Wall clock time and date at job start Mon Mar 30 2020 01:31:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 O 1.45205 * 109.47519 * 2 1 4 4 C 1.34223 * 116.99983 * 180.02562 * 3 2 1 5 5 O 1.20823 * 120.00468 * 359.97438 * 4 3 2 6 6 C 1.50704 * 119.99827 * 179.97438 * 4 3 2 7 7 C 1.52994 * 109.47041 * 179.97438 * 6 4 3 8 8 C 1.53003 * 109.47262 * 179.97438 * 7 6 4 9 9 N 1.46892 * 109.47390 * 179.97438 * 8 7 6 10 10 C 1.46842 * 111.00192 * 293.95474 * 9 8 7 11 11 C 1.53039 * 109.52666 * 185.84212 * 10 9 8 12 12 C 1.53123 * 109.27546 * 300.81951 * 11 10 9 13 13 C 1.53120 * 109.21163 * 57.62218 * 12 11 10 14 14 H 1.09000 * 109.50719 * 62.32149 * 13 12 11 15 15 C 1.50705 * 109.50009 * 182.43636 * 13 12 11 16 16 H 1.08003 * 119.99487 * 120.00018 * 15 13 12 17 17 C 1.37877 * 119.99919 * 299.99707 * 15 13 12 18 18 N 1.31505 * 120.00221 * 0.02562 * 17 15 13 19 19 Si 1.86803 * 119.99678 * 180.02562 * 17 15 13 20 20 H 1.48502 * 109.47172 * 0.02562 * 19 17 15 21 21 H 1.48491 * 109.47080 * 120.00253 * 19 17 15 22 22 H 1.48504 * 109.46811 * 240.00541 * 19 17 15 23 23 C 1.46848 * 110.99938 * 58.16403 * 9 8 7 24 24 H 1.09000 * 109.47223 * 300.00433 * 1 2 3 25 25 H 1.08998 * 109.46633 * 59.99932 * 1 2 3 26 26 H 1.08993 * 109.47093 * 180.02562 * 1 2 3 27 27 H 1.09000 * 109.47223 * 239.99567 * 2 1 3 28 28 H 1.09008 * 109.46995 * 119.99722 * 2 1 3 29 29 H 1.08992 * 109.47123 * 59.99259 * 6 4 3 30 30 H 1.09004 * 109.46767 * 299.99690 * 6 4 3 31 31 H 1.09001 * 109.47256 * 60.00117 * 7 6 4 32 32 H 1.08991 * 109.47606 * 299.99556 * 7 6 4 33 33 H 1.08997 * 109.47211 * 59.99509 * 8 7 6 34 34 H 1.09004 * 109.46865 * 300.00315 * 8 7 6 35 35 H 1.08997 * 109.46434 * 65.82550 * 10 9 8 36 36 H 1.09006 * 109.45199 * 305.85056 * 10 9 8 37 37 H 1.08999 * 109.50420 * 180.88146 * 11 10 9 38 38 H 1.09002 * 109.53427 * 60.77649 * 11 10 9 39 39 H 1.09002 * 109.52319 * 177.56011 * 12 11 10 40 40 H 1.08995 * 109.52318 * 297.68693 * 12 11 10 41 41 H 0.96996 * 120.00390 * 179.97438 * 18 17 15 42 42 H 1.08999 * 109.46555 * 294.17605 * 23 9 8 43 43 H 1.08998 * 109.46337 * 54.15813 * 23 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0141 1.3690 0.0000 4 6 3.3448 1.5447 -0.0005 5 8 4.0808 0.5866 -0.0005 6 6 3.9209 2.9373 -0.0012 7 6 5.4487 2.8572 -0.0010 8 6 6.0336 4.2710 -0.0023 9 7 7.5005 4.1941 -0.0016 10 6 7.9964 3.6120 1.2521 11 6 9.5250 3.6812 1.2787 12 6 10.0867 2.9120 0.0798 13 6 9.5172 3.5058 -1.2116 14 1 9.8353 4.5440 -1.3060 15 6 10.0189 2.7156 -2.3927 16 1 9.3178 2.2200 -3.0479 17 6 11.3729 2.6256 -2.6369 18 7 12.2265 3.2288 -1.8389 19 14 11.9947 1.6468 -4.1014 20 1 10.8410 1.0699 -4.8371 21 1 12.7605 2.5417 -5.0057 22 1 12.8770 0.5510 -3.6257 23 6 7.9887 3.4431 -1.1653 24 1 -0.3634 0.5139 0.8899 25 1 -0.3632 0.5138 -0.8900 26 1 -0.3633 -1.0276 0.0005 27 1 1.8933 -0.5139 -0.8899 28 1 1.8933 -0.5138 0.8901 29 1 3.5852 3.4698 0.8887 30 1 3.5846 3.4692 -0.8913 31 1 5.7847 2.3246 -0.8908 32 1 5.7846 2.3256 0.8891 33 1 5.6976 4.8040 0.8871 34 1 5.6977 4.8023 -0.8928 35 1 7.6787 2.5716 1.3201 36 1 7.5928 4.1710 2.0964 37 1 9.8934 3.2349 2.2024 38 1 9.8437 4.7222 1.2250 39 1 11.1736 2.9950 0.0705 40 1 9.8022 1.8625 0.1546 41 1 13.1791 3.1652 -2.0104 42 1 7.6710 2.4034 -1.0860 43 1 7.5798 3.8793 -2.0766 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000595614372.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:31:23 Heat of formation + Delta-G solvation = -126.941393 kcal Electronic energy + Delta-G solvation = -20953.262965 eV Core-core repulsion = 17803.743215 eV Total energy + Delta-G solvation = -3149.519750 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 269.178 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -41.57255 -40.04217 -37.85386 -36.25461 -34.52047 -32.96234 -32.22870 -31.67627 -27.93490 -26.93530 -25.20897 -23.81642 -23.20166 -22.37707 -21.69598 -19.93482 -18.77497 -18.40855 -17.86402 -17.37369 -16.74396 -16.21174 -15.99815 -15.62769 -15.22837 -14.90135 -14.74131 -14.51533 -14.16230 -13.92331 -13.71284 -13.34232 -13.05203 -12.96695 -12.89004 -12.77778 -12.62718 -12.58628 -12.45681 -12.41587 -11.90112 -11.71831 -11.58481 -11.57649 -11.39149 -11.37119 -10.84554 -10.65037 -10.38460 -9.06913 -8.08858 -6.22831 1.15509 1.38490 1.39879 1.51569 1.68005 2.41894 3.17690 3.18988 3.67534 3.92000 3.94523 3.98307 4.06377 4.24205 4.28687 4.31113 4.34921 4.48070 4.54600 4.63794 4.67499 4.76533 4.84212 4.86853 4.90270 4.93280 4.96114 5.09647 5.13233 5.14417 5.20544 5.34242 5.41668 5.46729 5.53618 5.63147 5.97623 6.12743 6.21620 6.42215 6.46929 6.71095 6.90182 7.44903 8.95989 Molecular weight = 269.18amu Principal moments of inertia in cm(-1) A = 0.021867 B = 0.003797 C = 0.003405 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1280.151958 B = 7372.288226 C = 8221.766747 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C 0.050 3.950 3 O -0.360 6.360 4 C 0.458 3.542 5 O -0.550 6.550 6 C -0.098 4.098 7 C -0.143 4.143 8 C 0.059 3.941 9 N -0.545 5.545 10 C 0.064 3.936 11 C -0.112 4.112 12 C -0.106 4.106 13 C 0.051 3.949 14 H -0.002 1.002 15 C -0.536 4.536 16 H 0.048 0.952 17 C 0.013 3.987 18 N -0.915 5.915 19 Si 0.953 3.047 20 H -0.269 1.269 21 H -0.277 1.277 22 H -0.280 1.280 23 C 0.081 3.919 24 H 0.072 0.928 25 H 0.070 0.930 26 H 0.097 0.903 27 H 0.061 0.939 28 H 0.065 0.935 29 H 0.139 0.861 30 H 0.131 0.869 31 H 0.045 0.955 32 H 0.056 0.944 33 H 0.102 0.898 34 H 0.085 0.915 35 H 0.022 0.978 36 H 0.094 0.906 37 H 0.067 0.933 38 H 0.053 0.947 39 H 0.057 0.943 40 H 0.016 0.984 41 H 0.260 0.740 42 H 0.013 0.987 43 H 0.056 0.944 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.197 -0.667 6.668 23.187 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.023 4.023 3 O -0.277 6.277 4 C 0.303 3.697 5 O -0.440 6.440 6 C -0.136 4.136 7 C -0.182 4.182 8 C -0.069 4.069 9 N -0.268 5.268 10 C -0.064 4.064 11 C -0.150 4.150 12 C -0.144 4.144 13 C 0.032 3.968 14 H 0.016 0.984 15 C -0.575 4.575 16 H 0.066 0.934 17 C -0.185 4.185 18 N -0.555 5.555 19 Si 0.779 3.221 20 H -0.194 1.194 21 H -0.203 1.203 22 H -0.206 1.206 23 C -0.046 4.046 24 H 0.091 0.909 25 H 0.089 0.911 26 H 0.116 0.884 27 H 0.080 0.920 28 H 0.083 0.917 29 H 0.157 0.843 30 H 0.149 0.851 31 H 0.064 0.936 32 H 0.074 0.926 33 H 0.120 0.880 34 H 0.104 0.896 35 H 0.040 0.960 36 H 0.112 0.888 37 H 0.085 0.915 38 H 0.072 0.928 39 H 0.076 0.924 40 H 0.034 0.966 41 H 0.070 0.930 42 H 0.031 0.969 43 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges -21.641 -0.460 6.658 22.646 hybrid contribution 0.720 -1.854 -0.882 2.176 sum -20.921 -2.314 5.776 21.826 Atomic orbital electron populations 1.21810 0.90058 1.04333 1.03906 1.23267 0.97338 0.79563 1.02166 1.86512 1.24097 1.33359 1.83720 1.24530 0.80479 0.93798 0.70921 1.90693 1.61343 1.44939 1.47065 1.21428 0.94394 0.89283 1.08469 1.22054 0.94148 0.99976 1.02059 1.22335 0.85792 0.94382 1.04387 1.62188 1.09475 1.52654 1.02482 1.22050 0.95079 0.97043 0.92195 1.21598 0.95340 1.00191 0.97849 1.21471 1.01534 0.96172 0.95211 1.18603 0.90428 0.94672 0.93060 0.98355 1.21563 0.92201 1.32149 1.11583 0.93385 1.25716 0.97183 0.96589 0.99030 1.70033 1.02190 1.44532 1.38707 0.85579 0.78263 0.78568 0.79685 1.19379 1.20301 1.20625 1.21949 0.96633 0.93966 0.92079 0.90912 0.91129 0.88433 0.92016 0.91670 0.84328 0.85128 0.93648 0.92553 0.87981 0.89623 0.95976 0.88778 0.91472 0.92786 0.92407 0.96551 0.93037 0.96893 0.92534 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.52 10.29 71.98 0.74 -0.78 16 2 C 0.05 0.89 6.19 71.98 0.45 1.33 16 3 O -0.36 -7.53 10.22 -51.35 -0.52 -8.05 16 4 C 0.46 11.20 7.96 71.24 0.57 11.76 16 5 O -0.55 -18.32 15.73 21.97 0.35 -17.97 16 6 C -0.10 -1.75 5.81 29.85 0.17 -1.58 16 7 C -0.14 -3.70 3.81 30.59 0.12 -3.59 16 8 C 0.06 1.47 5.36 86.31 0.46 1.93 16 9 N -0.55 -19.29 4.86 -896.36 -4.36 -23.64 16 10 C 0.06 2.16 5.05 86.33 0.44 2.60 16 11 C -0.11 -4.43 6.10 30.65 0.19 -4.24 16 12 C -0.11 -5.30 5.02 30.68 0.15 -5.15 16 13 C 0.05 2.70 2.27 -11.48 -0.03 2.68 16 14 H 0.00 -0.10 8.14 -2.39 -0.02 -0.12 16 15 C -0.54 -30.99 8.57 25.60 0.22 -30.77 16 16 H 0.05 2.75 7.75 -2.91 -0.02 2.72 16 17 C 0.01 0.77 5.30 84.66 0.45 1.22 16 18 N -0.92 -54.58 11.35 21.45 0.24 -54.34 16 19 Si 0.95 45.17 29.54 68.60 2.03 47.19 16 20 H -0.27 -12.45 7.11 99.48 0.71 -11.75 16 21 H -0.28 -12.76 7.11 99.48 0.71 -12.05 16 22 H -0.28 -13.01 7.11 99.48 0.71 -12.30 16 23 C 0.08 3.55 4.06 86.33 0.35 3.90 16 24 H 0.07 0.69 8.14 -2.39 -0.02 0.67 16 25 H 0.07 0.71 8.14 -2.39 -0.02 0.69 16 26 H 0.10 0.67 8.14 -2.39 -0.02 0.65 16 27 H 0.06 1.18 8.13 -2.39 -0.02 1.16 16 28 H 0.06 1.19 8.14 -2.38 -0.02 1.17 16 29 H 0.14 1.59 8.14 -2.39 -0.02 1.57 16 30 H 0.13 1.76 8.14 -2.38 -0.02 1.74 16 31 H 0.04 1.48 6.46 -2.39 -0.02 1.46 16 32 H 0.06 1.63 6.64 -2.39 -0.02 1.61 16 33 H 0.10 1.94 8.06 -2.39 -0.02 1.92 16 34 H 0.09 1.96 8.14 -2.38 -0.02 1.94 16 35 H 0.02 0.78 6.75 -2.39 -0.02 0.76 16 36 H 0.09 2.53 8.06 -2.38 -0.02 2.51 16 37 H 0.07 2.34 8.14 -2.39 -0.02 2.32 16 38 H 0.05 2.20 8.14 -2.39 -0.02 2.18 16 39 H 0.06 3.26 6.15 -2.39 -0.01 3.24 16 40 H 0.02 0.82 8.14 -2.39 -0.02 0.80 16 41 H 0.26 14.69 8.31 -92.71 -0.77 13.92 16 42 H 0.01 0.59 6.61 -2.39 -0.02 0.58 16 43 H 0.06 2.43 8.12 -2.39 -0.02 2.41 16 Total: -1.00 -70.64 339.39 2.97 -67.67 By element: Atomic # 1 Polarization: 8.85 SS G_CDS: 0.96 Total: 9.81 kcal Atomic # 6 Polarization: -24.95 SS G_CDS: 4.27 Total: -20.67 kcal Atomic # 7 Polarization: -73.87 SS G_CDS: -4.11 Total: -77.98 kcal Atomic # 8 Polarization: -25.84 SS G_CDS: -0.18 Total: -26.02 kcal Atomic # 14 Polarization: 45.17 SS G_CDS: 2.03 Total: 47.19 kcal Total: -70.64 2.97 -67.67 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000595614372.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -59.272 kcal (2) G-P(sol) polarization free energy of solvation -70.638 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -129.910 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.969 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.669 kcal (6) G-S(sol) free energy of system = (1) + (5) -126.941 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds