Wall clock time and date at job start Mon Mar 30 2020 01:31:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 O 1.45205 * 109.47519 * 2 1 4 4 C 1.34223 * 116.99983 * 180.02562 * 3 2 1 5 5 O 1.20823 * 120.00468 * 359.97438 * 4 3 2 6 6 C 1.50704 * 119.99827 * 179.97438 * 4 3 2 7 7 C 1.52994 * 109.47041 * 179.97438 * 6 4 3 8 8 C 1.53003 * 109.47262 * 179.97438 * 7 6 4 9 9 N 1.46892 * 109.47390 * 179.97438 * 8 7 6 10 10 C 1.46842 * 111.00192 * 293.95474 * 9 8 7 11 11 C 1.53039 * 109.52666 * 185.84212 * 10 9 8 12 12 C 1.53123 * 109.27546 * 300.81951 * 11 10 9 13 13 C 1.53120 * 109.21163 * 57.62218 * 12 11 10 14 14 H 1.09000 * 109.50719 * 62.32149 * 13 12 11 15 15 C 1.50705 * 109.50009 * 182.43636 * 13 12 11 16 16 H 1.08003 * 119.99487 * 120.00018 * 15 13 12 17 17 C 1.37877 * 119.99919 * 299.99707 * 15 13 12 18 18 N 1.31505 * 120.00221 * 0.02562 * 17 15 13 19 19 Si 1.86803 * 119.99678 * 180.02562 * 17 15 13 20 20 H 1.48502 * 109.47172 * 0.02562 * 19 17 15 21 21 H 1.48491 * 109.47080 * 120.00253 * 19 17 15 22 22 H 1.48504 * 109.46811 * 240.00541 * 19 17 15 23 23 C 1.46848 * 110.99938 * 58.16403 * 9 8 7 24 24 H 1.09000 * 109.47223 * 300.00433 * 1 2 3 25 25 H 1.08998 * 109.46633 * 59.99932 * 1 2 3 26 26 H 1.08993 * 109.47093 * 180.02562 * 1 2 3 27 27 H 1.09000 * 109.47223 * 239.99567 * 2 1 3 28 28 H 1.09008 * 109.46995 * 119.99722 * 2 1 3 29 29 H 1.08992 * 109.47123 * 59.99259 * 6 4 3 30 30 H 1.09004 * 109.46767 * 299.99690 * 6 4 3 31 31 H 1.09001 * 109.47256 * 60.00117 * 7 6 4 32 32 H 1.08991 * 109.47606 * 299.99556 * 7 6 4 33 33 H 1.08997 * 109.47211 * 59.99509 * 8 7 6 34 34 H 1.09004 * 109.46865 * 300.00315 * 8 7 6 35 35 H 1.08997 * 109.46434 * 65.82550 * 10 9 8 36 36 H 1.09006 * 109.45199 * 305.85056 * 10 9 8 37 37 H 1.08999 * 109.50420 * 180.88146 * 11 10 9 38 38 H 1.09002 * 109.53427 * 60.77649 * 11 10 9 39 39 H 1.09002 * 109.52319 * 177.56011 * 12 11 10 40 40 H 1.08995 * 109.52318 * 297.68693 * 12 11 10 41 41 H 0.96996 * 120.00390 * 179.97438 * 18 17 15 42 42 H 1.08999 * 109.46555 * 294.17605 * 23 9 8 43 43 H 1.08998 * 109.46337 * 54.15813 * 23 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0141 1.3690 0.0000 4 6 3.3448 1.5447 -0.0005 5 8 4.0808 0.5866 -0.0005 6 6 3.9209 2.9373 -0.0012 7 6 5.4487 2.8572 -0.0010 8 6 6.0336 4.2710 -0.0023 9 7 7.5005 4.1941 -0.0016 10 6 7.9964 3.6120 1.2521 11 6 9.5250 3.6812 1.2787 12 6 10.0867 2.9120 0.0798 13 6 9.5172 3.5058 -1.2116 14 1 9.8353 4.5440 -1.3060 15 6 10.0189 2.7156 -2.3927 16 1 9.3178 2.2200 -3.0479 17 6 11.3729 2.6256 -2.6369 18 7 12.2265 3.2288 -1.8389 19 14 11.9947 1.6468 -4.1014 20 1 10.8410 1.0699 -4.8371 21 1 12.7605 2.5417 -5.0057 22 1 12.8770 0.5510 -3.6257 23 6 7.9887 3.4431 -1.1653 24 1 -0.3634 0.5139 0.8899 25 1 -0.3632 0.5138 -0.8900 26 1 -0.3633 -1.0276 0.0005 27 1 1.8933 -0.5139 -0.8899 28 1 1.8933 -0.5138 0.8901 29 1 3.5852 3.4698 0.8887 30 1 3.5846 3.4692 -0.8913 31 1 5.7847 2.3246 -0.8908 32 1 5.7846 2.3256 0.8891 33 1 5.6976 4.8040 0.8871 34 1 5.6977 4.8023 -0.8928 35 1 7.6787 2.5716 1.3201 36 1 7.5928 4.1710 2.0964 37 1 9.8934 3.2349 2.2024 38 1 9.8437 4.7222 1.2250 39 1 11.1736 2.9950 0.0705 40 1 9.8022 1.8625 0.1546 41 1 13.1791 3.1652 -2.0104 42 1 7.6710 2.4034 -1.0860 43 1 7.5798 3.8793 -2.0766 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000595614372.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:31:23 Heat of formation + Delta-G solvation = -108.040698 kcal Electronic energy + Delta-G solvation = -20952.443369 eV Core-core repulsion = 17803.743215 eV Total energy + Delta-G solvation = -3148.700154 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 269.178 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -40.58945 -38.52944 -36.85937 -34.69319 -32.84329 -32.01104 -30.99048 -29.81521 -26.73491 -24.90335 -24.02094 -22.90087 -21.50388 -21.01545 -20.57716 -18.26996 -17.72903 -16.95560 -16.58065 -16.12881 -15.29654 -14.89363 -14.40896 -14.18152 -13.90730 -13.72735 -13.48598 -13.14869 -12.85003 -12.57674 -12.34909 -12.12332 -11.90361 -11.80194 -11.70556 -11.55689 -11.26016 -10.97360 -10.86404 -10.75339 -10.60213 -10.54577 -10.33101 -9.97889 -9.76365 -9.41716 -8.98641 -8.64501 -8.26144 -7.58865 -5.93095 -3.98877 2.13002 2.51609 3.33080 3.40945 3.45148 4.43033 4.51721 4.60796 4.62822 4.71177 4.91574 4.92441 4.98445 5.28615 5.37005 5.42380 5.45878 5.48136 5.57944 5.66131 5.72896 5.87865 5.90433 6.06384 6.14221 6.28683 6.37095 6.41512 6.51053 6.57690 6.77940 6.82701 7.03331 7.27531 7.45612 7.66340 7.70844 7.80330 7.87415 8.13824 8.22777 8.53609 9.05516 9.65294 11.12962 Molecular weight = 269.18amu Principal moments of inertia in cm(-1) A = 0.021867 B = 0.003797 C = 0.003405 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1280.151958 B = 7372.288226 C = 8221.766747 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C 0.060 3.940 3 O -0.363 6.363 4 C 0.458 3.542 5 O -0.504 6.504 6 C -0.107 4.107 7 C -0.151 4.151 8 C 0.057 3.943 9 N -0.535 5.535 10 C 0.060 3.940 11 C -0.118 4.118 12 C -0.111 4.111 13 C 0.054 3.946 14 H 0.033 0.967 15 C -0.512 4.512 16 H 0.054 0.946 17 C 0.062 3.938 18 N -0.889 5.889 19 Si 0.889 3.111 20 H -0.274 1.274 21 H -0.285 1.285 22 H -0.285 1.285 23 C 0.063 3.937 24 H 0.066 0.934 25 H 0.066 0.934 26 H 0.078 0.922 27 H 0.069 0.931 28 H 0.068 0.932 29 H 0.104 0.896 30 H 0.106 0.894 31 H 0.078 0.922 32 H 0.071 0.929 33 H 0.068 0.932 34 H 0.073 0.927 35 H 0.027 0.973 36 H 0.056 0.944 37 H 0.045 0.955 38 H 0.060 0.940 39 H 0.090 0.910 40 H 0.029 0.971 41 H 0.258 0.742 42 H 0.025 0.975 43 H 0.058 0.942 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.930 -1.256 6.067 20.871 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.014 4.014 3 O -0.281 6.281 4 C 0.301 3.699 5 O -0.390 6.390 6 C -0.145 4.145 7 C -0.191 4.191 8 C -0.072 4.072 9 N -0.257 5.257 10 C -0.068 4.068 11 C -0.156 4.156 12 C -0.150 4.150 13 C 0.035 3.965 14 H 0.051 0.949 15 C -0.551 4.551 16 H 0.072 0.928 17 C -0.139 4.139 18 N -0.528 5.528 19 Si 0.717 3.283 20 H -0.199 1.199 21 H -0.211 1.211 22 H -0.211 1.211 23 C -0.063 4.063 24 H 0.085 0.915 25 H 0.085 0.915 26 H 0.097 0.903 27 H 0.088 0.912 28 H 0.087 0.913 29 H 0.122 0.878 30 H 0.124 0.876 31 H 0.097 0.903 32 H 0.090 0.910 33 H 0.086 0.914 34 H 0.091 0.909 35 H 0.045 0.955 36 H 0.075 0.925 37 H 0.064 0.936 38 H 0.078 0.922 39 H 0.109 0.891 40 H 0.048 0.952 41 H 0.068 0.932 42 H 0.043 0.957 43 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges -19.335 -1.064 6.052 20.288 hybrid contribution 0.046 -1.668 -0.710 1.813 sum -19.289 -2.732 5.342 20.201 Atomic orbital electron populations 1.21800 0.92678 1.02926 1.03474 1.23009 0.95293 0.80459 1.02654 1.86508 1.25018 1.32263 1.84300 1.24019 0.80281 0.93343 0.72306 1.90703 1.60312 1.43306 1.44715 1.21408 0.97140 0.90311 1.05642 1.22237 0.91566 1.00843 1.04415 1.22196 0.88937 0.93969 1.02074 1.62259 1.06309 1.53592 1.03569 1.22057 0.96964 0.96550 0.91264 1.21677 0.93377 1.01359 0.99140 1.21655 1.03478 0.96386 0.93432 1.18671 0.87438 0.97240 0.93126 0.94880 1.21200 0.91740 1.31647 1.10545 0.92822 1.24932 0.96976 0.95619 0.96358 1.69898 1.01970 1.43609 1.37315 0.86584 0.78833 0.79927 0.82931 1.19861 1.21070 1.21116 1.22347 0.99514 0.94126 0.90343 0.91520 0.91464 0.90299 0.91229 0.91310 0.87815 0.87616 0.90292 0.91018 0.91376 0.90889 0.95502 0.92536 0.93619 0.92150 0.89139 0.95182 0.93162 0.95692 0.92380 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.95 10.29 37.16 0.38 -0.57 16 2 C 0.06 0.56 6.19 37.16 0.23 0.79 16 3 O -0.36 -4.10 10.22 -39.24 -0.40 -4.50 16 4 C 0.46 5.89 7.96 36.01 0.29 6.18 16 5 O -0.50 -8.32 15.73 -18.75 -0.29 -8.61 16 6 C -0.11 -1.11 5.81 -27.88 -0.16 -1.28 16 7 C -0.15 -2.08 3.81 -26.73 -0.10 -2.18 16 8 C 0.06 0.80 5.36 -3.83 -0.02 0.78 16 9 N -0.53 -9.83 4.86 -234.67 -1.14 -10.97 16 10 C 0.06 1.06 5.05 -3.84 -0.02 1.04 16 11 C -0.12 -2.35 6.10 -26.65 -0.16 -2.52 16 12 C -0.11 -2.71 5.02 -26.61 -0.13 -2.84 16 13 C 0.05 1.38 2.27 -91.68 -0.21 1.17 16 14 H 0.03 0.93 8.14 -51.93 -0.42 0.51 16 15 C -0.51 -14.33 8.57 -34.44 -0.30 -14.62 16 16 H 0.05 1.49 7.75 -52.48 -0.41 1.08 16 17 C 0.06 1.75 5.30 -17.82 -0.09 1.65 16 18 N -0.89 -25.75 11.35 55.43 0.63 -25.12 16 19 Si 0.89 21.64 29.54 -169.99 -5.02 16.62 16 20 H -0.27 -6.60 7.11 56.52 0.40 -6.19 16 21 H -0.28 -6.87 7.11 56.52 0.40 -6.47 16 22 H -0.28 -6.90 7.11 56.52 0.40 -6.50 16 23 C 0.06 1.37 4.06 -3.83 -0.02 1.35 16 24 H 0.07 0.40 8.14 -51.93 -0.42 -0.03 16 25 H 0.07 0.41 8.14 -51.93 -0.42 -0.01 16 26 H 0.08 0.36 8.14 -51.93 -0.42 -0.06 16 27 H 0.07 0.67 8.13 -51.93 -0.42 0.24 16 28 H 0.07 0.64 8.14 -51.92 -0.42 0.22 16 29 H 0.10 0.84 8.14 -51.93 -0.42 0.42 16 30 H 0.11 0.91 8.14 -51.93 -0.42 0.49 16 31 H 0.08 1.29 6.46 -51.93 -0.34 0.95 16 32 H 0.07 1.08 6.64 -51.93 -0.34 0.74 16 33 H 0.07 0.82 8.06 -51.93 -0.42 0.40 16 34 H 0.07 0.96 8.14 -51.93 -0.42 0.53 16 35 H 0.03 0.49 6.75 -51.93 -0.35 0.14 16 36 H 0.06 0.87 8.06 -51.93 -0.42 0.45 16 37 H 0.05 0.82 8.14 -51.93 -0.42 0.40 16 38 H 0.06 1.24 8.14 -51.93 -0.42 0.82 16 39 H 0.09 2.45 6.15 -51.93 -0.32 2.13 16 40 H 0.03 0.74 8.14 -51.93 -0.42 0.31 16 41 H 0.26 7.13 8.31 -40.82 -0.34 6.79 16 42 H 0.02 0.55 6.61 -51.93 -0.34 0.21 16 43 H 0.06 1.23 8.12 -51.93 -0.42 0.81 16 LS Contribution 339.39 15.07 5.11 5.11 Total: -1.00 -31.14 339.39 -8.99 -40.13 By element: Atomic # 1 Polarization: 5.95 SS G_CDS: -7.57 Total: -1.61 kcal Atomic # 6 Polarization: -10.74 SS G_CDS: -0.31 Total: -11.05 kcal Atomic # 7 Polarization: -35.58 SS G_CDS: -0.51 Total: -36.09 kcal Atomic # 8 Polarization: -12.41 SS G_CDS: -0.70 Total: -13.11 kcal Atomic # 14 Polarization: 21.64 SS G_CDS: -5.02 Total: 16.62 kcal Total LS contribution 5.11 Total: 5.11 kcal Total: -31.14 -8.99 -40.13 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000595614372.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -67.906 kcal (2) G-P(sol) polarization free energy of solvation -31.141 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -99.047 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.994 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.135 kcal (6) G-S(sol) free energy of system = (1) + (5) -108.041 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds