Wall clock time and date at job start Mon Mar 30 2020 00:48:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09003 * 109.47685 * 2 1 4 4 C 1.53005 * 109.47319 * 119.99440 * 2 1 3 5 5 O 1.42897 * 109.47223 * 295.00013 * 4 2 1 6 6 C 1.53002 * 109.47115 * 239.99475 * 2 1 3 7 7 C 1.53043 * 109.44839 * 180.02562 * 6 2 1 8 8 C 1.53192 * 109.30860 * 178.62233 * 7 6 2 9 9 N 1.46926 * 108.77820 * 54.63429 * 8 7 6 10 10 C 1.34779 * 120.63044 * 126.36870 * 9 8 7 11 11 O 1.21283 * 119.99742 * 0.02562 * 10 9 8 12 12 C 1.50696 * 120.00186 * 180.02562 * 10 9 8 13 13 C 1.52997 * 109.47364 * 179.97438 * 12 10 9 14 14 C 1.50696 * 109.47142 * 180.02562 * 13 12 10 15 15 H 1.08002 * 120.00275 * 359.97438 * 14 13 12 16 16 C 1.37880 * 120.00300 * 180.02562 * 14 13 12 17 17 N 1.31510 * 120.00219 * 179.97438 * 16 14 13 18 18 Si 1.86800 * 119.99530 * 359.97438 * 16 14 13 19 19 H 1.48503 * 109.47167 * 90.00332 * 18 16 14 20 20 H 1.48504 * 109.47108 * 210.00062 * 18 16 14 21 21 H 1.48504 * 109.47214 * 330.00286 * 18 16 14 22 22 C 1.46925 * 118.73914 * 306.39111 * 9 8 7 23 23 C 1.53037 * 109.45951 * 60.00074 * 6 2 1 24 24 H 1.09006 * 109.46921 * 300.00459 * 1 2 3 25 25 H 1.08993 * 109.47102 * 60.00241 * 1 2 3 26 26 H 1.08992 * 109.47500 * 180.02562 * 1 2 3 27 27 H 1.09001 * 109.46745 * 54.99745 * 4 2 1 28 28 H 1.08995 * 109.47147 * 174.99443 * 4 2 1 29 29 H 0.96701 * 114.00014 * 179.97438 * 5 4 2 30 30 H 1.09001 * 109.46110 * 300.02715 * 6 2 1 31 31 H 1.09001 * 109.50069 * 58.67352 * 7 6 2 32 32 H 1.09000 * 109.49902 * 298.57033 * 7 6 2 33 33 H 1.09006 * 109.58809 * 294.84764 * 8 7 6 34 34 H 1.09002 * 109.58657 * 174.42750 * 8 7 6 35 35 H 1.08995 * 109.47063 * 300.00414 * 12 10 9 36 36 H 1.09006 * 109.47000 * 59.99630 * 12 10 9 37 37 H 1.08998 * 109.47021 * 299.99913 * 13 12 10 38 38 H 1.08997 * 109.47209 * 59.99747 * 13 12 10 39 39 H 0.97001 * 119.99771 * 180.02562 * 17 16 14 40 40 H 1.08998 * 109.58340 * 173.39503 * 22 9 8 41 41 H 1.09003 * 109.58494 * 293.68068 * 22 9 8 42 42 H 1.08997 * 109.49928 * 61.42238 * 23 6 2 43 43 H 1.08998 * 109.49765 * 301.32566 * 23 6 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0400 -0.7211 1.2493 5 8 1.6620 0.0169 2.4131 6 6 2.0400 -0.7214 -1.2492 7 6 3.5704 -0.7216 -1.2483 8 6 4.0775 -1.4744 -2.4824 9 7 3.4748 -0.8768 -3.6817 10 6 4.2483 -0.4571 -4.7026 11 8 5.4539 -0.5715 -4.6367 12 6 3.6152 0.1544 -5.9257 13 6 4.7067 0.5427 -6.9250 14 6 4.0736 1.1547 -8.1479 15 1 3.0000 1.2561 -8.2068 16 6 4.8648 1.5842 -9.1922 17 7 4.3123 2.1178 -10.2596 18 14 6.7217 1.4080 -9.0908 19 1 7.1257 0.0938 -9.6520 20 1 7.3655 2.4973 -9.8682 21 1 7.1502 1.4929 -7.6714 22 6 2.0129 -0.7450 -3.7469 23 6 1.5297 0.0002 -2.4986 24 1 -0.3633 0.5139 0.8900 25 1 -0.3633 0.5138 -0.8899 26 1 -0.3634 -1.0276 0.0005 27 1 1.6054 -1.7197 1.2953 28 1 3.1263 -0.7994 1.2056 29 1 1.9526 -0.3831 3.2441 30 1 1.6761 -1.7489 -1.2492 31 1 3.9337 -1.2147 -0.3467 32 1 3.9344 0.3055 -1.2737 33 1 3.7909 -2.5239 -2.4137 34 1 5.1630 -1.3930 -2.5396 35 1 2.9413 -0.5683 -6.3858 36 1 3.0533 1.0431 -5.6383 37 1 5.3802 1.2656 -6.4647 38 1 5.2689 -0.3458 -7.2125 39 1 4.8689 2.4196 -10.9945 40 1 1.7362 -0.1822 -4.6384 41 1 1.5581 -1.7349 -3.7837 42 1 1.9135 1.0202 -2.5119 43 1 0.4400 0.0210 -2.4871 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000593829646.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:48:14 Heat of formation + Delta-G solvation = -137.664413 kcal Electronic energy + Delta-G solvation = -21087.144282 eV Core-core repulsion = 17937.159546 eV Total energy + Delta-G solvation = -3149.984735 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 269.178 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -41.29602 -39.48658 -37.66343 -35.60209 -35.49088 -33.52566 -32.16364 -31.56378 -28.37532 -27.26414 -25.86551 -24.04307 -23.15456 -21.92751 -20.83346 -19.92279 -19.15447 -18.32478 -17.71170 -16.80736 -16.70937 -16.25864 -16.05051 -15.47976 -15.25421 -14.92131 -14.83897 -14.78090 -14.53799 -14.16577 -13.86118 -13.39740 -13.38082 -13.23260 -12.91980 -12.83786 -12.47237 -12.28548 -12.07496 -11.99250 -11.89656 -11.78633 -11.52758 -11.41205 -11.33116 -11.12735 -10.79012 -10.77649 -10.60082 -9.60989 -8.32492 -6.35261 1.32044 1.33926 1.49333 1.65495 2.07360 2.34193 3.03083 3.30324 3.64903 3.72129 3.85103 4.04254 4.13117 4.17141 4.29478 4.34026 4.42896 4.43395 4.47942 4.52232 4.56839 4.71027 4.81731 4.85143 4.86668 4.96307 4.99393 5.01768 5.10931 5.12048 5.21465 5.27707 5.31645 5.42024 5.47811 5.56084 5.59572 5.67569 6.22423 6.40728 6.70720 6.94386 7.23172 7.30167 8.83159 Molecular weight = 269.18amu Principal moments of inertia in cm(-1) A = 0.037297 B = 0.003504 C = 0.003346 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 750.545752 B = 7989.116081 C = 8365.203019 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.085 4.085 3 H 0.057 0.943 4 C 0.075 3.925 5 O -0.595 6.595 6 C -0.071 4.071 7 C -0.125 4.125 8 C 0.106 3.894 9 N -0.612 5.612 10 C 0.511 3.489 11 O -0.590 6.590 12 C -0.114 4.114 13 C 0.006 3.994 14 C -0.528 4.528 15 H 0.051 0.949 16 C 0.015 3.985 17 N -0.943 5.943 18 Si 0.937 3.063 19 H -0.268 1.268 20 H -0.277 1.277 21 H -0.264 1.264 22 C 0.099 3.901 23 C -0.128 4.128 24 H 0.048 0.952 25 H 0.062 0.938 26 H 0.063 0.937 27 H 0.059 0.941 28 H 0.054 0.946 29 H 0.395 0.605 30 H 0.092 0.908 31 H 0.095 0.905 32 H 0.048 0.952 33 H 0.086 0.914 34 H 0.065 0.935 35 H 0.101 0.899 36 H 0.098 0.902 37 H 0.007 0.993 38 H 0.008 0.992 39 H 0.268 0.732 40 H 0.089 0.911 41 H 0.092 0.908 42 H 0.053 0.947 43 H 0.101 0.899 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.612 -9.409 25.697 28.688 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.104 4.104 3 H 0.076 0.924 4 C -0.002 4.002 5 O -0.404 6.404 6 C -0.090 4.090 7 C -0.163 4.163 8 C -0.016 4.016 9 N -0.345 5.345 10 C 0.301 3.699 11 O -0.471 6.471 12 C -0.153 4.153 13 C -0.032 4.032 14 C -0.566 4.566 15 H 0.069 0.931 16 C -0.183 4.183 17 N -0.583 5.583 18 Si 0.762 3.238 19 H -0.193 1.193 20 H -0.202 1.202 21 H -0.188 1.188 22 C -0.022 4.022 23 C -0.166 4.166 24 H 0.067 0.933 25 H 0.081 0.919 26 H 0.082 0.918 27 H 0.077 0.923 28 H 0.072 0.928 29 H 0.244 0.756 30 H 0.111 0.889 31 H 0.113 0.887 32 H 0.067 0.933 33 H 0.104 0.896 34 H 0.084 0.916 35 H 0.120 0.880 36 H 0.116 0.884 37 H 0.025 0.975 38 H 0.026 0.974 39 H 0.077 0.923 40 H 0.108 0.892 41 H 0.110 0.890 42 H 0.072 0.928 43 H 0.119 0.881 Dipole moment (debyes) X Y Z Total from point charges -8.220 -9.011 25.126 27.930 hybrid contribution 1.218 -0.039 -0.101 1.223 sum -7.001 -9.050 25.026 27.517 Atomic orbital electron populations 1.21792 0.94134 1.02314 1.01717 1.21095 0.96901 0.99417 0.92950 0.92441 1.22374 0.98576 0.94365 0.84878 1.86431 1.81964 1.54366 1.17594 1.21075 0.94030 1.00566 0.93324 1.22024 0.96340 1.00472 0.97450 1.21679 0.98573 0.97516 0.83798 1.48273 1.08141 1.60898 1.17194 1.21242 0.86673 0.76910 0.85055 1.90613 1.16723 1.58058 1.81686 1.21493 0.99715 1.01752 0.92360 1.19214 0.94830 0.95632 0.93495 1.21413 0.94610 1.39577 1.01032 0.93051 1.25787 1.03282 0.94364 0.94894 1.70017 1.37501 1.43034 1.07765 0.85843 0.80736 0.78426 0.78794 1.19266 1.20229 1.18832 1.22039 0.77780 1.02408 1.00003 1.22018 1.02362 0.98927 0.93247 0.93320 0.91927 0.91783 0.92280 0.92824 0.75580 0.88935 0.88669 0.93304 0.89607 0.91643 0.88048 0.88377 0.97480 0.97403 0.92337 0.89249 0.88988 0.92793 0.88106 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.86 8.74 71.98 0.63 -1.23 16 2 C -0.08 -1.19 2.21 -10.79 -0.02 -1.22 16 3 H 0.06 1.04 8.14 -2.39 -0.02 1.02 16 4 C 0.08 0.89 6.21 71.98 0.45 1.34 16 5 O -0.60 -8.35 13.19 -148.98 -1.97 -10.32 16 6 C -0.07 -0.96 1.74 -10.77 -0.02 -0.98 16 7 C -0.12 -2.09 5.05 30.67 0.15 -1.94 16 8 C 0.11 2.36 6.43 86.36 0.56 2.91 16 9 N -0.61 -16.35 2.97 -818.89 -2.43 -18.79 16 10 C 0.51 19.08 7.70 87.66 0.67 19.76 16 11 O -0.59 -27.10 15.40 -3.04 -0.05 -27.14 16 12 C -0.11 -4.45 3.99 29.85 0.12 -4.33 16 13 C 0.01 0.32 3.33 29.85 0.10 0.42 16 14 C -0.53 -30.88 9.66 25.60 0.25 -30.63 16 15 H 0.05 3.14 7.99 -2.91 -0.02 3.12 16 16 C 0.01 0.87 5.47 84.66 0.46 1.33 16 17 N -0.94 -59.40 13.96 21.45 0.30 -59.11 16 18 Si 0.94 47.41 27.47 68.60 1.88 49.30 16 19 H -0.27 -13.06 7.11 99.48 0.71 -12.35 16 20 H -0.28 -13.39 7.11 99.48 0.71 -12.68 16 21 H -0.26 -13.38 6.54 99.48 0.65 -12.73 16 22 C 0.10 1.89 6.34 86.36 0.55 2.44 16 23 C -0.13 -1.99 5.04 30.67 0.15 -1.83 16 24 H 0.05 0.75 7.82 -2.38 -0.02 0.74 16 25 H 0.06 0.76 6.40 -2.39 -0.02 0.75 16 26 H 0.06 0.69 8.14 -2.39 -0.02 0.67 16 27 H 0.06 0.53 8.14 -2.39 -0.02 0.51 16 28 H 0.05 0.57 6.14 -2.39 -0.01 0.56 16 29 H 0.39 2.02 9.12 -74.06 -0.68 1.35 16 30 H 0.09 0.98 8.14 -2.39 -0.02 0.96 16 31 H 0.10 1.18 6.25 -2.39 -0.01 1.17 16 32 H 0.05 1.03 8.14 -2.39 -0.02 1.01 16 33 H 0.09 1.51 8.14 -2.38 -0.02 1.49 16 34 H 0.06 1.82 7.01 -2.39 -0.02 1.80 16 35 H 0.10 3.60 7.94 -2.39 -0.02 3.58 16 36 H 0.10 3.55 7.69 -2.38 -0.02 3.53 16 37 H 0.01 0.37 7.16 -2.39 -0.02 0.35 16 38 H 0.01 0.40 7.53 -2.39 -0.02 0.38 16 39 H 0.27 15.75 8.31 -92.71 -0.77 14.98 16 40 H 0.09 1.80 5.93 -2.39 -0.01 1.79 16 41 H 0.09 1.34 8.14 -2.39 -0.02 1.32 16 42 H 0.05 1.04 8.14 -2.39 -0.02 1.02 16 43 H 0.10 1.18 6.36 -2.39 -0.02 1.17 16 Total: -1.00 -76.55 332.44 2.05 -74.50 By element: Atomic # 1 Polarization: 5.25 SS G_CDS: 0.26 Total: 5.51 kcal Atomic # 6 Polarization: -18.01 SS G_CDS: 4.05 Total: -13.96 kcal Atomic # 7 Polarization: -75.76 SS G_CDS: -2.13 Total: -77.89 kcal Atomic # 8 Polarization: -35.45 SS G_CDS: -2.01 Total: -37.46 kcal Atomic # 14 Polarization: 47.41 SS G_CDS: 1.88 Total: 49.30 kcal Total: -76.55 2.05 -74.50 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000593829646.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -63.160 kcal (2) G-P(sol) polarization free energy of solvation -76.550 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -139.710 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.046 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.504 kcal (6) G-S(sol) free energy of system = (1) + (5) -137.664 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds