Wall clock time and date at job start Mon Mar 30 2020 01:31:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 O 1.45196 * 109.47169 * 2 1 4 4 C 1.34234 * 116.99998 * 180.02562 * 3 2 1 5 5 O 1.20825 * 119.99911 * 0.02562 * 4 3 2 6 6 C 1.50697 * 119.99969 * 180.02562 * 4 3 2 7 7 C 1.53002 * 109.46916 * 179.97438 * 6 4 3 8 8 C 1.52999 * 109.46816 * 180.02562 * 7 6 4 9 9 N 1.46897 * 109.47150 * 180.02562 * 8 7 6 10 10 C 1.46851 * 110.99867 * 66.04321 * 9 8 7 11 11 C 1.53036 * 109.52375 * 174.16127 * 10 9 8 12 12 C 1.53117 * 109.28041 * 59.17925 * 11 10 9 13 13 C 1.53117 * 109.16356 * 302.35058 * 12 11 10 14 14 H 1.09005 * 109.50208 * 297.71320 * 13 12 11 15 15 C 1.50693 * 109.50679 * 177.63028 * 13 12 11 16 16 H 1.08001 * 120.00399 * 275.19810 * 15 13 12 17 17 C 1.37879 * 120.00158 * 95.19634 * 15 13 12 18 18 N 1.31511 * 120.00066 * 185.51457 * 17 15 13 19 19 Si 1.86802 * 119.99815 * 5.51914 * 17 15 13 20 20 H 1.48503 * 109.47123 * 84.78199 * 19 17 15 21 21 H 1.48501 * 109.47068 * 204.77931 * 19 17 15 22 22 H 1.48495 * 109.47080 * 324.78141 * 19 17 15 23 23 C 1.46851 * 111.00057 * 301.83666 * 9 8 7 24 24 H 1.09001 * 109.47008 * 59.99681 * 1 2 3 25 25 H 1.08996 * 109.46825 * 179.97438 * 1 2 3 26 26 H 1.08994 * 109.46607 * 299.99715 * 1 2 3 27 27 H 1.09003 * 109.47146 * 120.00853 * 2 1 3 28 28 H 1.09003 * 109.46606 * 240.00006 * 2 1 3 29 29 H 1.08995 * 109.47512 * 300.00482 * 6 4 3 30 30 H 1.09005 * 109.46779 * 60.00125 * 6 4 3 31 31 H 1.08994 * 109.47443 * 300.00121 * 7 6 4 32 32 H 1.08997 * 109.46567 * 60.00776 * 7 6 4 33 33 H 1.09003 * 109.47236 * 300.00004 * 8 7 6 34 34 H 1.09000 * 109.47301 * 60.00041 * 8 7 6 35 35 H 1.08994 * 109.46195 * 294.18187 * 10 9 8 36 36 H 1.09001 * 109.45874 * 54.16112 * 10 9 8 37 37 H 1.08999 * 109.50774 * 179.12187 * 11 10 9 38 38 H 1.09006 * 109.50645 * 299.20596 * 11 10 9 39 39 H 1.09002 * 109.51759 * 62.24986 * 12 11 10 40 40 H 1.08994 * 109.52605 * 182.37390 * 12 11 10 41 41 H 0.97008 * 119.99580 * 180.02562 * 18 17 15 42 42 H 1.08997 * 109.45970 * 305.85514 * 23 9 8 43 43 H 1.09004 * 109.45991 * 65.82490 * 23 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 8 2.0141 1.3689 0.0000 4 6 3.3448 1.5448 -0.0005 5 8 4.0808 0.5866 -0.0015 6 6 3.9208 2.9373 0.0000 7 6 5.4488 2.8572 -0.0001 8 6 6.0335 4.2710 0.0011 9 7 7.5005 4.1942 0.0003 10 6 7.9963 3.6120 -1.2534 11 6 9.5249 3.6812 -1.2800 12 6 10.0867 2.9121 -0.0811 13 6 9.5171 3.5073 1.2095 14 1 9.8351 4.5457 1.3027 15 6 10.0195 2.7192 2.3916 16 1 9.5061 1.8200 2.6988 17 6 11.1347 3.1459 3.0811 18 7 11.6373 2.4031 4.0429 19 14 11.9315 4.7792 2.6489 20 1 11.2360 5.8755 3.3699 21 1 13.3616 4.7534 3.0484 22 1 11.8306 5.0073 1.1851 23 6 7.9887 3.4432 1.1640 24 1 -0.3633 0.5139 -0.8900 25 1 -0.3633 -1.0276 -0.0005 26 1 -0.3632 0.5138 0.8900 27 1 1.8934 -0.5140 0.8899 28 1 1.8933 -0.5139 -0.8900 29 1 3.5844 3.4701 -0.8894 30 1 3.5853 3.4689 0.8905 31 1 5.7848 2.3247 0.8895 32 1 5.7845 2.3255 -0.8904 33 1 5.6975 4.8040 -0.8884 34 1 5.6976 4.8024 0.8915 35 1 7.6785 2.5717 -1.3213 36 1 7.5929 4.1709 -2.0978 37 1 9.8934 3.2349 -2.2037 38 1 9.8431 4.7224 -1.2266 39 1 9.8012 1.8628 -0.1553 40 1 11.1735 2.9942 -0.0726 41 1 12.4216 2.7036 4.5282 42 1 7.5796 3.8793 2.0753 43 1 7.6711 2.4035 1.0847 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000595614371.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:31:21 Heat of formation + Delta-G solvation = -108.050598 kcal Electronic energy + Delta-G solvation = -20964.449595 eV Core-core repulsion = 17815.749011 eV Total energy + Delta-G solvation = -3148.700584 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 269.178 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -40.60408 -38.70796 -36.88523 -34.79118 -32.79254 -32.07995 -31.28481 -30.22750 -26.90133 -24.98578 -24.14112 -22.97052 -21.59502 -20.96918 -20.56948 -18.48095 -17.77932 -16.96859 -16.82016 -16.40053 -15.33406 -15.15687 -14.42695 -14.11033 -13.94904 -13.79191 -13.53820 -13.21422 -13.02038 -12.73781 -12.47809 -12.19173 -12.11208 -11.88885 -11.84880 -11.67145 -11.41485 -11.17171 -10.95693 -10.77624 -10.69753 -10.56505 -10.41905 -10.07954 -9.76840 -9.47385 -9.24697 -8.88942 -8.45142 -7.73650 -6.02912 -4.01881 2.11531 2.50320 3.35331 3.42717 3.47484 4.41070 4.48436 4.51804 4.62682 4.70331 4.87086 4.87792 4.97974 5.25246 5.27810 5.35698 5.44610 5.45561 5.51246 5.56534 5.65096 5.68539 5.82329 5.89990 5.99016 6.15283 6.23511 6.28038 6.34326 6.42203 6.48476 6.58799 6.75660 6.88570 6.97370 7.36140 7.52145 7.63378 7.64650 7.67654 7.92170 8.58637 9.02600 9.61104 11.10448 Molecular weight = 269.18amu Principal moments of inertia in cm(-1) A = 0.027304 B = 0.003712 C = 0.003482 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1025.261328 B = 7542.069076 C = 8039.213309 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C 0.060 3.940 3 O -0.363 6.363 4 C 0.458 3.542 5 O -0.503 6.503 6 C -0.107 4.107 7 C -0.152 4.152 8 C 0.057 3.943 9 N -0.539 5.539 10 C 0.059 3.941 11 C -0.121 4.121 12 C -0.113 4.113 13 C 0.020 3.980 14 H 0.038 0.962 15 C -0.511 4.511 16 H 0.070 0.930 17 C 0.071 3.929 18 N -0.903 5.903 19 Si 0.879 3.121 20 H -0.276 1.276 21 H -0.292 1.292 22 H -0.263 1.263 23 C 0.068 3.932 24 H 0.066 0.934 25 H 0.078 0.922 26 H 0.066 0.934 27 H 0.070 0.930 28 H 0.068 0.932 29 H 0.104 0.896 30 H 0.106 0.894 31 H 0.080 0.920 32 H 0.071 0.929 33 H 0.069 0.931 34 H 0.075 0.925 35 H 0.031 0.969 36 H 0.060 0.940 37 H 0.051 0.949 38 H 0.061 0.939 39 H 0.049 0.951 40 H 0.051 0.949 41 H 0.263 0.737 42 H 0.066 0.934 43 H 0.030 0.970 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.405 1.193 -10.797 22.238 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.014 4.014 3 O -0.281 6.281 4 C 0.301 3.699 5 O -0.390 6.390 6 C -0.145 4.145 7 C -0.191 4.191 8 C -0.071 4.071 9 N -0.262 5.262 10 C -0.069 4.069 11 C -0.158 4.158 12 C -0.151 4.151 13 C 0.001 3.999 14 H 0.056 0.944 15 C -0.550 4.550 16 H 0.089 0.911 17 C -0.131 4.131 18 N -0.541 5.541 19 Si 0.707 3.293 20 H -0.202 1.202 21 H -0.219 1.219 22 H -0.188 1.188 23 C -0.059 4.059 24 H 0.085 0.915 25 H 0.097 0.903 26 H 0.086 0.914 27 H 0.088 0.912 28 H 0.087 0.913 29 H 0.122 0.878 30 H 0.124 0.876 31 H 0.099 0.901 32 H 0.090 0.910 33 H 0.087 0.913 34 H 0.093 0.907 35 H 0.049 0.951 36 H 0.079 0.921 37 H 0.070 0.930 38 H 0.079 0.921 39 H 0.068 0.932 40 H 0.070 0.930 41 H 0.073 0.927 42 H 0.085 0.915 43 H 0.048 0.952 Dipole moment (debyes) X Y Z Total from point charges -18.852 1.340 -10.618 21.678 hybrid contribution 0.173 -0.310 -0.152 0.386 sum -18.679 1.030 -10.771 21.586 Atomic orbital electron populations 1.21803 0.92669 1.02942 1.03468 1.23013 0.95300 0.80419 1.02678 1.86506 1.24987 1.32300 1.84287 1.23995 0.80310 0.93310 0.72328 1.90705 1.60315 1.43295 1.44702 1.21397 0.97052 0.90384 1.05675 1.22235 0.91714 1.00682 1.04476 1.22189 0.88568 0.94130 1.02252 1.62317 1.06770 1.53585 1.03490 1.22025 0.96221 0.97009 0.91641 1.21684 0.94255 1.01148 0.98764 1.21866 0.99751 0.98658 0.94829 1.19156 0.90338 0.96840 0.93607 0.94353 1.20979 1.11890 1.10673 1.11429 0.91148 1.25058 0.96398 0.96950 0.94644 1.69924 1.23212 1.37552 1.23375 0.86819 0.78146 0.84762 0.79571 1.20204 1.21883 1.18759 1.22307 0.98233 0.94726 0.90639 0.91541 0.90282 0.91447 0.91181 0.91316 0.87824 0.87563 0.90139 0.91023 0.91290 0.90686 0.95116 0.92137 0.93006 0.92069 0.93235 0.93020 0.92738 0.91526 0.95191 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.95 10.29 37.16 0.38 -0.56 16 2 C 0.06 0.55 6.19 37.16 0.23 0.78 16 3 O -0.36 -4.04 10.22 -39.27 -0.40 -4.44 16 4 C 0.46 5.78 7.96 36.00 0.29 6.07 16 5 O -0.50 -8.19 15.73 -18.75 -0.29 -8.48 16 6 C -0.11 -1.07 5.81 -27.88 -0.16 -1.23 16 7 C -0.15 -1.99 3.81 -26.73 -0.10 -2.09 16 8 C 0.06 0.76 5.36 -3.83 -0.02 0.74 16 9 N -0.54 -9.26 4.86 -234.67 -1.14 -10.40 16 10 C 0.06 0.95 5.05 -3.83 -0.02 0.94 16 11 C -0.12 -2.13 6.09 -26.65 -0.16 -2.30 16 12 C -0.11 -2.44 5.27 -26.61 -0.14 -2.58 16 13 C 0.02 0.47 1.94 -91.69 -0.18 0.30 16 14 H 0.04 0.95 5.27 -51.93 -0.27 0.67 16 15 C -0.51 -14.46 8.86 -34.44 -0.31 -14.76 16 16 H 0.07 2.17 8.06 -52.49 -0.42 1.75 16 17 C 0.07 2.06 5.47 -17.82 -0.10 1.96 16 18 N -0.90 -27.90 13.96 55.43 0.77 -27.13 16 19 Si 0.88 21.98 27.01 -169.99 -4.59 17.39 16 20 H -0.28 -6.80 7.11 56.52 0.40 -6.40 16 21 H -0.29 -7.28 7.11 56.52 0.40 -6.88 16 22 H -0.26 -6.33 6.80 56.52 0.38 -5.94 16 23 C 0.07 1.39 4.10 -3.83 -0.02 1.38 16 24 H 0.07 0.39 8.14 -51.93 -0.42 -0.03 16 25 H 0.08 0.36 8.14 -51.93 -0.42 -0.06 16 26 H 0.07 0.41 8.14 -51.93 -0.42 -0.01 16 27 H 0.07 0.67 8.13 -51.93 -0.42 0.25 16 28 H 0.07 0.63 8.13 -51.93 -0.42 0.21 16 29 H 0.10 0.80 8.14 -51.93 -0.42 0.37 16 30 H 0.11 0.89 8.14 -51.93 -0.42 0.47 16 31 H 0.08 1.27 6.46 -51.93 -0.34 0.93 16 32 H 0.07 1.02 6.64 -51.93 -0.34 0.67 16 33 H 0.07 0.77 8.06 -51.93 -0.42 0.35 16 34 H 0.07 0.93 8.14 -51.93 -0.42 0.51 16 35 H 0.03 0.51 6.75 -51.93 -0.35 0.16 16 36 H 0.06 0.84 8.06 -51.93 -0.42 0.42 16 37 H 0.05 0.80 8.14 -51.93 -0.42 0.38 16 38 H 0.06 1.10 8.14 -51.93 -0.42 0.68 16 39 H 0.05 1.08 8.14 -51.93 -0.42 0.66 16 40 H 0.05 1.16 8.14 -51.93 -0.42 0.74 16 41 H 0.26 7.63 8.31 -40.82 -0.34 7.29 16 42 H 0.07 1.38 8.12 -51.93 -0.42 0.96 16 43 H 0.03 0.64 6.61 -51.93 -0.34 0.29 16 LS Contribution 339.00 15.07 5.11 5.11 Total: -1.00 -32.50 339.00 -8.40 -40.90 By element: Atomic # 1 Polarization: 5.99 SS G_CDS: -7.55 Total: -1.56 kcal Atomic # 6 Polarization: -11.07 SS G_CDS: -0.30 Total: -11.38 kcal Atomic # 7 Polarization: -37.17 SS G_CDS: -0.37 Total: -37.53 kcal Atomic # 8 Polarization: -12.23 SS G_CDS: -0.70 Total: -12.93 kcal Atomic # 14 Polarization: 21.98 SS G_CDS: -4.59 Total: 17.39 kcal Total LS contribution 5.11 Total: 5.11 kcal Total: -32.50 -8.40 -40.90 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000595614371.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -67.148 kcal (2) G-P(sol) polarization free energy of solvation -32.500 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -99.648 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.403 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.903 kcal (6) G-S(sol) free energy of system = (1) + (5) -108.051 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds