H 0.05 0.63 8.14 -51.93 -0.42 0.21 16 37 H 0.07 1.27 5.99 -51.93 -0.31 0.96 16 38 H 0.06 0.54 6.31 -51.93 -0.33 0.22 16 39 H 0.05 0.53 8.14 -51.92 -0.42 0.11 16 40 H 0.05 0.53 8.14 -51.93 -0.42 0.10 16 41 H 0.10 1.64 5.09 -51.93 -0.26 1.37 16 42 H 0.04 0.53 8.14 -51.93 -0.42 0.11 16 43 H 0.04 0.57 6.55 -51.93 -0.34 0.23 16 LS Contribution 323.22 15.07 4.87 4.87 Total: -1.00 -27.09 323.22 -6.58 -33.67 By element: Atomic # 1 Polarization: 18.25 SS G_CDS: -6.35 Total: 11.90 kcal Atomic # 6 Polarization: -4.35 SS G_CDS: 0.28 Total: -4.06 kcal Atomic # 7 Polarization: -34.76 SS G_CDS: 0.03 Total: -34.73 kcal Atomic # 8 Polarization: -26.22 SS G_CDS: -0.40 Total: -26.61 kcal Atomic # 14 Polarization: 19.99 SS G_CDS: -5.02 Total: 14.97 kcal Total LS contribution 4.87 Total: 4.87 kcal Total: -27.09 -6.58 -33.67 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000592843655.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -64.311 kcal (2) G-P(sol) polarization free energy of solvation -27.087 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -91.398 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.582 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -33.669 kcal (6) G-S(sol) free energy of system = (1) + (5) -97.980 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds