Wall clock time and date at job start Mon Mar 30 2020 00:45:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.09005 * 109.47248 * 2 1 4 4 C 1.50702 * 109.47217 * 119.99554 * 2 1 3 5 5 H 1.08007 * 119.99654 * 120.00019 * 4 2 1 6 6 C 1.37872 * 120.00125 * 300.00202 * 4 2 1 7 7 N 1.31512 * 120.00087 * 359.97438 * 6 4 2 8 8 Si 1.86807 * 119.99788 * 179.97438 * 6 4 2 9 9 H 1.48497 * 109.47256 * 359.97438 * 8 6 4 10 10 H 1.48499 * 109.46974 * 120.00222 * 8 6 4 11 11 H 1.48500 * 109.46671 * 239.99952 * 8 6 4 12 12 N 1.46501 * 109.47182 * 240.00038 * 2 1 3 13 13 C 1.46502 * 119.99603 * 300.00099 * 12 2 1 14 14 C 1.34777 * 120.00401 * 120.00229 * 12 2 1 15 15 O 1.21283 * 119.99611 * 359.97438 * 14 12 2 16 16 C 1.50690 * 120.00347 * 179.97438 * 14 12 2 17 17 H 1.09008 * 115.56062 * 34.29508 * 16 14 12 18 18 C 1.53000 * 117.50063 * 248.60878 * 16 14 12 19 19 C 1.53002 * 60.02940 * 252.49714 * 18 16 14 20 20 H 1.09000 * 117.49996 * 107.50493 * 19 18 16 21 21 O 1.42903 * 117.49524 * 252.51742 * 19 18 16 22 22 C 1.42904 * 113.99988 * 218.60969 * 21 19 18 23 23 C 1.52997 * 109.47120 * 60.00588 * 22 21 19 24 24 C 1.52998 * 109.47119 * 180.02562 * 22 21 19 25 25 C 1.53003 * 109.46853 * 300.00085 * 22 21 19 26 26 H 1.09000 * 109.47066 * 60.00055 * 1 2 3 27 27 H 1.09000 * 109.47022 * 180.02562 * 1 2 3 28 28 H 1.09001 * 109.47108 * 300.00554 * 1 2 3 29 29 H 0.97002 * 119.99675 * 179.97438 * 7 6 4 30 30 H 1.09006 * 109.46730 * 269.99598 * 13 12 2 31 31 H 1.08993 * 109.47368 * 30.00118 * 13 12 2 32 32 H 1.09002 * 109.46842 * 150.00271 * 13 12 2 33 33 H 1.09002 * 117.49833 * 359.97438 * 18 16 14 34 34 H 1.09002 * 117.49953 * 144.99860 * 18 16 14 35 35 H 1.08993 * 109.47231 * 59.99873 * 23 22 21 36 36 H 1.08995 * 109.47091 * 180.02562 * 23 22 21 37 37 H 1.09006 * 109.46651 * 299.99873 * 23 22 21 38 38 H 1.09006 * 109.47320 * 59.99641 * 24 22 21 39 39 H 1.08996 * 109.47274 * 179.97438 * 24 22 21 40 40 H 1.09003 * 109.47065 * 300.00096 * 24 22 21 41 41 H 1.08999 * 109.46694 * 60.00426 * 25 22 21 42 42 H 1.08999 * 109.46497 * 179.97438 * 25 22 21 43 43 H 1.08992 * 109.47346 * 299.99976 * 25 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0323 -0.7103 1.2305 5 1 2.6533 -1.5885 1.1314 6 6 1.6993 -0.2392 2.4827 7 7 0.9436 0.8303 2.6034 8 14 2.3214 -1.1202 4.0080 9 1 3.1455 -2.2876 3.6039 10 1 3.1466 -0.1872 4.8165 11 1 1.1661 -1.5865 4.8161 12 7 2.0183 -0.6906 -1.1962 13 6 1.6644 -2.0932 -1.4279 14 6 2.7932 -0.0357 -2.0834 15 8 3.0859 1.1256 -1.8916 16 6 3.2960 -0.7462 -3.3134 17 1 2.6177 -1.4853 -3.7400 18 6 4.7967 -1.0312 -3.4009 19 6 4.1717 0.0517 -4.2827 20 1 4.3841 1.0907 -4.0307 21 8 4.0373 -0.2293 -5.6774 22 6 4.3012 0.8912 -6.5242 23 6 5.7348 1.3753 -6.2974 24 6 4.1277 0.4771 -7.9868 25 6 3.3232 2.0207 -6.1949 26 1 -0.3633 0.5138 -0.8900 27 1 -0.3633 -1.0277 0.0005 28 1 -0.3633 0.5139 0.8899 29 1 0.7090 1.1615 3.4844 30 1 2.4157 -2.7377 -0.9716 31 1 0.6904 -2.3002 -0.9846 32 1 1.6238 -2.2852 -2.5001 33 1 5.4204 -0.7043 -2.5689 34 1 5.1057 -1.9578 -3.8847 35 1 6.4314 0.5706 -6.5319 36 1 5.9359 2.2302 -6.9429 37 1 5.8579 1.6704 -5.2553 38 1 3.1063 0.1323 -8.1481 39 1 4.3286 1.3318 -8.6327 40 1 4.8242 -0.3279 -8.2216 41 1 3.4465 2.3158 -5.1529 42 1 3.5248 2.8755 -6.8405 43 1 2.3020 1.6758 -6.3565 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000597144720.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:45:21 Heat of formation + Delta-G solvation = -58.223172 kcal Electronic energy + Delta-G solvation = -21438.439876 eV Core-core repulsion = 18291.899971 eV Total energy + Delta-G solvation = -3146.539904 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 269.178 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -39.76164 -38.62058 -35.89626 -34.99963 -32.85471 -32.44106 -29.44120 -27.62069 -27.43688 -26.09713 -25.22209 -24.03444 -22.22243 -20.54190 -19.92309 -18.22236 -17.15535 -16.40618 -16.04729 -15.51290 -15.12131 -14.92300 -14.40734 -14.24971 -13.67333 -13.27119 -13.06083 -12.65296 -12.60736 -12.44616 -12.27603 -12.09733 -11.94711 -11.88703 -11.83784 -11.54342 -11.38859 -11.06487 -10.88111 -10.80537 -10.72147 -10.59803 -10.24492 -10.19541 -10.15489 -9.23106 -9.09595 -8.84287 -8.41920 -7.55860 -6.06292 -4.14076 3.13965 3.26517 3.32517 3.35187 3.39302 3.98953 4.25707 4.41328 4.69856 4.73985 4.89703 4.98673 5.09586 5.21252 5.24978 5.33140 5.39879 5.44612 5.48218 5.59247 5.71272 5.73099 5.80857 5.83285 5.91516 5.98076 6.09692 6.14345 6.19454 6.22796 6.36670 6.77966 6.84224 7.07322 7.30793 7.45883 7.53865 7.73233 8.03015 8.21059 8.55822 8.85018 9.08089 9.52618 10.99070 Molecular weight = 269.18amu Principal moments of inertia in cm(-1) A = 0.034643 B = 0.003983 C = 0.003929 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 808.059060 B = 7028.387227 C = 7124.448685 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C 0.257 3.743 3 H 0.063 0.937 4 C -0.524 4.524 5 H 0.060 0.940 6 C 0.064 3.936 7 N -0.888 5.888 8 Si 0.898 3.102 9 H -0.273 1.273 10 H -0.283 1.283 11 H -0.283 1.283 12 N -0.587 5.587 13 C 0.087 3.913 14 C 0.533 3.467 15 O -0.557 6.557 16 C -0.188 4.188 17 H 0.124 0.876 18 C -0.157 4.157 19 C 0.048 3.952 20 H 0.125 0.875 21 O -0.346 6.346 22 C 0.108 3.892 23 C -0.177 4.177 24 C -0.136 4.136 25 C -0.180 4.180 26 H 0.011 0.989 27 H 0.030 0.970 28 H 0.094 0.906 29 H 0.262 0.738 30 H 0.049 0.951 31 H 0.071 0.929 32 H 0.054 0.946 33 H 0.105 0.895 34 H 0.104 0.896 35 H 0.063 0.937 36 H 0.064 0.936 37 H 0.063 0.937 38 H 0.063 0.937 39 H 0.070 0.930 40 H 0.062 0.938 41 H 0.067 0.933 42 H 0.064 0.936 43 H 0.064 0.936 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.303 -2.761 -17.195 18.204 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C 0.157 3.843 3 H 0.081 0.919 4 C -0.562 4.562 5 H 0.078 0.922 6 C -0.138 4.138 7 N -0.527 5.527 8 Si 0.726 3.274 9 H -0.198 1.198 10 H -0.209 1.209 11 H -0.209 1.209 12 N -0.317 5.317 13 C -0.056 4.056 14 C 0.320 3.680 15 O -0.437 6.437 16 C -0.209 4.209 17 H 0.142 0.858 18 C -0.195 4.195 19 C -0.010 4.010 20 H 0.142 0.858 21 O -0.265 6.265 22 C 0.069 3.931 23 C -0.234 4.234 24 C -0.194 4.194 25 C -0.238 4.238 26 H 0.030 0.970 27 H 0.049 0.951 28 H 0.112 0.888 29 H 0.072 0.928 30 H 0.068 0.932 31 H 0.090 0.910 32 H 0.072 0.928 33 H 0.123 0.877 34 H 0.123 0.877 35 H 0.082 0.918 36 H 0.083 0.917 37 H 0.082 0.918 38 H 0.082 0.918 39 H 0.089 0.911 40 H 0.081 0.919 41 H 0.086 0.914 42 H 0.083 0.917 43 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges 5.287 -2.221 -16.995 17.937 hybrid contribution 0.209 -0.469 1.066 1.183 sum 5.496 -2.690 -15.929 17.064 Atomic orbital electron populations 1.22097 0.98225 0.99396 1.00860 1.18964 0.90879 0.94526 0.79971 0.91899 1.21366 1.31673 1.12930 0.90264 0.92207 1.24899 0.94983 0.94991 0.98976 1.69893 1.36505 1.22663 1.23613 0.86438 0.78599 0.79594 0.82749 1.19805 1.20921 1.20944 1.48143 1.48557 1.11697 1.23296 1.21579 1.01446 0.83136 0.99485 1.19384 0.78965 0.86408 0.83235 1.90625 1.58980 1.17074 1.77007 1.22802 0.95671 1.04391 0.98048 0.85843 1.23377 0.93222 1.01064 1.01867 1.22552 1.01752 0.97106 0.79630 0.85760 1.87862 1.89525 1.34838 1.14260 1.21538 0.94105 0.86551 0.90947 1.22462 0.96450 1.01742 1.02780 1.21755 1.02862 1.01913 0.92833 1.22484 1.00038 0.98315 1.02914 0.96961 0.95065 0.88775 0.92766 0.93246 0.90983 0.92783 0.87695 0.87728 0.91785 0.91659 0.91794 0.91815 0.91130 0.91895 0.91411 0.91687 0.91713 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.58 8.95 37.16 0.33 -3.25 16 2 C 0.26 6.68 2.63 -69.08 -0.18 6.50 16 3 H 0.06 1.89 6.90 -51.93 -0.36 1.53 16 4 C -0.52 -14.34 8.37 -34.44 -0.29 -14.63 16 5 H 0.06 1.62 7.65 -52.48 -0.40 1.22 16 6 C 0.06 1.75 5.30 -17.82 -0.09 1.66 16 7 N -0.89 -25.33 11.32 55.43 0.63 -24.70 16 8 Si 0.90 21.19 29.54 -169.99 -5.02 16.17 16 9 H -0.27 -6.35 7.11 56.52 0.40 -5.95 16 10 H -0.28 -6.70 7.11 56.52 0.40 -6.30 16 11 H -0.28 -6.58 7.11 56.52 0.40 -6.18 16 12 N -0.59 -12.91 2.75 -175.26 -0.48 -13.39 16 13 C 0.09 1.53 9.51 59.85 0.57 2.10 16 14 C 0.53 11.41 7.46 -10.99 -0.08 11.33 16 15 O -0.56 -13.89 15.59 5.56 0.09 -13.80 16 16 C -0.19 -3.08 5.24 -91.74 -0.48 -3.56 16 17 H 0.12 1.83 6.44 -51.92 -0.33 1.49 16 18 C -0.16 -2.24 10.18 -26.73 -0.27 -2.51 16 19 C 0.05 0.72 4.48 -26.69 -0.12 0.60 16 20 H 0.13 1.97 5.16 -51.93 -0.27 1.70 16 21 O -0.35 -4.75 10.24 -35.23 -0.36 -5.11 16 22 C 0.11 1.19 1.11 -90.62 -0.10 1.09 16 23 C -0.18 -1.75 8.38 37.16 0.31 -1.43 16 24 C -0.14 -1.21 8.84 37.16 0.33 -0.88 16 25 C -0.18 -2.04 8.38 37.16 0.31 -1.73 16 26 H 0.01 0.26 8.14 -51.93 -0.42 -0.16 16 27 H 0.03 0.70 6.66 -51.93 -0.35 0.35 16 28 H 0.09 2.50 6.07 -51.93 -0.32 2.18 16 29 H 0.26 7.09 8.31 -40.82 -0.34 6.75 16 30 H 0.05 0.84 8.14 -51.93 -0.42 0.42 16 31 H 0.07 1.26 6.43 -51.93 -0.33 0.93 16 32 H 0.05 0.77 6.00 -51.93 -0.31 0.46 16 33 H 0.10 1.55 8.14 -51.93 -0.42 1.12 16 34 H 0.10 1.27 8.14 -51.93 -0.42 0.85 16 35 H 0.06 0.60 8.14 -51.93 -0.42 0.18 16 36 H 0.06 0.53 8.14 -51.93 -0.42 0.11 16 37 H 0.06 0.69 6.71 -51.93 -0.35 0.34 16 38 H 0.06 0.57 8.14 -51.93 -0.42 0.15 16 39 H 0.07 0.49 8.14 -51.93 -0.42 0.07 16 40 H 0.06 0.53 8.14 -51.93 -0.42 0.11 16 41 H 0.07 0.89 6.53 -51.93 -0.34 0.55 16 42 H 0.06 0.60 8.14 -51.93 -0.42 0.17 16 43 H 0.06 0.75 8.14 -51.93 -0.42 0.33 16 LS Contribution 342.00 15.07 5.15 5.15 Total: -1.00 -31.06 342.00 -6.90 -37.97 By element: Atomic # 1 Polarization: 9.57 SS G_CDS: -7.14 Total: 2.43 kcal Atomic # 6 Polarization: -4.96 SS G_CDS: 0.23 Total: -4.72 kcal Atomic # 7 Polarization: -38.23 SS G_CDS: 0.15 Total: -38.09 kcal Atomic # 8 Polarization: -18.64 SS G_CDS: -0.27 Total: -18.91 kcal Atomic # 14 Polarization: 21.19 SS G_CDS: -5.02 Total: 16.17 kcal Total LS contribution 5.15 Total: 5.15 kcal Total: -31.06 -6.90 -37.97 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000597144720.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -20.254 kcal (2) G-P(sol) polarization free energy of solvation -31.065 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -51.319 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.904 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.969 kcal (6) G-S(sol) free energy of system = (1) + (5) -58.223 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds