Wall clock time and date at job start Mon Mar 30 2020 00:45:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.09005 * 109.47248 * 2 1 4 4 C 1.50702 * 109.47217 * 119.99554 * 2 1 3 5 5 H 1.08007 * 119.99654 * 120.00019 * 4 2 1 6 6 C 1.37872 * 120.00125 * 300.00202 * 4 2 1 7 7 N 1.31512 * 120.00087 * 359.97438 * 6 4 2 8 8 Si 1.86807 * 119.99788 * 179.97438 * 6 4 2 9 9 H 1.48497 * 109.47256 * 359.97438 * 8 6 4 10 10 H 1.48499 * 109.46974 * 120.00222 * 8 6 4 11 11 H 1.48500 * 109.46671 * 239.99952 * 8 6 4 12 12 N 1.46501 * 109.47182 * 240.00038 * 2 1 3 13 13 C 1.46502 * 119.99603 * 300.00099 * 12 2 1 14 14 C 1.34777 * 120.00401 * 120.00229 * 12 2 1 15 15 O 1.21283 * 119.99611 * 359.97438 * 14 12 2 16 16 C 1.50690 * 120.00347 * 179.97438 * 14 12 2 17 17 H 1.09008 * 115.56062 * 34.29508 * 16 14 12 18 18 C 1.53000 * 117.50063 * 248.60878 * 16 14 12 19 19 C 1.53002 * 60.02940 * 252.49714 * 18 16 14 20 20 H 1.09000 * 117.49996 * 107.50493 * 19 18 16 21 21 O 1.42903 * 117.49524 * 252.51742 * 19 18 16 22 22 C 1.42904 * 113.99988 * 218.60969 * 21 19 18 23 23 C 1.52997 * 109.47120 * 60.00588 * 22 21 19 24 24 C 1.52998 * 109.47119 * 180.02562 * 22 21 19 25 25 C 1.53003 * 109.46853 * 300.00085 * 22 21 19 26 26 H 1.09000 * 109.47066 * 60.00055 * 1 2 3 27 27 H 1.09000 * 109.47022 * 180.02562 * 1 2 3 28 28 H 1.09001 * 109.47108 * 300.00554 * 1 2 3 29 29 H 0.97002 * 119.99675 * 179.97438 * 7 6 4 30 30 H 1.09006 * 109.46730 * 269.99598 * 13 12 2 31 31 H 1.08993 * 109.47368 * 30.00118 * 13 12 2 32 32 H 1.09002 * 109.46842 * 150.00271 * 13 12 2 33 33 H 1.09002 * 117.49833 * 359.97438 * 18 16 14 34 34 H 1.09002 * 117.49953 * 144.99860 * 18 16 14 35 35 H 1.08993 * 109.47231 * 59.99873 * 23 22 21 36 36 H 1.08995 * 109.47091 * 180.02562 * 23 22 21 37 37 H 1.09006 * 109.46651 * 299.99873 * 23 22 21 38 38 H 1.09006 * 109.47320 * 59.99641 * 24 22 21 39 39 H 1.08996 * 109.47274 * 179.97438 * 24 22 21 40 40 H 1.09003 * 109.47065 * 300.00096 * 24 22 21 41 41 H 1.08999 * 109.46694 * 60.00426 * 25 22 21 42 42 H 1.08999 * 109.46497 * 179.97438 * 25 22 21 43 43 H 1.08992 * 109.47346 * 299.99976 * 25 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0323 -0.7103 1.2305 5 1 2.6533 -1.5885 1.1314 6 6 1.6993 -0.2392 2.4827 7 7 0.9436 0.8303 2.6034 8 14 2.3214 -1.1202 4.0080 9 1 3.1455 -2.2876 3.6039 10 1 3.1466 -0.1872 4.8165 11 1 1.1661 -1.5865 4.8161 12 7 2.0183 -0.6906 -1.1962 13 6 1.6644 -2.0932 -1.4279 14 6 2.7932 -0.0357 -2.0834 15 8 3.0859 1.1256 -1.8916 16 6 3.2960 -0.7462 -3.3134 17 1 2.6177 -1.4853 -3.7400 18 6 4.7967 -1.0312 -3.4009 19 6 4.1717 0.0517 -4.2827 20 1 4.3841 1.0907 -4.0307 21 8 4.0373 -0.2293 -5.6774 22 6 4.3012 0.8912 -6.5242 23 6 5.7348 1.3753 -6.2974 24 6 4.1277 0.4771 -7.9868 25 6 3.3232 2.0207 -6.1949 26 1 -0.3633 0.5138 -0.8900 27 1 -0.3633 -1.0277 0.0005 28 1 -0.3633 0.5139 0.8899 29 1 0.7090 1.1615 3.4844 30 1 2.4157 -2.7377 -0.9716 31 1 0.6904 -2.3002 -0.9846 32 1 1.6238 -2.2852 -2.5001 33 1 5.4204 -0.7043 -2.5689 34 1 5.1057 -1.9578 -3.8847 35 1 6.4314 0.5706 -6.5319 36 1 5.9359 2.2302 -6.9429 37 1 5.8579 1.6704 -5.2553 38 1 3.1063 0.1323 -8.1481 39 1 4.3286 1.3318 -8.6327 40 1 4.8242 -0.3279 -8.2216 41 1 3.4465 2.3158 -5.1529 42 1 3.5248 2.8755 -6.8405 43 1 2.3020 1.6758 -6.3565 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000597144720.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:45:20 Heat of formation + Delta-G solvation = -77.045076 kcal Electronic energy + Delta-G solvation = -21439.256055 eV Core-core repulsion = 18291.899971 eV Total energy + Delta-G solvation = -3147.356083 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 269.178 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -41.17980 -39.88350 -37.42041 -36.52494 -34.78198 -33.51165 -31.39004 -28.37562 -28.27743 -27.64677 -27.31198 -25.58839 -23.31165 -22.30695 -20.92190 -19.82231 -18.65438 -18.22059 -17.50177 -16.95520 -16.66016 -16.12549 -15.88973 -15.75438 -14.98390 -14.49527 -14.46388 -14.14873 -13.96970 -13.65943 -13.51596 -13.30746 -13.06347 -13.02226 -12.95331 -12.81911 -12.76646 -12.71586 -12.63791 -12.59991 -12.20394 -12.11892 -11.79727 -11.66025 -11.35025 -11.19020 -10.72208 -10.51260 -10.14866 -9.35131 -8.15817 -6.32622 1.40303 1.41669 1.53260 1.60592 2.08141 2.40442 2.65021 2.91388 3.12085 3.67455 3.75301 3.87898 3.96142 4.01246 4.06734 4.16130 4.32496 4.51010 4.63022 4.65208 4.70533 4.76672 4.80461 4.81543 4.85722 4.92768 4.93479 4.95589 5.01984 5.05076 5.05822 5.17977 5.32844 5.40080 5.44208 5.60606 5.65840 6.01230 6.14465 6.27594 6.75180 6.80254 7.29184 7.45522 8.88886 Molecular weight = 269.18amu Principal moments of inertia in cm(-1) A = 0.034643 B = 0.003983 C = 0.003929 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 808.059060 B = 7028.387227 C = 7124.448685 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C 0.260 3.740 3 H 0.009 0.991 4 C -0.538 4.538 5 H 0.060 0.940 6 C 0.014 3.986 7 N -0.918 5.918 8 Si 0.967 3.033 9 H -0.265 1.265 10 H -0.285 1.285 11 H -0.274 1.274 12 N -0.595 5.595 13 C 0.084 3.916 14 C 0.524 3.476 15 O -0.606 6.606 16 C -0.194 4.194 17 H 0.147 0.853 18 C -0.138 4.138 19 C 0.056 3.944 20 H 0.108 0.892 21 O -0.351 6.351 22 C 0.097 3.903 23 C -0.174 4.174 24 C -0.132 4.132 25 C -0.179 4.179 26 H 0.019 0.981 27 H 0.049 0.951 28 H 0.069 0.931 29 H 0.265 0.735 30 H 0.056 0.944 31 H 0.071 0.929 32 H 0.092 0.908 33 H 0.096 0.904 34 H 0.135 0.865 35 H 0.070 0.930 36 H 0.084 0.916 37 H 0.047 0.953 38 H 0.060 0.940 39 H 0.092 0.908 40 H 0.068 0.932 41 H 0.040 0.960 42 H 0.087 0.913 43 H 0.057 0.943 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.081 -4.802 -18.713 20.254 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C 0.158 3.842 3 H 0.027 0.973 4 C -0.576 4.576 5 H 0.078 0.922 6 C -0.185 4.185 7 N -0.557 5.557 8 Si 0.792 3.208 9 H -0.189 1.189 10 H -0.211 1.211 11 H -0.199 1.199 12 N -0.324 5.324 13 C -0.058 4.058 14 C 0.313 3.687 15 O -0.489 6.489 16 C -0.216 4.216 17 H 0.165 0.835 18 C -0.176 4.176 19 C -0.003 4.003 20 H 0.125 0.875 21 O -0.270 6.270 22 C 0.059 3.941 23 C -0.232 4.232 24 C -0.189 4.189 25 C -0.236 4.236 26 H 0.038 0.962 27 H 0.068 0.932 28 H 0.088 0.912 29 H 0.074 0.926 30 H 0.074 0.926 31 H 0.090 0.910 32 H 0.110 0.890 33 H 0.114 0.886 34 H 0.154 0.846 35 H 0.089 0.911 36 H 0.103 0.897 37 H 0.066 0.934 38 H 0.079 0.921 39 H 0.111 0.889 40 H 0.087 0.913 41 H 0.060 0.940 42 H 0.106 0.894 43 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges 6.060 -4.300 -18.542 19.975 hybrid contribution -0.030 0.242 1.475 1.495 sum 6.030 -4.057 -17.067 18.550 Atomic orbital electron populations 1.21888 0.97116 1.00213 0.99963 1.18576 0.91687 0.92221 0.81724 0.97339 1.21593 1.31896 1.13015 0.91099 0.92158 1.25756 0.95058 0.95644 1.02069 1.70032 1.37359 1.23916 1.24398 0.85379 0.78238 0.78476 0.78751 1.18887 1.21066 1.19916 1.48163 1.48639 1.13423 1.22198 1.21820 1.01470 0.80356 1.02136 1.20247 0.78090 0.86047 0.84322 1.90594 1.60566 1.19407 1.78311 1.22700 0.97319 1.05264 0.96270 0.83534 1.23462 0.91041 1.01934 1.01146 1.22354 1.00935 0.96524 0.80503 0.87476 1.87851 1.89657 1.36041 1.13409 1.21854 0.94602 0.85834 0.91805 1.22444 0.95755 1.02738 1.02240 1.21769 1.02905 1.03066 0.91169 1.22483 0.99916 0.99485 1.01746 0.96221 0.93220 0.91249 0.92613 0.92551 0.91043 0.88994 0.88605 0.84648 0.91096 0.89685 0.93422 0.92095 0.88941 0.91298 0.94048 0.89434 0.92378 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -6.61 8.95 71.98 0.64 -5.97 16 2 C 0.26 13.95 2.63 44.25 0.12 14.07 16 3 H 0.01 0.55 6.90 -2.38 -0.02 0.54 16 4 C -0.54 -29.83 8.37 25.60 0.21 -29.62 16 5 H 0.06 3.26 7.65 -2.91 -0.02 3.24 16 6 C 0.01 0.79 5.30 84.65 0.45 1.24 16 7 N -0.92 -53.60 11.32 21.45 0.24 -53.36 16 8 Si 0.97 43.50 29.54 68.60 2.03 45.52 16 9 H -0.26 -11.44 7.11 99.48 0.71 -10.74 16 10 H -0.28 -12.80 7.11 99.48 0.71 -12.10 16 11 H -0.27 -11.84 7.11 99.48 0.71 -11.13 16 12 N -0.60 -26.31 2.75 -826.79 -2.28 -28.59 16 13 C 0.08 2.80 9.51 127.77 1.21 4.01 16 14 C 0.52 22.79 7.46 87.65 0.65 23.45 16 15 O -0.61 -31.81 15.59 -3.04 -0.05 -31.85 16 16 C -0.19 -6.14 5.24 -11.52 -0.06 -6.20 16 17 H 0.15 3.90 6.44 -2.38 -0.02 3.89 16 18 C -0.14 -3.67 10.18 30.60 0.31 -3.36 16 19 C 0.06 1.62 4.48 30.62 0.14 1.76 16 20 H 0.11 3.52 5.16 -2.39 -0.01 3.51 16 21 O -0.35 -9.01 10.24 -148.98 -1.53 -10.53 16 22 C 0.10 2.00 1.11 -10.79 -0.01 1.99 16 23 C -0.17 -3.15 8.38 71.98 0.60 -2.55 16 24 C -0.13 -1.98 8.84 71.98 0.64 -1.34 16 25 C -0.18 -3.94 8.38 71.98 0.60 -3.34 16 26 H 0.02 0.89 8.14 -2.39 -0.02 0.87 16 27 H 0.05 2.22 6.66 -2.39 -0.02 2.20 16 28 H 0.07 3.79 6.07 -2.39 -0.01 3.78 16 29 H 0.26 14.56 8.31 -92.71 -0.77 13.79 16 30 H 0.06 1.79 8.14 -2.38 -0.02 1.77 16 31 H 0.07 2.37 6.43 -2.39 -0.02 2.35 16 32 H 0.09 2.33 6.00 -2.39 -0.01 2.31 16 33 H 0.10 2.75 8.14 -2.39 -0.02 2.73 16 34 H 0.14 2.79 8.14 -2.39 -0.02 2.77 16 35 H 0.07 1.18 8.14 -2.39 -0.02 1.16 16 36 H 0.08 1.18 8.14 -2.39 -0.02 1.16 16 37 H 0.05 1.01 6.71 -2.38 -0.02 1.00 16 38 H 0.06 0.95 8.14 -2.38 -0.02 0.93 16 39 H 0.09 0.98 8.14 -2.39 -0.02 0.96 16 40 H 0.07 0.96 8.14 -2.39 -0.02 0.94 16 41 H 0.04 1.12 6.53 -2.39 -0.02 1.11 16 42 H 0.09 1.48 8.14 -2.39 -0.02 1.46 16 43 H 0.06 1.33 8.14 -2.39 -0.02 1.31 16 Total: -1.00 -69.77 342.00 4.91 -64.87 By element: Atomic # 1 Polarization: 18.84 SS G_CDS: 0.98 Total: 19.81 kcal Atomic # 6 Polarization: -11.38 SS G_CDS: 5.51 Total: -5.87 kcal Atomic # 7 Polarization: -79.91 SS G_CDS: -2.03 Total: -81.95 kcal Atomic # 8 Polarization: -40.81 SS G_CDS: -1.57 Total: -42.39 kcal Atomic # 14 Polarization: 43.50 SS G_CDS: 2.03 Total: 45.52 kcal Total: -69.77 4.91 -64.87 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000597144720.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -12.180 kcal (2) G-P(sol) polarization free energy of solvation -69.775 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -81.955 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.910 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.865 kcal (6) G-S(sol) free energy of system = (1) + (5) -77.045 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds