Wall clock time and date at job start Mon Mar 30 2020 00:51:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.09000 * 109.47368 * 2 1 4 4 C 1.50700 * 109.47045 * 240.00310 * 2 1 3 5 5 O 1.21279 * 119.99851 * 252.71576 * 4 2 1 6 6 N 1.34773 * 120.00383 * 72.71904 * 4 2 1 7 7 C 1.47028 * 125.64354 * 354.96372 * 6 4 2 8 8 C 1.54327 * 107.26709 * 178.97717 * 7 6 4 9 9 C 1.55147 * 102.94632 * 337.80910 * 8 7 6 10 10 O 1.42896 * 111.00778 * 277.42580 * 9 8 7 11 11 C 1.50701 * 111.03605 * 153.58856 * 9 8 7 12 12 H 1.08000 * 119.99857 * 247.78109 * 11 9 8 13 13 C 1.37873 * 120.00358 * 67.79110 * 11 9 8 14 14 N 1.31522 * 119.99623 * 359.97438 * 13 11 9 15 15 Si 1.86790 * 120.00447 * 179.97438 * 13 11 9 16 16 H 1.48497 * 109.47250 * 359.97438 * 15 13 11 17 17 H 1.48505 * 109.47245 * 119.99521 * 15 13 11 18 18 H 1.48500 * 109.47456 * 239.99706 * 15 13 11 19 19 C 1.47419 * 125.65519 * 175.00925 * 6 4 2 20 20 C 1.53004 * 109.47151 * 120.00151 * 2 1 3 21 21 C 1.52994 * 109.47081 * 179.97438 * 20 2 1 22 22 C 1.52991 * 109.46840 * 300.00054 * 20 2 1 23 23 C 1.53004 * 109.46795 * 60.00159 * 20 2 1 24 24 H 1.09000 * 109.47066 * 54.62452 * 1 2 3 25 25 H 1.08998 * 109.47010 * 174.61754 * 1 2 3 26 26 H 1.08995 * 109.47059 * 294.62147 * 1 2 3 27 27 H 1.09004 * 109.88374 * 59.56681 * 7 6 4 28 28 H 1.08994 * 110.01329 * 298.47057 * 7 6 4 29 29 H 1.09003 * 110.72023 * 219.44270 * 8 7 6 30 30 H 1.09006 * 110.87168 * 96.25010 * 8 7 6 31 31 H 0.96698 * 113.99999 * 292.20017 * 10 9 8 32 32 H 0.96999 * 120.00046 * 180.02562 * 14 13 11 33 33 H 1.09009 * 110.36729 * 85.24903 * 19 6 4 34 34 H 1.08997 * 110.36715 * 322.93434 * 19 6 4 35 35 H 1.09000 * 109.47304 * 59.99931 * 21 20 2 36 36 H 1.08997 * 109.47283 * 180.02562 * 21 20 2 37 37 H 1.09000 * 109.47595 * 300.00415 * 21 20 2 38 38 H 1.09000 * 109.47507 * 60.00402 * 22 20 2 39 39 H 1.09008 * 109.46747 * 179.97438 * 22 20 2 40 40 H 1.09003 * 109.47473 * 299.99725 * 22 20 2 41 41 H 1.09000 * 109.47196 * 59.99677 * 23 20 2 42 42 H 1.09000 * 109.46788 * 180.02562 * 23 20 2 43 43 H 1.09000 * 109.46875 * 299.99735 * 23 20 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0323 -0.7103 -1.2305 5 8 2.5287 -1.8127 -1.1341 6 7 1.9301 -0.1206 -2.4380 7 6 1.2604 1.1592 -2.7126 8 6 1.4181 1.4443 -4.2211 9 6 2.6540 0.5904 -4.6089 10 8 3.8685 1.2762 -4.2979 11 6 2.6113 0.2074 -6.0658 12 1 2.4671 -0.8248 -6.3488 13 6 2.7566 1.1747 -7.0375 14 7 2.9319 2.4318 -6.6929 15 14 2.7043 0.6999 -8.8433 16 1 2.4982 -0.7657 -8.9640 17 1 1.5864 1.4141 -9.5108 18 1 3.9874 1.0738 -9.4908 19 6 2.4703 -0.6523 -3.7025 20 6 2.0401 -0.7213 1.2493 21 6 3.5700 -0.7219 1.2489 22 6 1.5300 -0.0001 2.4984 23 6 1.5300 -2.1638 1.2491 24 1 -0.3633 0.5949 -0.8379 25 1 -0.3633 -1.0231 -0.0964 26 1 -0.3633 0.4281 0.9342 27 1 1.7298 1.9548 -2.1340 28 1 0.2032 1.0893 -2.4570 29 1 1.6106 2.5029 -4.3954 30 1 0.5359 1.1185 -4.7722 31 1 4.0267 2.0613 -4.8397 32 1 3.0337 3.1124 -7.3765 33 1 1.7641 -1.3496 -4.1533 34 1 3.4292 -1.1409 -3.5297 35 1 3.9337 0.3057 1.2487 36 1 3.9334 -1.2361 2.1386 37 1 3.9330 -1.2358 0.3589 38 1 0.4400 -0.0001 2.4985 39 1 1.8930 -0.5143 3.3884 40 1 1.8934 1.0276 2.4985 41 1 1.8933 -2.6776 0.3591 42 1 1.8930 -2.6776 2.1393 43 1 0.4400 -2.1638 1.2491 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000592843655.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:51:07 Heat of formation + Delta-G solvation = -115.090638 kcal Electronic energy + Delta-G solvation = -22309.041228 eV Core-core repulsion = 19160.035366 eV Total energy + Delta-G solvation = -3149.005863 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 269.178 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -41.55483 -39.51154 -37.54773 -36.12501 -34.14729 -32.57959 -31.08603 -29.92325 -28.33336 -28.02633 -27.00705 -25.34511 -23.58582 -21.70433 -20.72701 -19.32510 -19.06195 -18.09215 -17.01480 -16.82346 -16.28473 -16.06614 -15.74359 -15.44350 -15.19360 -14.86345 -14.42515 -14.09784 -14.02232 -13.63995 -13.30099 -13.19067 -13.14819 -12.98682 -12.87244 -12.70974 -12.56426 -12.49607 -12.38737 -12.25093 -12.04556 -11.90470 -11.82449 -11.40657 -11.35002 -11.26327 -10.67687 -10.27435 -10.13231 -9.49380 -8.26443 -6.40982 1.40251 1.44787 1.54698 1.70608 2.11861 2.39849 2.98639 3.53975 3.70479 3.84611 3.89852 4.02928 4.19857 4.30234 4.36279 4.37877 4.49938 4.57429 4.61217 4.67242 4.82455 4.85835 4.87328 4.89095 4.96851 5.03425 5.09813 5.14542 5.18985 5.24894 5.27102 5.35145 5.43593 5.43871 5.51957 5.59674 5.72973 5.76741 6.05409 6.62057 6.72877 7.27943 7.30914 7.44653 8.80197 Molecular weight = 269.18amu Principal moments of inertia in cm(-1) A = 0.039935 B = 0.004620 C = 0.004547 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 700.966670 B = 6059.117745 C = 6156.322251 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.091 4.091 3 H 0.098 0.902 4 C 0.521 3.479 5 O -0.575 6.575 6 N -0.612 5.612 7 C 0.107 3.893 8 C -0.131 4.131 9 C 0.235 3.765 10 O -0.596 6.596 11 C -0.562 4.562 12 H 0.055 0.945 13 C 0.037 3.963 14 N -0.910 5.910 15 Si 0.961 3.039 16 H -0.274 1.274 17 H -0.274 1.274 18 H -0.280 1.280 19 C 0.126 3.874 20 C -0.047 4.047 21 C -0.148 4.148 22 C -0.136 4.136 23 C -0.158 4.158 24 H 0.066 0.934 25 H 0.054 0.946 26 H 0.097 0.903 27 H 0.070 0.930 28 H 0.090 0.910 29 H 0.071 0.929 30 H 0.064 0.936 31 H 0.381 0.619 32 H 0.273 0.727 33 H 0.068 0.932 34 H 0.042 0.958 35 H 0.052 0.948 36 H 0.064 0.936 37 H 0.036 0.964 38 H 0.072 0.928 39 H 0.063 0.937 40 H 0.061 0.939 41 H 0.063 0.937 42 H 0.054 0.946 43 H 0.058 0.942 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.665 0.287 13.883 15.402 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.112 4.112 3 H 0.116 0.884 4 C 0.313 3.687 5 O -0.456 6.456 6 N -0.344 5.344 7 C -0.015 4.015 8 C -0.170 4.170 9 C 0.194 3.806 10 O -0.406 6.406 11 C -0.600 4.600 12 H 0.073 0.927 13 C -0.164 4.164 14 N -0.550 5.550 15 Si 0.787 3.213 16 H -0.199 1.199 17 H -0.199 1.199 18 H -0.206 1.206 19 C 0.003 3.997 20 C -0.048 4.048 21 C -0.205 4.205 22 C -0.193 4.193 23 C -0.215 4.215 24 H 0.085 0.915 25 H 0.073 0.927 26 H 0.116 0.884 27 H 0.088 0.912 28 H 0.108 0.892 29 H 0.089 0.911 30 H 0.083 0.917 31 H 0.232 0.768 32 H 0.082 0.918 33 H 0.086 0.914 34 H 0.061 0.939 35 H 0.071 0.929 36 H 0.083 0.917 37 H 0.056 0.944 38 H 0.091 0.909 39 H 0.082 0.918 40 H 0.080 0.920 41 H 0.082 0.918 42 H 0.073 0.927 43 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges -6.335 -0.614 14.381 15.726 hybrid contribution 0.390 0.202 -1.884 1.935 sum -5.944 -0.412 12.497 13.845 Atomic orbital electron populations 1.21937 0.91218 1.02728 1.04334 1.21379 0.98944 1.00069 0.90846 0.88372 1.21101 0.78062 0.85592 0.83987 1.90503 1.47559 1.21717 1.85811 1.48740 1.55309 1.23283 1.07092 1.22230 0.97374 0.84658 0.97229 1.22999 0.99695 1.01385 0.92915 1.19763 0.82119 0.87541 0.91131 1.86083 1.43572 1.46233 1.64704 1.21757 1.51751 0.94750 0.91784 0.92663 1.25608 0.93033 0.94698 1.03099 1.69629 1.49223 1.00847 1.35307 0.85459 0.77839 0.78361 0.79653 1.19861 1.19893 1.20618 1.22084 0.97058 0.96676 0.83910 1.20327 0.94983 0.95818 0.93630 1.21965 0.95589 1.01264 1.01664 1.21908 1.01891 1.00113 0.95411 1.22233 1.00775 0.95827 1.02635 0.91549 0.92659 0.88416 0.91200 0.89218 0.91062 0.91691 0.76761 0.91768 0.91429 0.93917 0.92866 0.91728 0.94443 0.90892 0.91784 0.91956 0.91826 0.92740 0.92279 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.97 8.33 71.98 0.60 -2.37 16 2 C -0.09 -2.38 1.49 -11.54 -0.02 -2.40 16 3 H 0.10 2.41 7.83 -2.39 -0.02 2.39 16 4 C 0.52 19.01 6.41 87.66 0.56 19.57 16 5 O -0.57 -24.37 11.86 -3.03 -0.04 -24.41 16 6 N -0.61 -23.83 3.33 -811.79 -2.70 -26.53 16 7 C 0.11 3.64 6.05 86.73 0.52 4.16 16 8 C -0.13 -5.50 5.64 31.78 0.18 -5.32 16 9 C 0.23 11.46 0.89 -10.15 -0.01 11.45 16 10 O -0.60 -31.19 13.18 -148.98 -1.96 -33.16 16 11 C -0.56 -29.63 8.25 25.60 0.21 -29.41 16 12 H 0.06 2.94 7.77 -2.91 -0.02 2.92 16 13 C 0.04 1.86 5.30 84.65 0.45 2.31 16 14 N -0.91 -46.45 10.79 21.45 0.23 -46.22 16 15 Si 0.96 41.02 29.54 68.60 2.03 43.04 16 16 H -0.27 -11.72 7.11 99.48 0.71 -11.01 16 17 H -0.27 -11.25 7.11 99.48 0.71 -10.55 16 18 H -0.28 -11.86 7.11 99.48 0.71 -11.15 16 19 C 0.13 5.78 6.06 86.86 0.53 6.31 16 20 C -0.05 -1.13 0.54 -52.18 -0.03 -1.16 16 21 C -0.15 -4.01 8.18 71.98 0.59 -3.42 16 22 C -0.14 -2.29 8.13 71.98 0.59 -1.70 16 23 C -0.16 -4.06 7.82 71.98 0.56 -3.50 16 24 H 0.07 1.32 5.69 -2.39 -0.01 1.31 16 25 H 0.05 1.22 6.73 -2.39 -0.02 1.20 16 26 H 0.10 1.44 6.16 -2.39 -0.01 1.43 16 27 H 0.07 2.21 7.93 -2.38 -0.02 2.19 16 28 H 0.09 2.46 6.14 -2.39 -0.01 2.44 16 29 H 0.07 3.13 7.85 -2.39 -0.02 3.11 16 30 H 0.06 2.72 8.03 -2.38 -0.02 2.70 16 31 H 0.38 20.11 6.93 -74.06 -0.51 19.60 16 32 H 0.27 13.17 8.31 -92.71 -0.77 12.40 16 33 H 0.07 3.06 8.02 -2.38 -0.02 3.04 16 34 H 0.04 2.14 8.09 -2.39 -0.02 2.12 16 35 H 0.05 1.35 8.14 -2.39 -0.02 1.33 16 36 H 0.06 1.52 8.14 -2.39 -0.02 1.50 16 37 H 0.04 1.29 5.99 -2.39 -0.01 1.28 16 38 H 0.07 1.02 6.31 -2.39 -0.02 1.00 16 39 H 0.06 0.98 8.14 -2.38 -0.02 0.96 16 40 H 0.06 0.96 8.14 -2.39 -0.02 0.94 16 41 H 0.06 2.13 5.09 -2.39 -0.01 2.12 16 42 H 0.05 1.24 8.14 -2.39 -0.02 1.22 16 43 H 0.06 1.33 6.55 -2.39 -0.02 1.32 16 Total: -1.00 -59.74 323.22 2.78 -56.96 By element: Atomic # 1 Polarization: 35.31 SS G_CDS: 0.49 Total: 35.80 kcal Atomic # 6 Polarization: -10.22 SS G_CDS: 4.73 Total: -5.48 kcal Atomic # 7 Polarization: -70.28 SS G_CDS: -2.47 Total: -72.75 kcal Atomic # 8 Polarization: -55.56 SS G_CDS: -2.00 Total: -57.56 kcal Atomic # 14 Polarization: 41.02 SS G_CDS: 2.03 Total: 43.04 kcal Total: -59.74 2.78 -56.96 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000592843655.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -58.134 kcal (2) G-P(sol) polarization free energy of solvation -59.735 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -117.869 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.778 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -56.957 kcal (6) G-S(sol) free energy of system = (1) + (5) -115.091 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds