Wall clock time and date at job start Mon Mar 30 2020 00:47:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 H 1.09001 * 109.46946 * 2 1 4 4 O 1.42897 * 109.47150 * 240.00121 * 2 1 3 5 5 C 1.52994 * 109.46987 * 120.00002 * 2 1 3 6 6 N 1.46503 * 109.46999 * 185.00168 * 5 2 1 7 7 C 1.34773 * 120.00449 * 90.00087 * 6 5 2 8 8 O 1.21276 * 120.00402 * 185.94723 * 7 6 5 9 9 C 1.50700 * 119.99429 * 5.67000 * 7 6 5 10 10 C 1.53002 * 109.46782 * 175.03631 * 9 7 6 11 11 C 1.53000 * 109.47017 * 179.97438 * 10 9 7 12 12 C 1.53002 * 109.47017 * 180.02562 * 11 10 9 13 13 C 1.50700 * 109.47162 * 180.02562 * 12 11 10 14 14 H 1.08006 * 120.00270 * 0.02562 * 13 12 11 15 15 C 1.37877 * 120.00502 * 179.97438 * 13 12 11 16 16 N 1.31519 * 119.99289 * 0.02562 * 15 13 12 17 17 Si 1.86793 * 120.00319 * 180.02562 * 15 13 12 18 18 H 1.48496 * 109.47383 * 90.00496 * 17 15 13 19 19 H 1.48509 * 109.47008 * 209.99968 * 17 15 13 20 20 H 1.48497 * 109.47351 * 329.99680 * 17 15 13 21 21 C 1.46503 * 119.99577 * 270.00079 * 6 5 2 22 22 C 1.53004 * 117.49519 * 196.45939 * 21 6 5 23 23 C 1.52995 * 117.49786 * 127.83997 * 21 6 5 24 24 H 1.08997 * 109.47059 * 300.00046 * 1 2 3 25 25 H 1.09000 * 109.46991 * 60.00094 * 1 2 3 26 26 H 1.08996 * 109.47070 * 179.97438 * 1 2 3 27 27 H 0.96705 * 114.00202 * 299.99993 * 4 2 1 28 28 H 1.09000 * 109.47060 * 65.00183 * 5 2 1 29 29 H 1.09001 * 109.47362 * 304.99943 * 5 2 1 30 30 H 1.08997 * 109.47428 * 295.03439 * 9 7 6 31 31 H 1.08999 * 109.47471 * 55.03920 * 9 7 6 32 32 H 1.08993 * 109.47234 * 299.99629 * 10 9 7 33 33 H 1.08996 * 109.47131 * 60.00385 * 10 9 7 34 34 H 1.08997 * 109.47362 * 299.99912 * 11 10 9 35 35 H 1.08999 * 109.47301 * 60.00248 * 11 10 9 36 36 H 1.08993 * 109.47234 * 299.99693 * 12 11 10 37 37 H 1.08996 * 109.47131 * 60.00449 * 12 11 10 38 38 H 0.97004 * 119.99699 * 180.02562 * 16 15 13 39 39 H 1.09000 * 115.55226 * 342.15797 * 21 6 5 40 40 H 1.08999 * 117.50086 * 359.97438 * 22 21 6 41 41 H 1.08995 * 117.50274 * 145.02059 * 22 21 6 42 42 H 1.09006 * 117.49748 * 214.97950 * 23 21 6 43 43 H 1.08995 * 117.50104 * 359.96524 * 23 21 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 8 2.0064 -0.6736 -1.1668 5 6 2.0400 -0.7212 1.2492 6 7 3.5001 -0.6178 1.3109 7 6 4.0758 0.4197 1.9501 8 8 5.2792 0.5645 1.9098 9 6 3.2235 1.4035 2.7095 10 6 4.1244 2.4025 3.4383 11 6 3.2591 3.4017 4.2089 12 6 4.1601 4.4012 4.9371 13 6 3.3078 5.3850 5.6967 14 1 2.2312 5.3052 5.6636 15 6 3.9023 6.3865 6.4346 16 7 5.2133 6.4834 6.4752 17 14 2.8460 7.6055 7.3766 18 1 2.5936 7.0877 8.7453 19 1 3.5520 8.9091 7.4630 20 1 1.5526 7.7889 6.6704 21 6 4.3343 -1.6423 0.6779 22 6 5.8070 -1.7066 1.0879 23 6 5.4197 -1.1697 -0.2914 24 1 -0.3633 0.5138 0.8900 25 1 -0.3633 0.5138 -0.8900 26 1 -0.3633 -1.0276 -0.0005 27 1 1.7211 -1.5952 -1.2329 28 1 1.7517 -1.7715 1.2055 29 1 1.6054 -0.2617 2.1370 30 1 2.5772 1.9378 2.0132 31 1 2.6115 0.8690 3.4361 32 1 4.7706 1.8683 4.1347 33 1 4.7364 2.9371 2.7118 34 1 2.6132 3.9360 3.5122 35 1 2.6468 2.8676 4.9354 36 1 4.8063 3.8673 5.6338 37 1 4.7720 4.9354 4.2103 38 1 5.6317 7.1878 6.9947 39 1 3.8329 -2.5834 0.4521 40 1 6.1552 -0.9865 1.8283 41 1 6.2747 -2.6902 1.1320 42 1 5.6325 -1.8001 -1.1549 43 1 5.5127 -0.0967 -0.4585 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000594414494.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:47:45 Heat of formation + Delta-G solvation = -98.228372 kcal Electronic energy + Delta-G solvation = -20909.323258 eV Core-core repulsion = 17761.048598 eV Total energy + Delta-G solvation = -3148.274660 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 269.178 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -41.52231 -38.67959 -37.58375 -36.48290 -35.24991 -34.43281 -31.84044 -31.34330 -27.70859 -27.02880 -24.88937 -23.26729 -23.05207 -22.67736 -21.66975 -20.03526 -18.43068 -18.31613 -17.37370 -17.16868 -16.60079 -16.50915 -16.20278 -15.79055 -15.52384 -14.89454 -14.75888 -14.50851 -14.08008 -13.83570 -13.61147 -13.31975 -13.26344 -12.90319 -12.83369 -12.73368 -12.49084 -12.33824 -12.28431 -12.12645 -12.00991 -11.66959 -11.40087 -11.34016 -11.27586 -11.09781 -11.07877 -10.55348 -10.39348 -9.30858 -8.18850 -6.31277 1.40359 1.42826 1.53845 1.53882 1.90912 2.41930 3.01903 3.13948 3.49565 3.55129 3.87641 3.96244 4.03389 4.04899 4.09151 4.15134 4.20471 4.29490 4.49913 4.54765 4.64897 4.71281 4.74155 4.82276 4.84963 4.87404 4.95205 5.09501 5.16051 5.19116 5.31405 5.34754 5.35342 5.40622 5.55591 5.76731 5.78538 5.87223 6.24594 6.36238 6.87171 6.97069 7.20475 7.38502 8.93524 Molecular weight = 269.18amu Principal moments of inertia in cm(-1) A = 0.024221 B = 0.003492 C = 0.003134 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1155.752683 B = 8016.543584 C = 8931.116878 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.177 4.177 2 C 0.086 3.914 3 H 0.073 0.927 4 O -0.574 6.574 5 C 0.074 3.926 6 N -0.581 5.581 7 C 0.504 3.496 8 O -0.571 6.571 9 C -0.128 4.128 10 C -0.094 4.094 11 C -0.094 4.094 12 C 0.018 3.982 13 C -0.542 4.542 14 H 0.067 0.933 15 C -0.007 4.007 16 N -0.939 5.939 17 Si 0.970 3.030 18 H -0.271 1.271 19 H -0.284 1.284 20 H -0.258 1.258 21 C 0.091 3.909 22 C -0.212 4.212 23 C -0.184 4.184 24 H 0.077 0.923 25 H 0.057 0.943 26 H 0.081 0.919 27 H 0.387 0.613 28 H 0.117 0.883 29 H 0.107 0.893 30 H 0.110 0.890 31 H 0.120 0.880 32 H 0.043 0.957 33 H 0.039 0.961 34 H 0.059 0.941 35 H 0.063 0.937 36 H -0.015 1.015 37 H -0.018 1.018 38 H 0.263 0.737 39 H 0.164 0.836 40 H 0.098 0.902 41 H 0.108 0.892 42 H 0.114 0.886 43 H 0.058 0.942 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.216 -21.425 -14.073 28.395 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.235 4.235 2 C 0.025 3.975 3 H 0.091 0.909 4 O -0.381 6.381 5 C -0.048 4.048 6 N -0.310 5.310 7 C 0.294 3.706 8 O -0.451 6.451 9 C -0.168 4.168 10 C -0.132 4.132 11 C -0.132 4.132 12 C -0.019 4.019 13 C -0.579 4.579 14 H 0.085 0.915 15 C -0.204 4.204 16 N -0.579 5.579 17 Si 0.794 3.206 18 H -0.196 1.196 19 H -0.210 1.210 20 H -0.182 1.182 21 C -0.013 4.013 22 C -0.249 4.249 23 C -0.222 4.222 24 H 0.096 0.904 25 H 0.076 0.924 26 H 0.100 0.900 27 H 0.236 0.764 28 H 0.135 0.865 29 H 0.126 0.874 30 H 0.129 0.871 31 H 0.138 0.862 32 H 0.062 0.938 33 H 0.058 0.942 34 H 0.078 0.922 35 H 0.082 0.918 36 H 0.003 0.997 37 H 0.001 0.999 38 H 0.071 0.929 39 H 0.181 0.819 40 H 0.116 0.884 41 H 0.126 0.874 42 H 0.132 0.868 43 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges -11.215 -20.685 -14.133 27.448 hybrid contribution 0.160 0.621 0.634 0.902 sum -11.055 -20.063 -13.499 26.589 Atomic orbital electron populations 1.22390 0.93780 1.04049 1.03322 1.22336 0.94299 0.96095 0.84734 0.90897 1.86650 1.77569 1.30105 1.43824 1.22733 0.77574 1.04451 1.00009 1.47381 1.07554 1.23013 1.53083 1.21280 0.88471 0.81991 0.78813 1.90572 1.17074 1.74101 1.63333 1.21751 0.98617 0.96054 1.00351 1.21231 0.97595 0.96223 0.98186 1.21439 0.97653 0.95874 0.98218 1.19055 0.94883 0.93881 0.94048 1.21753 0.93868 1.13078 1.29244 0.91472 1.26106 0.96283 1.00124 0.97905 1.70143 1.10925 1.34395 1.42442 0.85371 0.78789 0.77553 0.78865 1.19620 1.21017 1.18240 1.21883 0.86914 0.92846 0.99630 1.23726 0.98090 1.03323 0.99786 1.23049 1.04851 1.00307 0.94008 0.90377 0.92386 0.90036 0.76399 0.86518 0.87448 0.87147 0.86226 0.93795 0.94236 0.92203 0.91791 0.99694 0.99921 0.92866 0.81921 0.88360 0.87355 0.86803 0.92371 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -1.38 9.53 71.98 0.69 -0.69 16 2 C 0.09 1.07 3.83 30.59 0.12 1.18 16 3 H 0.07 1.32 7.81 -2.39 -0.02 1.30 16 4 O -0.57 -8.21 12.90 -148.98 -1.92 -10.13 16 5 C 0.07 0.80 5.00 86.38 0.43 1.23 16 6 N -0.58 -11.58 2.80 -797.84 -2.24 -13.82 16 7 C 0.50 14.37 7.46 87.66 0.65 15.02 16 8 O -0.57 -21.54 11.73 -3.02 -0.04 -21.57 16 9 C -0.13 -3.29 4.25 29.85 0.13 -3.17 16 10 C -0.09 -3.49 4.52 30.60 0.14 -3.35 16 11 C -0.09 -3.89 5.15 30.60 0.16 -3.73 16 12 C 0.02 1.03 4.97 29.85 0.15 1.17 16 13 C -0.54 -31.57 9.11 25.60 0.23 -31.34 16 14 H 0.07 3.65 7.74 -2.91 -0.02 3.63 16 15 C -0.01 -0.42 5.46 84.65 0.46 0.04 16 16 N -0.94 -59.56 13.29 21.45 0.28 -59.27 16 17 Si 0.97 44.92 29.54 68.60 2.03 46.94 16 18 H -0.27 -12.03 7.11 99.48 0.71 -11.33 16 19 H -0.28 -12.97 7.11 99.48 0.71 -12.27 16 20 H -0.26 -11.22 7.11 99.48 0.71 -10.51 16 21 C 0.09 1.71 6.22 44.99 0.28 1.99 16 22 C -0.21 -5.10 9.63 30.59 0.29 -4.81 16 23 C -0.18 -4.27 9.87 30.59 0.30 -3.97 16 24 H 0.08 0.53 8.14 -2.39 -0.02 0.51 16 25 H 0.06 0.59 8.14 -2.39 -0.02 0.57 16 26 H 0.08 0.30 8.14 -2.39 -0.02 0.28 16 27 H 0.39 2.05 9.05 -74.05 -0.67 1.38 16 28 H 0.12 0.51 8.03 -2.39 -0.02 0.49 16 29 H 0.11 0.92 6.31 -2.39 -0.02 0.91 16 30 H 0.11 2.39 7.81 -2.39 -0.02 2.37 16 31 H 0.12 2.35 7.34 -2.39 -0.02 2.33 16 32 H 0.04 1.76 8.14 -2.39 -0.02 1.74 16 33 H 0.04 1.63 8.04 -2.39 -0.02 1.61 16 34 H 0.06 2.31 8.14 -2.39 -0.02 2.29 16 35 H 0.06 2.42 8.14 -2.39 -0.02 2.40 16 36 H -0.02 -0.93 8.14 -2.39 -0.02 -0.95 16 37 H -0.02 -1.08 8.14 -2.39 -0.02 -1.10 16 38 H 0.26 15.60 8.31 -92.71 -0.77 14.83 16 39 H 0.16 1.68 8.09 -2.39 -0.02 1.67 16 40 H 0.10 3.24 5.22 -5.14 -0.03 3.21 16 41 H 0.11 2.05 8.14 -2.39 -0.02 2.03 16 42 H 0.11 2.06 8.14 -2.38 -0.02 2.04 16 43 H 0.06 1.80 7.59 -2.39 -0.02 1.78 16 Total: -1.00 -79.52 349.35 2.44 -77.08 By element: Atomic # 1 Polarization: 10.90 SS G_CDS: 0.29 Total: 11.19 kcal Atomic # 6 Polarization: -34.44 SS G_CDS: 4.03 Total: -30.41 kcal Atomic # 7 Polarization: -71.14 SS G_CDS: -1.95 Total: -73.09 kcal Atomic # 8 Polarization: -29.75 SS G_CDS: -1.96 Total: -31.71 kcal Atomic # 14 Polarization: 44.92 SS G_CDS: 2.03 Total: 46.94 kcal Total: -79.52 2.44 -77.08 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000594414494.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -21.151 kcal (2) G-P(sol) polarization free energy of solvation -79.519 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -100.670 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.442 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.077 kcal (6) G-S(sol) free energy of system = (1) + (5) -98.228 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds