Wall clock time and date at job start Mon Mar 30 2020 00:48:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09003 * 109.47685 * 2 1 4 4 C 1.53005 * 109.47319 * 119.99440 * 2 1 3 5 5 O 1.42897 * 109.47223 * 295.00013 * 4 2 1 6 6 C 1.53002 * 109.47115 * 239.99475 * 2 1 3 7 7 C 1.53043 * 109.44839 * 180.02562 * 6 2 1 8 8 C 1.53192 * 109.30860 * 178.62233 * 7 6 2 9 9 N 1.46926 * 108.77820 * 54.63429 * 8 7 6 10 10 C 1.34779 * 120.63044 * 126.36870 * 9 8 7 11 11 O 1.21283 * 119.99742 * 0.02562 * 10 9 8 12 12 C 1.50696 * 120.00186 * 180.02562 * 10 9 8 13 13 C 1.52997 * 109.47364 * 179.97438 * 12 10 9 14 14 C 1.50696 * 109.47142 * 180.02562 * 13 12 10 15 15 H 1.08002 * 120.00275 * 359.97438 * 14 13 12 16 16 C 1.37880 * 120.00300 * 180.02562 * 14 13 12 17 17 N 1.31510 * 120.00219 * 179.97438 * 16 14 13 18 18 Si 1.86800 * 119.99530 * 359.97438 * 16 14 13 19 19 H 1.48503 * 109.47167 * 90.00332 * 18 16 14 20 20 H 1.48504 * 109.47108 * 210.00062 * 18 16 14 21 21 H 1.48504 * 109.47214 * 330.00286 * 18 16 14 22 22 C 1.46925 * 118.73914 * 306.39111 * 9 8 7 23 23 C 1.53037 * 109.45951 * 60.00074 * 6 2 1 24 24 H 1.09006 * 109.46921 * 300.00459 * 1 2 3 25 25 H 1.08993 * 109.47102 * 60.00241 * 1 2 3 26 26 H 1.08992 * 109.47500 * 180.02562 * 1 2 3 27 27 H 1.09001 * 109.46745 * 54.99745 * 4 2 1 28 28 H 1.08995 * 109.47147 * 174.99443 * 4 2 1 29 29 H 0.96701 * 114.00014 * 179.97438 * 5 4 2 30 30 H 1.09001 * 109.46110 * 300.02715 * 6 2 1 31 31 H 1.09001 * 109.50069 * 58.67352 * 7 6 2 32 32 H 1.09000 * 109.49902 * 298.57033 * 7 6 2 33 33 H 1.09006 * 109.58809 * 294.84764 * 8 7 6 34 34 H 1.09002 * 109.58657 * 174.42750 * 8 7 6 35 35 H 1.08995 * 109.47063 * 300.00414 * 12 10 9 36 36 H 1.09006 * 109.47000 * 59.99630 * 12 10 9 37 37 H 1.08998 * 109.47021 * 299.99913 * 13 12 10 38 38 H 1.08997 * 109.47209 * 59.99747 * 13 12 10 39 39 H 0.97001 * 119.99771 * 180.02562 * 17 16 14 40 40 H 1.08998 * 109.58340 * 173.39503 * 22 9 8 41 41 H 1.09003 * 109.58494 * 293.68068 * 22 9 8 42 42 H 1.08997 * 109.49928 * 61.42238 * 23 6 2 43 43 H 1.08998 * 109.49765 * 301.32566 * 23 6 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0400 -0.7211 1.2493 5 8 1.6620 0.0169 2.4131 6 6 2.0400 -0.7214 -1.2492 7 6 3.5704 -0.7216 -1.2483 8 6 4.0775 -1.4744 -2.4824 9 7 3.4748 -0.8768 -3.6817 10 6 4.2483 -0.4571 -4.7026 11 8 5.4539 -0.5715 -4.6367 12 6 3.6152 0.1544 -5.9257 13 6 4.7067 0.5427 -6.9250 14 6 4.0736 1.1547 -8.1479 15 1 3.0000 1.2561 -8.2068 16 6 4.8648 1.5842 -9.1922 17 7 4.3123 2.1178 -10.2596 18 14 6.7217 1.4080 -9.0908 19 1 7.1257 0.0938 -9.6520 20 1 7.3655 2.4973 -9.8682 21 1 7.1502 1.4929 -7.6714 22 6 2.0129 -0.7450 -3.7469 23 6 1.5297 0.0002 -2.4986 24 1 -0.3633 0.5139 0.8900 25 1 -0.3633 0.5138 -0.8899 26 1 -0.3634 -1.0276 0.0005 27 1 1.6054 -1.7197 1.2953 28 1 3.1263 -0.7994 1.2056 29 1 1.9526 -0.3831 3.2441 30 1 1.6761 -1.7489 -1.2492 31 1 3.9337 -1.2147 -0.3467 32 1 3.9344 0.3055 -1.2737 33 1 3.7909 -2.5239 -2.4137 34 1 5.1630 -1.3930 -2.5396 35 1 2.9413 -0.5683 -6.3858 36 1 3.0533 1.0431 -5.6383 37 1 5.3802 1.2656 -6.4647 38 1 5.2689 -0.3458 -7.2125 39 1 4.8689 2.4196 -10.9945 40 1 1.7362 -0.1822 -4.6384 41 1 1.5581 -1.7349 -3.7837 42 1 1.9135 1.0202 -2.5119 43 1 0.4400 0.0210 -2.4871 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000593829646.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:48:14 Heat of formation + Delta-G solvation = -112.668832 kcal Electronic energy + Delta-G solvation = -21086.060392 eV Core-core repulsion = 17937.159546 eV Total energy + Delta-G solvation = -3148.900845 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 269.178 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -40.16128 -38.50623 -36.84901 -34.58472 -33.55018 -31.88571 -30.86424 -30.67577 -27.05344 -26.17150 -24.82027 -23.03705 -21.78705 -20.65825 -20.08648 -18.64041 -17.77192 -17.15847 -16.18915 -15.78980 -15.46026 -15.07679 -14.82518 -14.46424 -14.09631 -14.01935 -13.75108 -13.43458 -13.12232 -12.84635 -12.55192 -12.41215 -12.29485 -12.05221 -11.82520 -11.41666 -11.39704 -11.24542 -10.95576 -10.82610 -10.55585 -10.49163 -10.16377 -10.08078 -10.01325 -9.76846 -9.20810 -9.11212 -8.51098 -8.45384 -6.02001 -4.00556 3.10798 3.23731 3.38902 3.45383 3.56723 3.82835 4.40447 4.48220 4.52153 4.67133 4.71123 4.94886 4.99619 5.05742 5.16122 5.20694 5.26436 5.28944 5.33618 5.42356 5.49705 5.58122 5.63821 5.69455 5.74774 5.84946 5.89706 5.93194 5.95477 6.06198 6.09953 6.12586 6.25025 6.65312 6.76011 7.27505 7.38161 7.45191 7.66521 7.80975 8.50703 8.64908 9.00997 9.61269 11.10849 Molecular weight = 269.18amu Principal moments of inertia in cm(-1) A = 0.037297 B = 0.003504 C = 0.003346 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 750.545752 B = 7989.116081 C = 8365.203019 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.087 4.087 3 H 0.077 0.923 4 C 0.076 3.924 5 O -0.574 6.574 6 C -0.080 4.080 7 C -0.133 4.133 8 C 0.111 3.889 9 N -0.623 5.623 10 C 0.513 3.487 11 O -0.542 6.542 12 C -0.121 4.121 13 C 0.001 3.999 14 C -0.524 4.524 15 H 0.072 0.928 16 C 0.069 3.931 17 N -0.904 5.904 18 Si 0.877 3.123 19 H -0.277 1.277 20 H -0.288 1.288 21 H -0.261 1.261 22 C 0.108 3.892 23 C -0.131 4.131 24 H 0.059 0.941 25 H 0.059 0.941 26 H 0.051 0.949 27 H 0.044 0.956 28 H 0.049 0.951 29 H 0.377 0.623 30 H 0.073 0.927 31 H 0.072 0.928 32 H 0.068 0.932 33 H 0.060 0.940 34 H 0.090 0.910 35 H 0.085 0.915 36 H 0.085 0.915 37 H 0.023 0.977 38 H 0.018 0.982 39 H 0.263 0.737 40 H 0.094 0.906 41 H 0.065 0.935 42 H 0.070 0.930 43 H 0.079 0.921 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.867 -7.956 23.893 26.383 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.105 4.105 3 H 0.096 0.904 4 C -0.001 4.001 5 O -0.379 6.379 6 C -0.098 4.098 7 C -0.171 4.171 8 C -0.012 4.012 9 N -0.358 5.358 10 C 0.303 3.697 11 O -0.418 6.418 12 C -0.161 4.161 13 C -0.036 4.036 14 C -0.562 4.562 15 H 0.090 0.910 16 C -0.132 4.132 17 N -0.543 5.543 18 Si 0.704 3.296 19 H -0.202 1.202 20 H -0.214 1.214 21 H -0.185 1.185 22 C -0.016 4.016 23 C -0.169 4.169 24 H 0.078 0.922 25 H 0.078 0.922 26 H 0.070 0.930 27 H 0.062 0.938 28 H 0.067 0.933 29 H 0.224 0.776 30 H 0.091 0.909 31 H 0.090 0.910 32 H 0.087 0.913 33 H 0.078 0.922 34 H 0.109 0.891 35 H 0.103 0.897 36 H 0.103 0.897 37 H 0.041 0.959 38 H 0.037 0.963 39 H 0.073 0.927 40 H 0.112 0.888 41 H 0.083 0.917 42 H 0.089 0.911 43 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges -7.427 -7.541 23.275 25.569 hybrid contribution 1.101 -0.489 0.395 1.268 sum -6.325 -8.031 23.670 25.783 Atomic orbital electron populations 1.21822 0.94585 1.01700 1.02145 1.21148 0.96581 1.00402 0.92378 0.90419 1.22354 0.98249 0.94029 0.85485 1.86477 1.81602 1.53427 1.16411 1.21130 0.95242 0.99671 0.93778 1.22074 0.95323 1.01813 0.97870 1.21477 0.99898 0.95897 0.83951 1.48261 1.06866 1.62789 1.17930 1.21549 0.87161 0.76659 0.84312 1.90634 1.14881 1.55686 1.80627 1.21681 1.01236 1.00518 0.92620 1.19373 0.93736 0.96913 0.93619 1.21113 0.95346 1.39977 0.99768 0.90951 1.24970 0.98743 0.94445 0.95085 1.69912 1.35732 1.41764 1.06882 0.86798 0.85995 0.77813 0.78963 1.20245 1.21449 1.18536 1.21728 0.80028 1.00636 0.99174 1.22031 1.01115 1.00052 0.93733 0.92168 0.92175 0.92982 0.93811 0.93268 0.77636 0.90877 0.90973 0.91287 0.92154 0.89149 0.89704 0.89662 0.95875 0.96316 0.92730 0.88803 0.91656 0.91122 0.90278 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.13 8.74 37.16 0.32 -0.81 16 2 C -0.09 -0.71 2.21 -90.62 -0.20 -0.91 16 3 H 0.08 0.75 8.14 -51.93 -0.42 0.32 16 4 C 0.08 0.56 6.21 37.16 0.23 0.79 16 5 O -0.57 -4.60 13.19 -35.23 -0.46 -5.06 16 6 C -0.08 -0.66 1.74 -90.58 -0.16 -0.81 16 7 C -0.13 -1.25 5.05 -26.61 -0.13 -1.39 16 8 C 0.11 1.33 6.43 -3.71 -0.02 1.31 16 9 N -0.62 -8.81 2.97 -172.76 -0.51 -9.33 16 10 C 0.51 9.67 7.70 -10.99 -0.08 9.58 16 11 O -0.54 -12.29 15.40 5.56 0.09 -12.20 16 12 C -0.12 -2.39 3.99 -27.89 -0.11 -2.50 16 13 C 0.00 0.04 3.33 -27.89 -0.09 -0.06 16 14 C -0.52 -15.11 9.66 -34.44 -0.33 -15.44 16 15 H 0.07 2.17 7.99 -52.49 -0.42 1.75 16 16 C 0.07 2.05 5.47 -17.82 -0.10 1.96 16 17 N -0.90 -28.17 13.96 55.43 0.77 -27.40 16 18 Si 0.88 22.80 27.47 -169.99 -4.67 18.13 16 19 H -0.28 -7.08 7.11 56.52 0.40 -6.67 16 20 H -0.29 -7.33 7.11 56.52 0.40 -6.93 16 21 H -0.26 -6.77 6.54 56.52 0.37 -6.40 16 22 C 0.11 1.16 6.34 -3.71 -0.02 1.14 16 23 C -0.13 -1.19 5.04 -26.61 -0.13 -1.32 16 24 H 0.06 0.52 7.82 -51.93 -0.41 0.11 16 25 H 0.06 0.44 6.40 -51.93 -0.33 0.11 16 26 H 0.05 0.37 8.14 -51.93 -0.42 -0.05 16 27 H 0.04 0.28 8.14 -51.93 -0.42 -0.14 16 28 H 0.05 0.33 6.14 -51.93 -0.32 0.01 16 29 H 0.38 1.36 9.12 45.56 0.42 1.77 16 30 H 0.07 0.56 8.14 -51.93 -0.42 0.14 16 31 H 0.07 0.56 6.25 -51.93 -0.32 0.23 16 32 H 0.07 0.76 8.14 -51.93 -0.42 0.33 16 33 H 0.06 0.63 8.14 -51.93 -0.42 0.21 16 34 H 0.09 1.27 7.01 -51.93 -0.36 0.91 16 35 H 0.08 1.55 7.94 -51.93 -0.41 1.14 16 36 H 0.09 1.56 7.69 -51.93 -0.40 1.17 16 37 H 0.02 0.61 7.16 -51.93 -0.37 0.24 16 38 H 0.02 0.49 7.53 -51.93 -0.39 0.10 16 39 H 0.26 7.69 8.31 -40.82 -0.34 7.35 16 40 H 0.09 1.05 5.93 -51.93 -0.31 0.74 16 41 H 0.07 0.61 8.14 -51.93 -0.42 0.19 16 42 H 0.07 0.73 8.14 -51.93 -0.42 0.31 16 43 H 0.08 0.60 6.36 -51.93 -0.33 0.27 16 LS Contribution 332.44 15.07 5.01 5.01 Total: -1.00 -35.00 332.44 -7.13 -42.13 By element: Atomic # 1 Polarization: 3.70 SS G_CDS: -6.51 Total: -2.81 kcal Atomic # 6 Polarization: -7.63 SS G_CDS: -0.84 Total: -8.47 kcal Atomic # 7 Polarization: -36.99 SS G_CDS: 0.26 Total: -36.73 kcal Atomic # 8 Polarization: -16.88 SS G_CDS: -0.38 Total: -17.26 kcal Atomic # 14 Polarization: 22.80 SS G_CDS: -4.67 Total: 18.13 kcal Total LS contribution 5.01 Total: 5.01 kcal Total: -35.00 -7.13 -42.13 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000593829646.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -70.543 kcal (2) G-P(sol) polarization free energy of solvation -34.999 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -105.542 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.127 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.125 kcal (6) G-S(sol) free energy of system = (1) + (5) -112.669 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds