Wall clock time and date at job start Mon Mar 30 2020 00:47:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 H 1.08998 * 109.47886 * 2 1 4 4 O 1.42908 * 109.47141 * 120.00229 * 2 1 3 5 5 C 1.53002 * 109.47074 * 239.99768 * 2 1 3 6 6 N 1.46510 * 109.47223 * 180.02562 * 5 2 1 7 7 C 1.34768 * 119.99998 * 89.99764 * 6 5 2 8 8 O 1.21282 * 120.00119 * 5.12676 * 7 6 5 9 9 C 1.50707 * 120.00074 * 185.11960 * 7 6 5 10 10 C 1.52998 * 109.47125 * 175.01056 * 9 7 6 11 11 C 1.52998 * 109.46754 * 180.02562 * 10 9 7 12 12 C 1.53008 * 109.46750 * 179.97438 * 11 10 9 13 13 C 1.50699 * 109.46818 * 180.02562 * 12 11 10 14 14 H 1.07998 * 120.00044 * 0.02562 * 13 12 11 15 15 C 1.37882 * 119.99910 * 179.97438 * 13 12 11 16 16 N 1.31510 * 119.99965 * 179.97438 * 15 13 12 17 17 Si 1.86798 * 119.99745 * 0.02562 * 15 13 12 18 18 H 1.48491 * 109.47519 * 89.99567 * 17 15 13 19 19 H 1.48508 * 109.46871 * 209.99880 * 17 15 13 20 20 H 1.48503 * 109.47207 * 329.99014 * 17 15 13 21 21 C 1.46494 * 119.99553 * 270.00345 * 6 5 2 22 22 C 1.53001 * 117.50319 * 13.58946 * 21 6 5 23 23 C 1.52998 * 117.50054 * 304.92631 * 21 6 5 24 24 H 1.08999 * 109.47565 * 179.97438 * 1 2 3 25 25 H 1.09001 * 109.47023 * 300.00239 * 1 2 3 26 26 H 1.09002 * 109.47060 * 59.99787 * 1 2 3 27 27 H 0.96702 * 113.99824 * 59.99322 * 4 2 1 28 28 H 1.09005 * 109.47296 * 60.00434 * 5 2 1 29 29 H 1.08998 * 109.47376 * 299.99947 * 5 2 1 30 30 H 1.08995 * 109.46469 * 55.01314 * 9 7 6 31 31 H 1.08997 * 109.46694 * 295.01185 * 9 7 6 32 32 H 1.09007 * 109.47253 * 300.00223 * 10 9 7 33 33 H 1.08998 * 109.47165 * 59.99964 * 10 9 7 34 34 H 1.08994 * 109.47491 * 299.99782 * 11 10 9 35 35 H 1.09003 * 109.47052 * 60.00315 * 11 10 9 36 36 H 1.09003 * 109.46766 * 300.00112 * 12 11 10 37 37 H 1.08998 * 109.47164 * 59.99858 * 12 11 10 38 38 H 0.96995 * 120.00058 * 180.02562 * 16 15 13 39 39 H 1.09004 * 115.54960 * 159.26316 * 21 6 5 40 40 H 1.08994 * 117.49772 * 359.97438 * 22 21 6 41 41 H 1.08999 * 117.50114 * 145.02589 * 22 21 6 42 42 H 1.09007 * 117.50204 * 214.98215 * 23 21 6 43 43 H 1.08999 * 117.50136 * 359.97438 * 23 21 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 8 2.0063 -0.6737 1.1668 5 6 2.0399 -0.7213 -1.2492 6 7 3.5050 -0.7219 -1.2490 7 6 4.1784 -1.7329 -0.6653 8 8 3.5752 -2.6875 -0.2227 9 6 5.6809 -1.6775 -0.5629 10 6 6.1816 -2.8765 0.2450 11 6 7.7069 -2.8199 0.3495 12 6 8.2075 -4.0186 1.1580 13 6 9.7099 -3.9625 1.2614 14 1 10.2533 -3.1526 0.7974 15 6 10.3907 -4.9444 1.9494 16 7 11.7018 -4.8957 2.0393 17 14 9.4508 -6.3447 2.7526 18 1 9.3112 -7.4648 1.7878 19 1 10.1905 -6.8136 3.9520 20 1 8.1034 -5.8688 3.1569 21 6 4.2379 0.3767 -1.8830 22 6 3.4493 1.6376 -2.2425 23 6 3.9186 0.6870 -3.3467 24 1 -0.3634 -1.0276 -0.0005 25 1 -0.3633 0.5139 0.8900 26 1 -0.3633 0.5139 -0.8900 27 1 1.7209 -1.5953 1.2329 28 1 1.6767 -0.2075 -2.1393 29 1 1.6766 -1.7490 -1.2492 30 1 5.9772 -0.7545 -0.0647 31 1 6.1145 -1.7063 -1.5625 32 1 5.7479 -2.8477 1.2447 33 1 5.8851 -3.7996 -0.2532 34 1 8.1409 -2.8485 -0.6499 35 1 8.0029 -1.8968 0.8480 36 1 7.7735 -3.9895 2.1574 37 1 7.9115 -4.9419 0.6600 38 1 12.1808 -5.5867 2.5230 39 1 5.2695 0.5048 -1.5549 40 1 2.3850 1.6495 -2.0076 41 1 3.9621 2.5951 -2.1513 42 1 4.7400 1.0197 -3.9816 43 1 3.1635 0.0735 -3.8382 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000594414493.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:47:44 Heat of formation + Delta-G solvation = -82.252061 kcal Electronic energy + Delta-G solvation = -20863.070986 eV Core-core repulsion = 17715.489111 eV Total energy + Delta-G solvation = -3147.581875 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 269.178 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -40.42350 -37.90036 -37.24757 -35.00060 -33.40116 -32.57321 -31.54676 -30.11863 -27.35033 -25.36049 -22.97833 -22.68723 -22.32881 -21.41494 -19.99957 -19.08505 -17.52664 -16.98953 -16.55707 -16.09572 -15.63553 -15.52371 -15.05913 -14.56547 -14.21781 -14.07142 -13.78419 -13.17250 -12.66161 -12.59260 -12.38808 -12.35755 -12.12829 -11.95291 -11.81847 -11.69470 -11.67104 -11.13672 -11.07632 -10.92206 -10.67269 -10.49137 -10.43246 -9.88643 -9.75444 -9.60569 -9.36896 -9.08236 -8.59821 -8.46388 -5.97676 -3.94857 2.60987 2.70568 3.37826 3.44629 3.49957 3.51188 4.15059 4.27585 4.41751 4.48656 4.53002 4.53701 4.67158 4.76916 4.85088 5.02551 5.20751 5.27582 5.29976 5.32638 5.35745 5.38142 5.44228 5.55488 5.64288 5.68690 5.79774 5.86962 6.08880 6.18435 6.29156 6.47620 6.73876 6.87042 7.03615 7.25904 7.42457 7.51896 7.55361 7.88158 8.19449 8.61677 9.07541 9.65907 11.15936 Molecular weight = 269.18amu Principal moments of inertia in cm(-1) A = 0.027013 B = 0.003502 C = 0.003214 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1036.286537 B = 7994.104434 C = 8710.543810 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.184 4.184 2 C 0.086 3.914 3 H 0.097 0.903 4 O -0.554 6.554 5 C 0.078 3.922 6 N -0.587 5.587 7 C 0.528 3.472 8 O -0.534 6.534 9 C -0.137 4.137 10 C -0.105 4.105 11 C -0.102 4.102 12 C -0.015 4.015 13 C -0.518 4.518 14 H 0.071 0.929 15 C 0.064 3.936 16 N -0.907 5.907 17 Si 0.880 3.120 18 H -0.277 1.277 19 H -0.289 1.289 20 H -0.264 1.264 21 C 0.075 3.925 22 C -0.189 4.189 23 C -0.194 4.194 24 H 0.060 0.940 25 H 0.067 0.933 26 H 0.064 0.936 27 H 0.379 0.621 28 H 0.081 0.919 29 H 0.088 0.912 30 H 0.090 0.910 31 H 0.091 0.909 32 H 0.063 0.937 33 H 0.063 0.937 34 H 0.052 0.948 35 H 0.052 0.948 36 H 0.016 0.984 37 H 0.011 0.989 38 H 0.262 0.738 39 H 0.137 0.863 40 H 0.098 0.902 41 H 0.105 0.895 42 H 0.104 0.896 43 H 0.095 0.905 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.796 14.118 -10.237 28.701 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.243 4.243 2 C 0.026 3.974 3 H 0.115 0.885 4 O -0.360 6.360 5 C -0.045 4.045 6 N -0.319 5.319 7 C 0.319 3.681 8 O -0.410 6.410 9 C -0.177 4.177 10 C -0.143 4.143 11 C -0.140 4.140 12 C -0.053 4.053 13 C -0.556 4.556 14 H 0.089 0.911 15 C -0.136 4.136 16 N -0.546 5.546 17 Si 0.707 3.293 18 H -0.203 1.203 19 H -0.215 1.215 20 H -0.189 1.189 21 C -0.030 4.030 22 C -0.227 4.227 23 C -0.232 4.232 24 H 0.080 0.920 25 H 0.086 0.914 26 H 0.083 0.917 27 H 0.227 0.773 28 H 0.099 0.901 29 H 0.106 0.894 30 H 0.109 0.891 31 H 0.109 0.891 32 H 0.082 0.918 33 H 0.082 0.918 34 H 0.071 0.929 35 H 0.071 0.929 36 H 0.034 0.966 37 H 0.029 0.971 38 H 0.072 0.928 39 H 0.154 0.846 40 H 0.116 0.884 41 H 0.123 0.877 42 H 0.123 0.877 43 H 0.114 0.886 Dipole moment (debyes) X Y Z Total from point charges -22.690 14.049 -9.791 28.426 hybrid contribution -0.686 -1.105 0.136 1.308 sum -23.376 12.945 -9.655 28.412 Atomic orbital electron populations 1.22466 0.96124 1.02838 1.02830 1.22330 0.92705 0.97021 0.85384 0.88475 1.86584 1.77234 1.29450 1.42714 1.22206 0.80853 1.02811 0.98647 1.47351 1.05375 1.22352 1.56802 1.20915 0.90728 0.80776 0.75724 1.90639 1.70602 1.32575 1.47176 1.21797 0.90461 1.02364 1.03065 1.21482 0.97226 0.95964 0.99663 1.21473 0.91832 1.00233 1.00447 1.19576 0.96900 0.93587 0.95200 1.21195 0.90091 1.10547 1.33815 0.91118 1.25043 0.94729 0.97944 0.95917 1.69919 1.06754 1.34877 1.43078 0.86772 0.80621 0.82727 0.79173 1.20334 1.21473 1.18879 1.21805 0.97166 0.89043 0.95034 1.23405 1.01043 0.94831 1.03439 1.23442 1.04336 1.03169 0.92302 0.92049 0.91436 0.91655 0.77265 0.90062 0.89363 0.89142 0.89057 0.91845 0.91806 0.92922 0.92878 0.96618 0.97080 0.92842 0.84555 0.88416 0.87674 0.87716 0.88642 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -1.19 9.53 37.15 0.35 -0.84 16 2 C 0.09 0.75 3.68 -26.73 -0.10 0.65 16 3 H 0.10 0.84 7.20 -51.93 -0.37 0.46 16 4 O -0.55 -6.70 12.26 -36.96 -0.45 -7.16 16 5 C 0.08 0.69 4.42 -4.04 -0.02 0.67 16 6 N -0.59 -6.22 2.78 -166.10 -0.46 -6.68 16 7 C 0.53 7.38 7.09 -10.99 -0.08 7.30 16 8 O -0.53 -9.06 14.69 3.83 0.06 -9.01 16 9 C -0.14 -1.85 4.19 -27.88 -0.12 -1.97 16 10 C -0.11 -1.83 4.52 -26.73 -0.12 -1.95 16 11 C -0.10 -2.06 5.15 -26.73 -0.14 -2.20 16 12 C -0.02 -0.38 4.04 -27.88 -0.11 -0.49 16 13 C -0.52 -15.27 9.66 -34.44 -0.33 -15.61 16 14 H 0.07 2.21 7.99 -52.49 -0.42 1.79 16 15 C 0.06 1.94 5.47 -17.82 -0.10 1.84 16 16 N -0.91 -28.69 13.96 55.43 0.77 -27.92 16 17 Si 0.88 22.61 27.47 -169.99 -4.67 17.94 16 18 H -0.28 -6.99 7.11 56.52 0.40 -6.59 16 19 H -0.29 -7.30 7.11 56.52 0.40 -6.90 16 20 H -0.26 -6.60 6.54 56.52 0.37 -6.24 16 21 C 0.07 0.61 6.15 -67.93 -0.42 0.19 16 22 C -0.19 -1.15 9.51 -26.69 -0.25 -1.40 16 23 C -0.19 -1.25 10.02 -26.69 -0.27 -1.52 16 24 H 0.06 0.39 8.14 -51.93 -0.42 -0.03 16 25 H 0.07 0.45 8.14 -51.93 -0.42 0.03 16 26 H 0.06 0.32 8.14 -51.93 -0.42 -0.11 16 27 H 0.38 4.18 8.62 45.56 0.39 4.57 16 28 H 0.08 0.54 6.25 -51.93 -0.32 0.21 16 29 H 0.09 0.90 7.36 -51.93 -0.38 0.51 16 30 H 0.09 1.10 7.54 -51.93 -0.39 0.71 16 31 H 0.09 1.09 8.14 -51.93 -0.42 0.66 16 32 H 0.06 1.17 8.14 -51.93 -0.42 0.75 16 33 H 0.06 1.16 8.05 -51.93 -0.42 0.74 16 34 H 0.05 1.03 8.14 -51.93 -0.42 0.61 16 35 H 0.05 1.05 8.14 -51.93 -0.42 0.63 16 36 H 0.02 0.39 7.20 -51.93 -0.37 0.02 16 37 H 0.01 0.27 7.57 -51.93 -0.39 -0.12 16 38 H 0.26 7.75 8.31 -40.82 -0.34 7.41 16 39 H 0.14 1.05 6.59 -51.93 -0.34 0.71 16 40 H 0.10 0.55 5.84 -51.93 -0.30 0.24 16 41 H 0.10 0.53 8.14 -51.93 -0.42 0.11 16 42 H 0.10 0.58 8.14 -51.93 -0.42 0.16 16 43 H 0.10 0.64 7.83 -51.93 -0.41 0.23 16 LS Contribution 344.98 15.07 5.20 5.20 Total: -1.00 -34.42 344.98 -7.96 -42.38 By element: Atomic # 1 Polarization: 7.27 SS G_CDS: -6.71 Total: 0.57 kcal Atomic # 6 Polarization: -13.63 SS G_CDS: -1.70 Total: -15.33 kcal Atomic # 7 Polarization: -34.91 SS G_CDS: 0.31 Total: -34.60 kcal Atomic # 8 Polarization: -15.77 SS G_CDS: -0.40 Total: -16.17 kcal Atomic # 14 Polarization: 22.61 SS G_CDS: -4.67 Total: 17.94 kcal Total LS contribution 5.20 Total: 5.20 kcal Total: -34.42 -7.96 -42.38 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000594414493.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -39.869 kcal (2) G-P(sol) polarization free energy of solvation -34.423 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -74.292 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.960 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.383 kcal (6) G-S(sol) free energy of system = (1) + (5) -82.252 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds