Wall clock time and date at job start Mon Mar 30 2020 00:47:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 H 1.08998 * 109.47886 * 2 1 4 4 O 1.42908 * 109.47141 * 120.00229 * 2 1 3 5 5 C 1.53002 * 109.47074 * 239.99768 * 2 1 3 6 6 N 1.46510 * 109.47223 * 180.02562 * 5 2 1 7 7 C 1.34768 * 119.99998 * 89.99764 * 6 5 2 8 8 O 1.21282 * 120.00119 * 5.12676 * 7 6 5 9 9 C 1.50707 * 120.00074 * 185.11960 * 7 6 5 10 10 C 1.52998 * 109.47125 * 175.01056 * 9 7 6 11 11 C 1.52998 * 109.46754 * 180.02562 * 10 9 7 12 12 C 1.53008 * 109.46750 * 179.97438 * 11 10 9 13 13 C 1.50699 * 109.46818 * 180.02562 * 12 11 10 14 14 H 1.07998 * 120.00044 * 0.02562 * 13 12 11 15 15 C 1.37882 * 119.99910 * 179.97438 * 13 12 11 16 16 N 1.31510 * 119.99965 * 179.97438 * 15 13 12 17 17 Si 1.86798 * 119.99745 * 0.02562 * 15 13 12 18 18 H 1.48491 * 109.47519 * 89.99567 * 17 15 13 19 19 H 1.48508 * 109.46871 * 209.99880 * 17 15 13 20 20 H 1.48503 * 109.47207 * 329.99014 * 17 15 13 21 21 C 1.46494 * 119.99553 * 270.00345 * 6 5 2 22 22 C 1.53001 * 117.50319 * 13.58946 * 21 6 5 23 23 C 1.52998 * 117.50054 * 304.92631 * 21 6 5 24 24 H 1.08999 * 109.47565 * 179.97438 * 1 2 3 25 25 H 1.09001 * 109.47023 * 300.00239 * 1 2 3 26 26 H 1.09002 * 109.47060 * 59.99787 * 1 2 3 27 27 H 0.96702 * 113.99824 * 59.99322 * 4 2 1 28 28 H 1.09005 * 109.47296 * 60.00434 * 5 2 1 29 29 H 1.08998 * 109.47376 * 299.99947 * 5 2 1 30 30 H 1.08995 * 109.46469 * 55.01314 * 9 7 6 31 31 H 1.08997 * 109.46694 * 295.01185 * 9 7 6 32 32 H 1.09007 * 109.47253 * 300.00223 * 10 9 7 33 33 H 1.08998 * 109.47165 * 59.99964 * 10 9 7 34 34 H 1.08994 * 109.47491 * 299.99782 * 11 10 9 35 35 H 1.09003 * 109.47052 * 60.00315 * 11 10 9 36 36 H 1.09003 * 109.46766 * 300.00112 * 12 11 10 37 37 H 1.08998 * 109.47164 * 59.99858 * 12 11 10 38 38 H 0.96995 * 120.00058 * 180.02562 * 16 15 13 39 39 H 1.09004 * 115.54960 * 159.26316 * 21 6 5 40 40 H 1.08994 * 117.49772 * 359.97438 * 22 21 6 41 41 H 1.08999 * 117.50114 * 145.02589 * 22 21 6 42 42 H 1.09007 * 117.50204 * 214.98215 * 23 21 6 43 43 H 1.08999 * 117.50136 * 359.97438 * 23 21 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 8 2.0063 -0.6737 1.1668 5 6 2.0399 -0.7213 -1.2492 6 7 3.5050 -0.7219 -1.2490 7 6 4.1784 -1.7329 -0.6653 8 8 3.5752 -2.6875 -0.2227 9 6 5.6809 -1.6775 -0.5629 10 6 6.1816 -2.8765 0.2450 11 6 7.7069 -2.8199 0.3495 12 6 8.2075 -4.0186 1.1580 13 6 9.7099 -3.9625 1.2614 14 1 10.2533 -3.1526 0.7974 15 6 10.3907 -4.9444 1.9494 16 7 11.7018 -4.8957 2.0393 17 14 9.4508 -6.3447 2.7526 18 1 9.3112 -7.4648 1.7878 19 1 10.1905 -6.8136 3.9520 20 1 8.1034 -5.8688 3.1569 21 6 4.2379 0.3767 -1.8830 22 6 3.4493 1.6376 -2.2425 23 6 3.9186 0.6870 -3.3467 24 1 -0.3634 -1.0276 -0.0005 25 1 -0.3633 0.5139 0.8900 26 1 -0.3633 0.5139 -0.8900 27 1 1.7209 -1.5953 1.2329 28 1 1.6767 -0.2075 -2.1393 29 1 1.6766 -1.7490 -1.2492 30 1 5.9772 -0.7545 -0.0647 31 1 6.1145 -1.7063 -1.5625 32 1 5.7479 -2.8477 1.2447 33 1 5.8851 -3.7996 -0.2532 34 1 8.1409 -2.8485 -0.6499 35 1 8.0029 -1.8968 0.8480 36 1 7.7735 -3.9895 2.1574 37 1 7.9115 -4.9419 0.6600 38 1 12.1808 -5.5867 2.5230 39 1 5.2695 0.5048 -1.5549 40 1 2.3850 1.6495 -2.0076 41 1 3.9621 2.5951 -2.1513 42 1 4.7400 1.0197 -3.9816 43 1 3.1635 0.0735 -3.8382 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000594414493.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:47:43 Heat of formation + Delta-G solvation = -105.544589 kcal Electronic energy + Delta-G solvation = -20864.081026 eV Core-core repulsion = 17715.489111 eV Total energy + Delta-G solvation = -3148.591915 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 269.178 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -41.30152 -38.79323 -37.94384 -36.65996 -34.60692 -34.18354 -32.49260 -31.63137 -28.50134 -26.74547 -23.94877 -23.51794 -23.09165 -22.48999 -21.72620 -19.91626 -18.86124 -18.40755 -17.77295 -17.07812 -16.54329 -16.34252 -16.30012 -15.94170 -15.44021 -15.05080 -14.90181 -14.71321 -13.91802 -13.82192 -13.71581 -13.44152 -13.08132 -13.00663 -12.86177 -12.69309 -12.45409 -12.34847 -12.28463 -12.08812 -11.80795 -11.75123 -11.56881 -11.37895 -11.34541 -11.25517 -11.17101 -10.76024 -10.67125 -9.37041 -8.29721 -6.32775 1.34840 1.36432 1.49541 1.61668 1.90908 2.36220 2.95627 3.05677 3.41606 3.54973 3.78870 3.81424 3.98182 4.02696 4.09252 4.10270 4.16557 4.24219 4.38445 4.55327 4.62187 4.65626 4.74620 4.80008 4.81980 4.82260 4.95972 5.06833 5.09169 5.14259 5.20078 5.22901 5.25092 5.27307 5.53118 5.59836 5.65356 5.68568 6.29554 6.37582 6.72468 6.75016 7.20513 7.32053 8.87019 Molecular weight = 269.18amu Principal moments of inertia in cm(-1) A = 0.027013 B = 0.003502 C = 0.003214 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1036.286537 B = 7994.104434 C = 8710.543810 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.177 4.177 2 C 0.085 3.915 3 H 0.101 0.899 4 O -0.579 6.579 5 C 0.078 3.922 6 N -0.580 5.580 7 C 0.522 3.478 8 O -0.575 6.575 9 C -0.130 4.130 10 C -0.094 4.094 11 C -0.093 4.093 12 C -0.016 4.016 13 C -0.531 4.531 14 H 0.037 0.963 15 C 0.004 3.996 16 N -0.951 5.951 17 Si 0.948 3.052 18 H -0.266 1.266 19 H -0.281 1.281 20 H -0.253 1.253 21 C 0.044 3.956 22 C -0.174 4.174 23 C -0.184 4.184 24 H 0.060 0.940 25 H 0.064 0.936 26 H 0.087 0.913 27 H 0.379 0.621 28 H 0.109 0.891 29 H 0.073 0.927 30 H 0.106 0.894 31 H 0.111 0.889 32 H 0.049 0.951 33 H 0.053 0.947 34 H 0.057 0.943 35 H 0.054 0.946 36 H 0.013 0.987 37 H 0.013 0.987 38 H 0.266 0.734 39 H 0.140 0.860 40 H 0.105 0.895 41 H 0.118 0.882 42 H 0.116 0.884 43 H 0.095 0.905 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -24.803 15.094 -11.194 31.118 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.235 4.235 2 C 0.025 3.975 3 H 0.119 0.881 4 O -0.386 6.386 5 C -0.045 4.045 6 N -0.310 5.310 7 C 0.312 3.688 8 O -0.454 6.454 9 C -0.170 4.170 10 C -0.132 4.132 11 C -0.131 4.131 12 C -0.053 4.053 13 C -0.569 4.569 14 H 0.055 0.945 15 C -0.193 4.193 16 N -0.592 5.592 17 Si 0.771 3.229 18 H -0.191 1.191 19 H -0.206 1.206 20 H -0.177 1.177 21 C -0.060 4.060 22 C -0.212 4.212 23 C -0.223 4.223 24 H 0.079 0.921 25 H 0.083 0.917 26 H 0.106 0.894 27 H 0.228 0.772 28 H 0.127 0.873 29 H 0.091 0.909 30 H 0.124 0.876 31 H 0.129 0.871 32 H 0.068 0.932 33 H 0.072 0.928 34 H 0.075 0.925 35 H 0.073 0.927 36 H 0.031 0.969 37 H 0.032 0.968 38 H 0.075 0.925 39 H 0.157 0.843 40 H 0.123 0.877 41 H 0.137 0.863 42 H 0.134 0.866 43 H 0.113 0.887 Dipole moment (debyes) X Y Z Total from point charges -24.714 15.078 -10.783 30.893 hybrid contribution -0.016 -1.294 0.366 1.345 sum -24.729 13.785 -10.417 30.167 Atomic orbital electron populations 1.22395 0.94242 1.03126 1.03772 1.22475 0.94199 0.96636 0.84213 0.88116 1.86547 1.77967 1.29687 1.44389 1.22314 0.79837 1.02385 0.99918 1.47328 1.06164 1.21955 1.55590 1.20916 0.90827 0.81129 0.75918 1.90621 1.71221 1.34293 1.49280 1.21686 0.90712 1.01037 1.03563 1.21260 0.94857 0.97506 0.99612 1.21334 0.93796 0.98158 0.99786 1.19565 0.93935 0.95862 0.95957 1.21545 0.92455 1.09565 1.33315 0.94495 1.25994 0.95641 1.00977 0.96655 1.70057 1.08579 1.36249 1.44308 0.85689 0.79524 0.79222 0.78432 1.19118 1.20649 1.17673 1.22079 0.97691 0.89632 0.96558 1.23501 1.01291 0.94445 1.01968 1.23481 1.04567 1.02796 0.91435 0.92121 0.91713 0.89439 0.77215 0.87332 0.90888 0.87568 0.87126 0.93199 0.92818 0.92465 0.92677 0.96862 0.96841 0.92484 0.84250 0.87705 0.86327 0.86600 0.88699 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -1.95 9.53 71.98 0.69 -1.26 16 2 C 0.08 1.35 3.68 30.59 0.11 1.46 16 3 H 0.10 1.52 7.20 -2.39 -0.02 1.50 16 4 O -0.58 -13.87 12.26 -147.33 -1.81 -15.68 16 5 C 0.08 1.25 4.42 86.38 0.38 1.64 16 6 N -0.58 -11.38 2.78 -797.82 -2.21 -13.60 16 7 C 0.52 14.17 7.09 87.66 0.62 14.79 16 8 O -0.57 -19.62 14.69 -1.38 -0.02 -19.64 16 9 C -0.13 -3.36 4.19 29.85 0.12 -3.23 16 10 C -0.09 -3.23 4.52 30.59 0.14 -3.09 16 11 C -0.09 -3.72 5.15 30.60 0.16 -3.56 16 12 C -0.02 -0.78 4.04 29.85 0.12 -0.66 16 13 C -0.53 -31.80 9.66 25.60 0.25 -31.55 16 14 H 0.04 2.38 7.99 -2.91 -0.02 2.36 16 15 C 0.00 0.24 5.47 84.66 0.46 0.70 16 16 N -0.95 -61.20 13.96 21.45 0.30 -60.90 16 17 Si 0.95 46.54 27.47 68.60 1.88 48.43 16 18 H -0.27 -12.53 7.11 99.48 0.71 -11.82 16 19 H -0.28 -13.36 7.11 99.48 0.71 -12.65 16 20 H -0.25 -11.86 6.54 99.48 0.65 -11.21 16 21 C 0.04 0.62 6.15 44.99 0.28 0.89 16 22 C -0.17 -1.54 9.51 30.62 0.29 -1.25 16 23 C -0.18 -1.82 10.02 30.62 0.31 -1.52 16 24 H 0.06 0.69 8.14 -2.39 -0.02 0.67 16 25 H 0.06 0.77 8.14 -2.39 -0.02 0.75 16 26 H 0.09 0.58 8.14 -2.39 -0.02 0.56 16 27 H 0.38 8.60 8.62 -74.06 -0.64 7.96 16 28 H 0.11 1.12 6.25 -2.38 -0.01 1.11 16 29 H 0.07 1.43 7.36 -2.39 -0.02 1.42 16 30 H 0.11 2.39 7.54 -2.39 -0.02 2.37 16 31 H 0.11 2.41 8.14 -2.39 -0.02 2.39 16 32 H 0.05 1.83 8.14 -2.38 -0.02 1.81 16 33 H 0.05 1.94 8.05 -2.39 -0.02 1.92 16 34 H 0.06 2.21 8.14 -2.39 -0.02 2.19 16 35 H 0.05 2.15 8.14 -2.39 -0.02 2.13 16 36 H 0.01 0.65 7.20 -2.39 -0.02 0.64 16 37 H 0.01 0.65 7.57 -2.39 -0.02 0.64 16 38 H 0.27 15.94 8.31 -92.71 -0.77 15.17 16 39 H 0.14 1.81 6.59 -2.38 -0.02 1.80 16 40 H 0.10 0.79 5.84 -2.39 -0.01 0.78 16 41 H 0.12 0.77 8.14 -2.39 -0.02 0.75 16 42 H 0.12 0.91 8.14 -2.38 -0.02 0.89 16 43 H 0.09 0.98 7.83 -2.39 -0.02 0.96 16 Total: -1.00 -75.31 344.98 2.36 -72.95 By element: Atomic # 1 Polarization: 14.78 SS G_CDS: 0.29 Total: 15.07 kcal Atomic # 6 Polarization: -30.57 SS G_CDS: 3.93 Total: -26.64 kcal Atomic # 7 Polarization: -72.58 SS G_CDS: -1.92 Total: -74.50 kcal Atomic # 8 Polarization: -33.49 SS G_CDS: -1.83 Total: -35.31 kcal Atomic # 14 Polarization: 46.54 SS G_CDS: 1.88 Total: 48.43 kcal Total: -75.31 2.36 -72.95 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000594414493.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -32.592 kcal (2) G-P(sol) polarization free energy of solvation -75.310 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -107.903 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.358 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.952 kcal (6) G-S(sol) free energy of system = (1) + (5) -105.545 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds