Wall clock time and date at job start Mon Mar 30 2020 00:47:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 H 1.09001 * 109.46946 * 2 1 4 4 O 1.42897 * 109.47150 * 240.00121 * 2 1 3 5 5 C 1.52994 * 109.46987 * 120.00002 * 2 1 3 6 6 N 1.46503 * 109.46999 * 185.00168 * 5 2 1 7 7 C 1.34773 * 120.00449 * 90.00087 * 6 5 2 8 8 O 1.21276 * 120.00402 * 185.94723 * 7 6 5 9 9 C 1.50700 * 119.99429 * 5.67000 * 7 6 5 10 10 C 1.53002 * 109.46782 * 175.03631 * 9 7 6 11 11 C 1.53000 * 109.47017 * 179.97438 * 10 9 7 12 12 C 1.53002 * 109.47017 * 180.02562 * 11 10 9 13 13 C 1.50700 * 109.47162 * 180.02562 * 12 11 10 14 14 H 1.08006 * 120.00270 * 0.02562 * 13 12 11 15 15 C 1.37877 * 120.00502 * 179.97438 * 13 12 11 16 16 N 1.31519 * 119.99289 * 0.02562 * 15 13 12 17 17 Si 1.86793 * 120.00319 * 180.02562 * 15 13 12 18 18 H 1.48496 * 109.47383 * 90.00496 * 17 15 13 19 19 H 1.48509 * 109.47008 * 209.99968 * 17 15 13 20 20 H 1.48497 * 109.47351 * 329.99680 * 17 15 13 21 21 C 1.46503 * 119.99577 * 270.00079 * 6 5 2 22 22 C 1.53004 * 117.49519 * 196.45939 * 21 6 5 23 23 C 1.52995 * 117.49786 * 127.83997 * 21 6 5 24 24 H 1.08997 * 109.47059 * 300.00046 * 1 2 3 25 25 H 1.09000 * 109.46991 * 60.00094 * 1 2 3 26 26 H 1.08996 * 109.47070 * 179.97438 * 1 2 3 27 27 H 0.96705 * 114.00202 * 299.99993 * 4 2 1 28 28 H 1.09000 * 109.47060 * 65.00183 * 5 2 1 29 29 H 1.09001 * 109.47362 * 304.99943 * 5 2 1 30 30 H 1.08997 * 109.47428 * 295.03439 * 9 7 6 31 31 H 1.08999 * 109.47471 * 55.03920 * 9 7 6 32 32 H 1.08993 * 109.47234 * 299.99629 * 10 9 7 33 33 H 1.08996 * 109.47131 * 60.00385 * 10 9 7 34 34 H 1.08997 * 109.47362 * 299.99912 * 11 10 9 35 35 H 1.08999 * 109.47301 * 60.00248 * 11 10 9 36 36 H 1.08993 * 109.47234 * 299.99693 * 12 11 10 37 37 H 1.08996 * 109.47131 * 60.00449 * 12 11 10 38 38 H 0.97004 * 119.99699 * 180.02562 * 16 15 13 39 39 H 1.09000 * 115.55226 * 342.15797 * 21 6 5 40 40 H 1.08999 * 117.50086 * 359.97438 * 22 21 6 41 41 H 1.08995 * 117.50274 * 145.02059 * 22 21 6 42 42 H 1.09006 * 117.49748 * 214.97950 * 23 21 6 43 43 H 1.08995 * 117.50104 * 359.96524 * 23 21 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 8 2.0064 -0.6736 -1.1668 5 6 2.0400 -0.7212 1.2492 6 7 3.5001 -0.6178 1.3109 7 6 4.0758 0.4197 1.9501 8 8 5.2792 0.5645 1.9098 9 6 3.2235 1.4035 2.7095 10 6 4.1244 2.4025 3.4383 11 6 3.2591 3.4017 4.2089 12 6 4.1601 4.4012 4.9371 13 6 3.3078 5.3850 5.6967 14 1 2.2312 5.3052 5.6636 15 6 3.9023 6.3865 6.4346 16 7 5.2133 6.4834 6.4752 17 14 2.8460 7.6055 7.3766 18 1 2.5936 7.0877 8.7453 19 1 3.5520 8.9091 7.4630 20 1 1.5526 7.7889 6.6704 21 6 4.3343 -1.6423 0.6779 22 6 5.8070 -1.7066 1.0879 23 6 5.4197 -1.1697 -0.2914 24 1 -0.3633 0.5138 0.8900 25 1 -0.3633 0.5138 -0.8900 26 1 -0.3633 -1.0276 -0.0005 27 1 1.7211 -1.5952 -1.2329 28 1 1.7517 -1.7715 1.2055 29 1 1.6054 -0.2617 2.1370 30 1 2.5772 1.9378 2.0132 31 1 2.6115 0.8690 3.4361 32 1 4.7706 1.8683 4.1347 33 1 4.7364 2.9371 2.7118 34 1 2.6132 3.9360 3.5122 35 1 2.6468 2.8676 4.9354 36 1 4.8063 3.8673 5.6338 37 1 4.7720 4.9354 4.2103 38 1 5.6317 7.1878 6.9947 39 1 3.8329 -2.5834 0.4521 40 1 6.1552 -0.9865 1.8283 41 1 6.2747 -2.6902 1.1320 42 1 5.6325 -1.8001 -1.1549 43 1 5.5127 -0.0967 -0.4585 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000594414494.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:47:46 Heat of formation + Delta-G solvation = -74.802344 kcal Electronic energy + Delta-G solvation = -20908.307429 eV Core-core repulsion = 17761.048598 eV Total energy + Delta-G solvation = -3147.258831 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 269.178 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -40.53843 -37.99175 -36.55091 -34.88296 -34.24156 -32.50704 -31.23942 -29.63481 -26.55637 -25.78787 -23.40448 -22.33362 -22.16204 -21.55590 -19.97995 -19.02849 -17.46639 -16.64083 -16.34431 -16.08139 -15.66263 -15.44515 -14.74227 -14.58309 -14.36821 -13.96773 -13.58288 -13.27067 -12.77854 -12.60067 -12.44067 -12.33040 -12.15992 -11.70729 -11.64939 -11.55599 -11.21761 -11.03756 -10.96306 -10.59284 -10.50584 -10.49032 -10.40146 -10.32943 -9.60794 -9.45775 -9.16521 -8.96579 -8.41171 -8.29743 -5.94486 -3.97061 2.59988 2.77192 3.34349 3.40427 3.43505 3.89973 4.01491 4.37562 4.47878 4.50980 4.65783 4.75056 4.85116 4.95161 5.06367 5.07621 5.17169 5.27792 5.33477 5.38641 5.41035 5.48469 5.67726 5.74248 5.75104 5.85047 6.04215 6.13280 6.29289 6.34825 6.54947 6.68248 6.84050 7.01414 7.19278 7.25921 7.36456 7.74791 7.90880 8.06902 8.23985 8.48536 9.10616 9.66543 11.16860 Molecular weight = 269.18amu Principal moments of inertia in cm(-1) A = 0.024221 B = 0.003492 C = 0.003134 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1155.752683 B = 8016.543584 C = 8931.116878 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.185 4.185 2 C 0.083 3.917 3 H 0.101 0.899 4 O -0.552 6.552 5 C 0.080 3.920 6 N -0.587 5.587 7 C 0.513 3.487 8 O -0.523 6.523 9 C -0.139 4.139 10 C -0.103 4.103 11 C -0.110 4.110 12 C 0.020 3.980 13 C -0.520 4.520 14 H 0.054 0.946 15 C 0.055 3.945 16 N -0.895 5.895 17 Si 0.891 3.109 18 H -0.281 1.281 19 H -0.287 1.287 20 H -0.274 1.274 21 C 0.078 3.922 22 C -0.198 4.198 23 C -0.177 4.177 24 H 0.071 0.929 25 H 0.067 0.933 26 H 0.059 0.941 27 H 0.369 0.631 28 H 0.081 0.919 29 H 0.094 0.906 30 H 0.089 0.911 31 H 0.088 0.912 32 H 0.062 0.938 33 H 0.065 0.935 34 H 0.046 0.954 35 H 0.046 0.954 36 H 0.016 0.984 37 H 0.016 0.984 38 H 0.260 0.740 39 H 0.120 0.880 40 H 0.136 0.864 41 H 0.086 0.914 42 H 0.090 0.910 43 H 0.095 0.905 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.763 -19.692 -13.908 25.652 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.243 4.243 2 C 0.022 3.978 3 H 0.119 0.881 4 O -0.357 6.357 5 C -0.044 4.044 6 N -0.318 5.318 7 C 0.303 3.697 8 O -0.400 6.400 9 C -0.179 4.179 10 C -0.141 4.141 11 C -0.147 4.147 12 C -0.017 4.017 13 C -0.559 4.559 14 H 0.072 0.928 15 C -0.146 4.146 16 N -0.534 5.534 17 Si 0.719 3.281 18 H -0.207 1.207 19 H -0.212 1.212 20 H -0.199 1.199 21 C -0.027 4.027 22 C -0.235 4.235 23 C -0.216 4.216 24 H 0.090 0.910 25 H 0.086 0.914 26 H 0.078 0.922 27 H 0.215 0.785 28 H 0.099 0.901 29 H 0.112 0.888 30 H 0.107 0.893 31 H 0.107 0.893 32 H 0.081 0.919 33 H 0.083 0.917 34 H 0.065 0.935 35 H 0.065 0.935 36 H 0.034 0.966 37 H 0.034 0.966 38 H 0.070 0.930 39 H 0.138 0.862 40 H 0.154 0.846 41 H 0.104 0.896 42 H 0.109 0.891 43 H 0.114 0.886 Dipole moment (debyes) X Y Z Total from point charges -7.708 -18.912 -13.947 24.731 hybrid contribution -0.969 0.109 0.631 1.161 sum -8.677 -18.803 -13.316 24.621 Atomic orbital electron populations 1.22465 0.95652 1.02678 1.03505 1.22445 0.93027 0.97457 0.84834 0.88083 1.86683 1.77059 1.28500 1.43423 1.22394 0.80307 1.02028 0.99653 1.47300 1.05715 1.24211 1.54611 1.21119 0.89035 0.81089 0.78426 1.90551 1.15101 1.72799 1.61505 1.21880 0.99459 0.96884 0.99677 1.21458 0.97618 0.95962 0.99070 1.21646 0.98433 0.96665 0.97996 1.19094 0.94657 0.92998 0.94987 1.21280 0.93035 1.12533 1.29020 0.92780 1.25042 0.94903 0.97806 0.96813 1.69980 1.08673 1.33384 1.41406 0.86612 0.80453 0.80734 0.80288 1.20720 1.21249 1.19924 1.21514 0.87486 0.91918 1.01761 1.23854 0.95885 1.03207 1.00541 1.23125 1.03151 1.02141 0.93182 0.91002 0.91374 0.92191 0.78476 0.90051 0.88764 0.89289 0.89329 0.91886 0.91659 0.93502 0.93531 0.96607 0.96565 0.93046 0.86215 0.84613 0.89611 0.89137 0.88613 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -1.02 9.53 37.16 0.35 -0.67 16 2 C 0.08 0.62 3.83 -26.73 -0.10 0.52 16 3 H 0.10 0.97 7.81 -51.93 -0.41 0.56 16 4 O -0.55 -4.65 12.90 -35.23 -0.45 -5.10 16 5 C 0.08 0.58 5.00 -4.04 -0.02 0.56 16 6 N -0.59 -6.43 2.80 -166.11 -0.47 -6.90 16 7 C 0.51 7.34 7.46 -10.99 -0.08 7.25 16 8 O -0.52 -9.30 11.73 5.56 0.07 -9.24 16 9 C -0.14 -1.87 4.25 -27.88 -0.12 -1.99 16 10 C -0.10 -1.85 4.52 -26.73 -0.12 -1.97 16 11 C -0.11 -2.26 5.15 -26.73 -0.14 -2.40 16 12 C 0.02 0.53 4.97 -27.88 -0.14 0.39 16 13 C -0.52 -15.04 9.11 -34.44 -0.31 -15.35 16 14 H 0.05 1.50 7.74 -52.48 -0.41 1.09 16 15 C 0.06 1.62 5.46 -17.82 -0.10 1.52 16 16 N -0.90 -27.62 13.29 55.43 0.74 -26.88 16 17 Si 0.89 21.93 29.54 -169.99 -5.02 16.91 16 18 H -0.28 -6.80 7.11 56.52 0.40 -6.39 16 19 H -0.29 -6.99 7.11 56.52 0.40 -6.59 16 20 H -0.27 -6.57 7.11 56.52 0.40 -6.17 16 21 C 0.08 0.81 6.22 -67.93 -0.42 0.39 16 22 C -0.20 -2.39 9.63 -26.73 -0.26 -2.65 16 23 C -0.18 -2.09 9.87 -26.73 -0.26 -2.35 16 24 H 0.07 0.37 8.14 -51.93 -0.42 -0.05 16 25 H 0.07 0.42 8.14 -51.93 -0.42 0.00 16 26 H 0.06 0.24 8.14 -51.93 -0.42 -0.18 16 27 H 0.37 1.66 9.05 45.56 0.41 2.07 16 28 H 0.08 0.41 8.03 -51.93 -0.42 -0.01 16 29 H 0.09 0.62 6.31 -51.93 -0.33 0.29 16 30 H 0.09 1.05 7.81 -51.93 -0.41 0.64 16 31 H 0.09 1.01 7.34 -51.93 -0.38 0.63 16 32 H 0.06 1.20 8.14 -51.93 -0.42 0.78 16 33 H 0.06 1.27 8.04 -51.93 -0.42 0.85 16 34 H 0.05 0.93 8.14 -51.93 -0.42 0.50 16 35 H 0.05 0.91 8.14 -51.93 -0.42 0.49 16 36 H 0.02 0.44 8.14 -51.93 -0.42 0.02 16 37 H 0.02 0.46 8.14 -51.93 -0.42 0.03 16 38 H 0.26 7.54 8.31 -40.82 -0.34 7.20 16 39 H 0.12 0.91 8.09 -51.93 -0.42 0.49 16 40 H 0.14 2.10 5.22 -52.10 -0.27 1.83 16 41 H 0.09 0.86 8.14 -51.93 -0.42 0.44 16 42 H 0.09 0.88 8.14 -51.93 -0.42 0.46 16 43 H 0.10 1.40 7.59 -51.93 -0.39 1.00 16 LS Contribution 349.35 15.07 5.26 5.26 Total: -1.00 -34.29 349.35 -8.39 -42.68 By element: Atomic # 1 Polarization: 6.80 SS G_CDS: -6.80 Total: 0.00 kcal Atomic # 6 Polarization: -15.02 SS G_CDS: -1.72 Total: -16.74 kcal Atomic # 7 Polarization: -34.05 SS G_CDS: 0.27 Total: -33.78 kcal Atomic # 8 Polarization: -13.95 SS G_CDS: -0.39 Total: -14.34 kcal Atomic # 14 Polarization: 21.93 SS G_CDS: -5.02 Total: 16.91 kcal Total LS contribution 5.26 Total: 5.26 kcal Total: -34.29 -8.39 -42.68 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000594414494.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -32.118 kcal (2) G-P(sol) polarization free energy of solvation -34.291 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -66.409 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.394 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.685 kcal (6) G-S(sol) free energy of system = (1) + (5) -74.802 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds