Wall clock time and date at job start Mon Mar 30 2020 01:31:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 O 1.45196 * 109.47169 * 2 1 4 4 C 1.34234 * 116.99998 * 180.02562 * 3 2 1 5 5 O 1.20825 * 119.99911 * 0.02562 * 4 3 2 6 6 C 1.50697 * 119.99969 * 180.02562 * 4 3 2 7 7 C 1.53002 * 109.46916 * 179.97438 * 6 4 3 8 8 C 1.52999 * 109.46816 * 180.02562 * 7 6 4 9 9 N 1.46897 * 109.47150 * 180.02562 * 8 7 6 10 10 C 1.46851 * 110.99867 * 66.04321 * 9 8 7 11 11 C 1.53036 * 109.52375 * 174.16127 * 10 9 8 12 12 C 1.53117 * 109.28041 * 59.17925 * 11 10 9 13 13 C 1.53117 * 109.16356 * 302.35058 * 12 11 10 14 14 H 1.09005 * 109.50208 * 297.71320 * 13 12 11 15 15 C 1.50693 * 109.50679 * 177.63028 * 13 12 11 16 16 H 1.08001 * 120.00399 * 275.19810 * 15 13 12 17 17 C 1.37879 * 120.00158 * 95.19634 * 15 13 12 18 18 N 1.31511 * 120.00066 * 185.51457 * 17 15 13 19 19 Si 1.86802 * 119.99815 * 5.51914 * 17 15 13 20 20 H 1.48503 * 109.47123 * 84.78199 * 19 17 15 21 21 H 1.48501 * 109.47068 * 204.77931 * 19 17 15 22 22 H 1.48495 * 109.47080 * 324.78141 * 19 17 15 23 23 C 1.46851 * 111.00057 * 301.83666 * 9 8 7 24 24 H 1.09001 * 109.47008 * 59.99681 * 1 2 3 25 25 H 1.08996 * 109.46825 * 179.97438 * 1 2 3 26 26 H 1.08994 * 109.46607 * 299.99715 * 1 2 3 27 27 H 1.09003 * 109.47146 * 120.00853 * 2 1 3 28 28 H 1.09003 * 109.46606 * 240.00006 * 2 1 3 29 29 H 1.08995 * 109.47512 * 300.00482 * 6 4 3 30 30 H 1.09005 * 109.46779 * 60.00125 * 6 4 3 31 31 H 1.08994 * 109.47443 * 300.00121 * 7 6 4 32 32 H 1.08997 * 109.46567 * 60.00776 * 7 6 4 33 33 H 1.09003 * 109.47236 * 300.00004 * 8 7 6 34 34 H 1.09000 * 109.47301 * 60.00041 * 8 7 6 35 35 H 1.08994 * 109.46195 * 294.18187 * 10 9 8 36 36 H 1.09001 * 109.45874 * 54.16112 * 10 9 8 37 37 H 1.08999 * 109.50774 * 179.12187 * 11 10 9 38 38 H 1.09006 * 109.50645 * 299.20596 * 11 10 9 39 39 H 1.09002 * 109.51759 * 62.24986 * 12 11 10 40 40 H 1.08994 * 109.52605 * 182.37390 * 12 11 10 41 41 H 0.97008 * 119.99580 * 180.02562 * 18 17 15 42 42 H 1.08997 * 109.45970 * 305.85514 * 23 9 8 43 43 H 1.09004 * 109.45991 * 65.82490 * 23 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 8 2.0141 1.3689 0.0000 4 6 3.3448 1.5448 -0.0005 5 8 4.0808 0.5866 -0.0015 6 6 3.9208 2.9373 0.0000 7 6 5.4488 2.8572 -0.0001 8 6 6.0335 4.2710 0.0011 9 7 7.5005 4.1942 0.0003 10 6 7.9963 3.6120 -1.2534 11 6 9.5249 3.6812 -1.2800 12 6 10.0867 2.9121 -0.0811 13 6 9.5171 3.5073 1.2095 14 1 9.8351 4.5457 1.3027 15 6 10.0195 2.7192 2.3916 16 1 9.5061 1.8200 2.6988 17 6 11.1347 3.1459 3.0811 18 7 11.6373 2.4031 4.0429 19 14 11.9315 4.7792 2.6489 20 1 11.2360 5.8755 3.3699 21 1 13.3616 4.7534 3.0484 22 1 11.8306 5.0073 1.1851 23 6 7.9887 3.4432 1.1640 24 1 -0.3633 0.5139 -0.8900 25 1 -0.3633 -1.0276 -0.0005 26 1 -0.3632 0.5138 0.8900 27 1 1.8934 -0.5140 0.8899 28 1 1.8933 -0.5139 -0.8900 29 1 3.5844 3.4701 -0.8894 30 1 3.5853 3.4689 0.8905 31 1 5.7848 2.3247 0.8895 32 1 5.7845 2.3255 -0.8904 33 1 5.6975 4.8040 -0.8884 34 1 5.6976 4.8024 0.8915 35 1 7.6785 2.5717 -1.3213 36 1 7.5929 4.1709 -2.0978 37 1 9.8934 3.2349 -2.2037 38 1 9.8431 4.7224 -1.2266 39 1 9.8012 1.8628 -0.1553 40 1 11.1735 2.9942 -0.0726 41 1 12.4216 2.7036 4.5282 42 1 7.5796 3.8793 2.0753 43 1 7.6711 2.4035 1.0847 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000595614371.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:31:21 Heat of formation + Delta-G solvation = -129.206687 kcal Electronic energy + Delta-G solvation = -20965.366991 eV Core-core repulsion = 17815.749011 eV Total energy + Delta-G solvation = -3149.617981 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 269.178 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -41.58218 -40.12239 -37.86863 -36.23293 -34.60000 -33.13462 -32.35745 -31.94845 -28.04607 -26.95217 -25.28151 -23.84156 -23.09240 -22.29026 -21.70016 -20.08062 -19.00891 -18.67305 -17.87354 -17.46676 -16.72884 -16.25608 -15.87160 -15.69279 -15.22810 -14.93779 -14.90184 -14.58225 -14.36360 -14.07700 -13.72929 -13.50787 -13.07545 -13.00600 -12.96403 -12.79951 -12.73419 -12.61135 -12.44153 -12.31356 -11.87505 -11.80350 -11.59954 -11.58368 -11.40959 -11.25962 -11.03671 -10.81441 -10.62070 -9.11865 -8.29133 -6.32974 1.14570 1.37061 1.37670 1.50445 1.67416 2.36826 3.03549 3.16887 3.66457 3.90431 3.93731 3.97504 4.05583 4.17749 4.18344 4.27043 4.30241 4.44300 4.47710 4.59403 4.61096 4.71170 4.82719 4.83642 4.87192 4.89703 4.90801 5.00068 5.08335 5.10926 5.12662 5.24486 5.29436 5.33452 5.46023 5.57556 5.66217 5.76581 6.16873 6.34147 6.40644 6.70080 6.75545 7.33395 8.88293 Molecular weight = 269.18amu Principal moments of inertia in cm(-1) A = 0.027304 B = 0.003712 C = 0.003482 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1025.261328 B = 7542.069076 C = 8039.213309 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C 0.050 3.950 3 O -0.360 6.360 4 C 0.457 3.543 5 O -0.551 6.551 6 C -0.098 4.098 7 C -0.144 4.144 8 C 0.059 3.941 9 N -0.543 5.543 10 C 0.059 3.941 11 C -0.114 4.114 12 C -0.113 4.113 13 C 0.018 3.982 14 H 0.037 0.963 15 C -0.517 4.517 16 H 0.023 0.977 17 C 0.010 3.990 18 N -0.953 5.953 19 Si 0.948 3.052 20 H -0.265 1.265 21 H -0.289 1.289 22 H -0.244 1.244 23 C 0.082 3.918 24 H 0.073 0.927 25 H 0.097 0.903 26 H 0.069 0.931 27 H 0.060 0.940 28 H 0.065 0.935 29 H 0.141 0.859 30 H 0.129 0.871 31 H 0.041 0.959 32 H 0.058 0.942 33 H 0.106 0.894 34 H 0.085 0.915 35 H 0.023 0.977 36 H 0.099 0.901 37 H 0.078 0.922 38 H 0.065 0.935 39 H 0.033 0.967 40 H 0.038 0.962 41 H 0.265 0.735 42 H 0.058 0.942 43 H 0.011 0.989 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.162 3.941 -13.231 25.267 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.023 4.023 3 O -0.277 6.277 4 C 0.302 3.698 5 O -0.441 6.441 6 C -0.136 4.136 7 C -0.184 4.184 8 C -0.069 4.069 9 N -0.266 5.266 10 C -0.069 4.069 11 C -0.152 4.152 12 C -0.151 4.151 13 C -0.002 4.002 14 H 0.055 0.945 15 C -0.556 4.556 16 H 0.041 0.959 17 C -0.186 4.186 18 N -0.593 5.593 19 Si 0.772 3.228 20 H -0.190 1.190 21 H -0.216 1.216 22 H -0.168 1.168 23 C -0.046 4.046 24 H 0.092 0.908 25 H 0.116 0.884 26 H 0.088 0.912 27 H 0.079 0.921 28 H 0.084 0.916 29 H 0.159 0.841 30 H 0.147 0.853 31 H 0.060 0.940 32 H 0.077 0.923 33 H 0.124 0.876 34 H 0.103 0.897 35 H 0.041 0.959 36 H 0.117 0.883 37 H 0.097 0.903 38 H 0.084 0.916 39 H 0.052 0.948 40 H 0.056 0.944 41 H 0.074 0.926 42 H 0.076 0.924 43 H 0.029 0.971 Dipole moment (debyes) X Y Z Total from point charges -20.657 4.101 -13.074 24.789 hybrid contribution 0.628 -1.298 0.627 1.572 sum -20.029 2.803 -12.447 23.748 Atomic orbital electron populations 1.21812 0.90028 1.04341 1.03916 1.23265 0.97363 0.79572 1.02142 1.86511 1.24118 1.33339 1.83718 1.24565 0.80480 0.93854 0.70905 1.90696 1.61357 1.44982 1.47085 1.21436 0.94479 0.89201 1.08480 1.22068 0.94142 1.00129 1.02018 1.22336 0.85789 0.94224 1.04555 1.62258 1.09564 1.52366 1.02432 1.22106 0.95209 0.97327 0.92237 1.21641 0.95326 1.00645 0.97580 1.21748 0.99004 0.98419 0.95918 1.19123 0.92645 0.95740 0.92655 0.94456 1.21272 1.11599 1.09583 1.13133 0.95889 1.25982 0.97112 1.01022 0.94503 1.70080 1.24213 1.39905 1.25146 0.85715 0.76998 0.79702 0.80373 1.19007 1.21583 1.16794 1.21913 0.96061 0.94226 0.92382 0.90837 0.88440 0.91170 0.92138 0.91609 0.84126 0.85282 0.93966 0.92317 0.87588 0.89708 0.95908 0.88267 0.90335 0.91630 0.94765 0.94352 0.92568 0.92373 0.97126 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.54 10.29 71.98 0.74 -0.80 16 2 C 0.05 0.90 6.19 71.98 0.45 1.34 16 3 O -0.36 -7.55 10.22 -51.46 -0.53 -8.08 16 4 C 0.46 11.16 7.96 71.23 0.57 11.73 16 5 O -0.55 -18.42 15.73 21.97 0.35 -18.07 16 6 C -0.10 -1.71 5.81 29.85 0.17 -1.54 16 7 C -0.14 -3.59 3.81 30.59 0.12 -3.48 16 8 C 0.06 1.35 5.36 86.30 0.46 1.81 16 9 N -0.54 -17.39 4.86 -896.35 -4.35 -21.75 16 10 C 0.06 1.72 5.05 86.32 0.44 2.16 16 11 C -0.11 -3.72 6.09 30.65 0.19 -3.53 16 12 C -0.11 -4.85 5.27 30.67 0.16 -4.69 16 13 C 0.02 0.85 1.94 -11.49 -0.02 0.82 16 14 H 0.04 1.80 5.27 -2.38 -0.01 1.78 16 15 C -0.52 -30.63 8.86 25.60 0.23 -30.40 16 16 H 0.02 1.52 8.06 -2.91 -0.02 1.50 16 17 C 0.01 0.62 5.47 84.66 0.46 1.08 16 18 N -0.95 -61.31 13.96 21.45 0.30 -61.01 16 19 Si 0.95 45.60 27.01 68.60 1.85 47.45 16 20 H -0.27 -12.21 7.11 99.48 0.71 -11.51 16 21 H -0.29 -13.71 7.11 99.48 0.71 -13.00 16 22 H -0.24 -10.93 6.80 99.48 0.68 -10.25 16 23 C 0.08 3.41 4.10 86.33 0.35 3.76 16 24 H 0.07 0.70 8.14 -2.39 -0.02 0.68 16 25 H 0.10 0.69 8.14 -2.39 -0.02 0.67 16 26 H 0.07 0.73 8.14 -2.39 -0.02 0.71 16 27 H 0.06 1.18 8.13 -2.39 -0.02 1.16 16 28 H 0.07 1.20 8.13 -2.39 -0.02 1.18 16 29 H 0.14 1.49 8.14 -2.39 -0.02 1.47 16 30 H 0.13 1.72 8.14 -2.38 -0.02 1.71 16 31 H 0.04 1.37 6.46 -2.39 -0.02 1.35 16 32 H 0.06 1.61 6.64 -2.39 -0.02 1.59 16 33 H 0.11 1.75 8.06 -2.39 -0.02 1.73 16 34 H 0.08 1.82 8.14 -2.39 -0.02 1.80 16 35 H 0.02 0.71 6.75 -2.39 -0.02 0.70 16 36 H 0.10 2.22 8.06 -2.39 -0.02 2.20 16 37 H 0.08 2.16 8.14 -2.39 -0.02 2.14 16 38 H 0.06 2.11 8.14 -2.38 -0.02 2.09 16 39 H 0.03 1.53 8.14 -2.39 -0.02 1.51 16 40 H 0.04 1.71 8.14 -2.39 -0.02 1.69 16 41 H 0.27 15.93 8.31 -92.70 -0.77 15.16 16 42 H 0.06 2.46 8.12 -2.39 -0.02 2.44 16 43 H 0.01 0.47 6.61 -2.38 -0.02 0.46 16 Total: -1.00 -75.07 339.00 2.86 -72.21 By element: Atomic # 1 Polarization: 10.04 SS G_CDS: 0.93 Total: 10.97 kcal Atomic # 6 Polarization: -26.04 SS G_CDS: 4.31 Total: -21.72 kcal Atomic # 7 Polarization: -78.71 SS G_CDS: -4.06 Total: -82.76 kcal Atomic # 8 Polarization: -25.97 SS G_CDS: -0.18 Total: -26.15 kcal Atomic # 14 Polarization: 45.60 SS G_CDS: 1.85 Total: 47.45 kcal Total: -75.07 2.86 -72.21 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000595614371.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -56.993 kcal (2) G-P(sol) polarization free energy of solvation -75.071 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -132.064 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.857 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.214 kcal (6) G-S(sol) free energy of system = (1) + (5) -129.207 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds