Wall clock time and date at job start Mon Mar 30 2020 01:22:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 O 1.42897 * 109.46815 * 2 1 4 4 C 1.42901 * 113.99986 * 179.97438 * 3 2 1 5 5 H 1.08999 * 109.46392 * 30.02093 * 4 3 2 6 6 C 1.53047 * 109.44719 * 270.06082 * 4 3 2 7 7 C 1.53624 * 109.23940 * 178.49617 * 6 4 3 8 8 N 1.46932 * 108.54385 * 54.85594 * 7 6 4 9 9 C 1.34778 * 120.63076 * 126.36608 * 8 7 6 10 10 O 1.21281 * 119.99939 * 5.04519 * 9 8 7 11 11 C 1.50695 * 120.00252 * 185.04744 * 9 8 7 12 12 H 1.08998 * 109.47162 * 32.74781 * 11 9 8 13 13 C 1.53000 * 109.46994 * 272.75332 * 11 9 8 14 14 C 1.50697 * 109.47550 * 152.74966 * 11 9 8 15 15 H 1.08004 * 119.99619 * 0.02562 * 14 11 9 16 16 C 1.37878 * 120.00051 * 179.97438 * 14 11 9 17 17 N 1.31514 * 120.00036 * 0.02562 * 16 14 11 18 18 Si 1.86798 * 119.99822 * 180.02562 * 16 14 11 19 19 H 1.48497 * 109.47226 * 90.00314 * 18 16 14 20 20 H 1.48497 * 109.47103 * 210.00465 * 18 16 14 21 21 H 1.48503 * 109.47203 * 330.00387 * 18 16 14 22 22 C 1.46925 * 118.73712 * 306.09206 * 8 7 6 23 23 C 1.53041 * 109.46231 * 149.99913 * 4 3 2 24 24 H 1.09003 * 109.49508 * 301.32609 * 23 4 3 25 25 C 1.53006 * 109.49745 * 61.42038 * 23 4 3 26 26 H 1.08998 * 109.47273 * 60.00315 * 1 2 3 27 27 H 1.09009 * 109.46550 * 179.97438 * 1 2 3 28 28 H 1.09001 * 109.47535 * 299.99831 * 1 2 3 29 29 H 1.08992 * 109.47560 * 239.99887 * 2 1 3 30 30 H 1.09005 * 109.47003 * 119.99427 * 2 1 3 31 31 H 1.09001 * 109.49560 * 298.56651 * 6 4 3 32 32 H 1.08990 * 109.49876 * 58.63634 * 6 4 3 33 33 H 1.08993 * 109.74240 * 295.11821 * 7 6 4 34 34 H 1.09000 * 109.66561 * 174.54669 * 7 6 4 35 35 H 1.08996 * 109.47088 * 296.53500 * 13 11 9 36 36 H 1.09002 * 109.47409 * 56.53727 * 13 11 9 37 37 H 1.09003 * 109.47442 * 176.53509 * 13 11 9 38 38 H 0.97001 * 119.99766 * 179.97438 * 17 16 14 39 39 H 1.08998 * 109.58228 * 173.64523 * 22 8 7 40 40 H 1.08989 * 109.58723 * 294.07191 * 22 8 7 41 41 H 1.09000 * 109.46658 * 179.84000 * 25 23 4 42 42 H 1.08999 * 109.46812 * 299.84148 * 25 23 4 43 43 H 1.08993 * 109.47202 * 59.83638 * 25 23 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0062 1.3473 0.0000 4 6 3.4308 1.4602 0.0006 5 1 3.8634 0.6018 -0.5133 6 6 3.9383 1.4991 1.4439 7 6 5.4722 1.5825 1.4391 8 7 5.8748 2.7389 0.6269 9 6 6.6968 3.6800 1.1319 10 8 7.1845 3.5319 2.2324 11 6 7.0100 4.9163 0.3292 12 1 6.1444 5.1854 -0.2761 13 6 8.2058 4.6415 -0.5848 14 6 7.3421 6.0512 1.2634 15 1 7.3282 5.8928 2.3317 16 6 7.6647 7.2912 0.7544 17 7 7.6821 7.4839 -0.5465 18 14 8.0771 8.6977 1.9124 19 1 9.5371 8.7043 2.1831 20 1 7.6839 9.9857 1.2866 21 1 7.3379 8.5214 3.1883 22 6 5.3691 2.8465 -0.7484 23 6 3.8407 2.7461 -0.7209 24 1 3.4588 2.7280 -1.7417 25 6 3.2628 3.9537 0.0198 26 1 -0.3634 0.5138 -0.8900 27 1 -0.3633 -1.0278 -0.0005 28 1 -0.3634 0.5138 0.8900 29 1 1.8934 -0.5138 -0.8899 30 1 1.8933 -0.5138 0.8901 31 1 3.5257 2.3712 1.9512 32 1 3.6255 0.5939 1.9641 33 1 5.8891 0.6716 1.0098 34 1 5.8360 1.7080 2.4590 35 1 9.0867 4.4325 0.0222 36 1 7.9889 3.7815 -1.2185 37 1 8.3939 5.5147 -1.2096 38 1 7.9087 8.3564 -0.9046 39 1 5.6646 3.8062 -1.1722 40 1 5.7777 2.0365 -1.3524 41 1 3.5573 4.8694 -0.4929 42 1 2.1753 3.8817 0.0391 43 1 3.6439 3.9702 1.0408 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000597722364.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:22:45 Heat of formation + Delta-G solvation = -95.672656 kcal Electronic energy + Delta-G solvation = -22069.279731 eV Core-core repulsion = 18921.115895 eV Total energy + Delta-G solvation = -3148.163836 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 269.178 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -40.01533 -38.28076 -36.23447 -33.82782 -32.65350 -31.76549 -30.79440 -29.85823 -26.55713 -25.16316 -24.75051 -23.36313 -22.64100 -21.71752 -19.55004 -18.23069 -16.85826 -16.34395 -15.99237 -15.71329 -15.24611 -14.86635 -14.68679 -14.32988 -13.78661 -13.58973 -13.05667 -12.97724 -12.64142 -12.56455 -12.29393 -11.97645 -11.91144 -11.63561 -11.40941 -11.30738 -11.10843 -10.99465 -10.93431 -10.64322 -10.61814 -10.48978 -10.29282 -10.21384 -9.99385 -9.43500 -8.95876 -8.56064 -8.27069 -8.05415 -6.02573 -4.05203 3.34608 3.40223 3.45701 3.52825 3.66733 3.79791 4.47623 4.75113 4.79674 4.91240 5.00736 5.15111 5.18112 5.21488 5.29864 5.33683 5.39094 5.56637 5.68555 5.71447 5.74380 5.85807 5.89975 5.93327 5.99078 6.05490 6.25578 6.28319 6.36254 6.42555 6.66341 6.73150 6.87192 7.00374 7.12652 7.22610 7.46995 7.77700 7.98809 8.11366 8.39819 8.99980 9.23895 9.59437 11.05087 Molecular weight = 269.18amu Principal moments of inertia in cm(-1) A = 0.030317 B = 0.004669 C = 0.004527 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 923.365059 B = 5996.173928 C = 6183.729121 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C 0.056 3.944 3 O -0.379 6.379 4 C 0.099 3.901 5 H 0.057 0.943 6 C -0.156 4.156 7 C 0.114 3.886 8 N -0.625 5.625 9 C 0.525 3.475 10 O -0.549 6.549 11 C 0.031 3.969 12 H 0.050 0.950 13 C -0.130 4.130 14 C -0.499 4.499 15 H 0.068 0.932 16 C 0.060 3.940 17 N -0.895 5.895 18 Si 0.899 3.101 19 H -0.280 1.280 20 H -0.287 1.287 21 H -0.273 1.273 22 C 0.114 3.886 23 C -0.101 4.101 24 H 0.082 0.918 25 C -0.141 4.141 26 H 0.062 0.938 27 H 0.067 0.933 28 H 0.062 0.938 29 H 0.045 0.955 30 H 0.045 0.955 31 H 0.080 0.920 32 H 0.066 0.934 33 H 0.055 0.945 34 H 0.091 0.909 35 H 0.034 0.966 36 H 0.011 0.989 37 H 0.092 0.908 38 H 0.261 0.739 39 H 0.106 0.894 40 H 0.059 0.941 41 H 0.059 0.941 42 H 0.056 0.944 43 H 0.060 0.940 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.100 -13.916 -3.231 18.092 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.021 4.021 3 O -0.299 6.299 4 C 0.041 3.959 5 H 0.075 0.925 6 C -0.194 4.194 7 C -0.010 4.010 8 N -0.361 5.361 9 C 0.317 3.683 10 O -0.425 6.425 11 C 0.010 3.990 12 H 0.068 0.932 13 C -0.188 4.188 14 C -0.537 4.537 15 H 0.086 0.914 16 C -0.140 4.140 17 N -0.534 5.534 18 Si 0.727 3.273 19 H -0.206 1.206 20 H -0.213 1.213 21 H -0.198 1.198 22 C -0.010 4.010 23 C -0.120 4.120 24 H 0.101 0.899 25 C -0.198 4.198 26 H 0.081 0.919 27 H 0.086 0.914 28 H 0.081 0.919 29 H 0.063 0.937 30 H 0.063 0.937 31 H 0.098 0.902 32 H 0.085 0.915 33 H 0.074 0.926 34 H 0.109 0.891 35 H 0.053 0.947 36 H 0.030 0.970 37 H 0.110 0.890 38 H 0.071 0.929 39 H 0.124 0.876 40 H 0.078 0.922 41 H 0.078 0.922 42 H 0.075 0.925 43 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges -10.905 -13.672 -2.746 17.702 hybrid contribution 0.311 0.374 0.495 0.694 sum -10.593 -13.298 -2.250 17.150 Atomic orbital electron populations 1.21734 0.94007 1.01925 1.03107 1.22459 0.95391 0.84479 0.99734 1.87945 1.21218 1.25653 1.95047 1.22085 0.80572 0.97791 0.95466 0.92476 1.22533 0.96467 1.02992 0.97439 1.21442 0.92829 0.88763 0.97920 1.48342 1.49860 1.24028 1.13873 1.22024 0.75506 0.83891 0.86836 1.90518 1.51535 1.78436 1.21980 1.18898 0.96514 0.88819 0.94732 0.93243 1.21716 0.97938 1.00227 0.98929 1.21061 1.46189 0.93134 0.93356 0.91402 1.24915 0.95314 0.98591 0.95213 1.69869 1.49358 1.23349 1.10865 0.86472 0.78756 0.81126 0.80988 1.20640 1.21268 1.19820 1.21796 0.91771 1.03840 0.83589 1.21600 0.95804 0.94700 0.99903 0.89944 1.21750 1.00375 0.96634 1.01062 0.91917 0.91424 0.91899 0.93685 0.93666 0.90151 0.91516 0.92624 0.89111 0.94689 0.97003 0.88956 0.92948 0.87593 0.92245 0.92175 0.92510 0.92113 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.22 10.28 37.16 0.38 -0.84 16 2 C 0.06 0.54 6.47 37.16 0.24 0.78 16 3 O -0.38 -4.76 9.38 -35.23 -0.33 -5.10 16 4 C 0.10 1.23 2.25 -26.69 -0.06 1.17 16 5 H 0.06 0.64 7.79 -51.93 -0.40 0.24 16 6 C -0.16 -2.07 5.37 -26.38 -0.14 -2.21 16 7 C 0.11 1.75 6.45 -3.48 -0.02 1.73 16 8 N -0.63 -11.34 2.41 -172.51 -0.41 -11.76 16 9 C 0.53 12.21 6.77 -10.99 -0.07 12.13 16 10 O -0.55 -14.53 15.31 5.56 0.09 -14.44 16 11 C 0.03 0.78 1.78 -92.93 -0.17 0.61 16 12 H 0.05 1.24 6.37 -51.93 -0.33 0.90 16 13 C -0.13 -3.07 8.74 37.16 0.32 -2.75 16 14 C -0.50 -14.18 8.33 -34.44 -0.29 -14.46 16 15 H 0.07 2.04 7.08 -52.48 -0.37 1.67 16 16 C 0.06 1.68 5.30 -17.82 -0.09 1.58 16 17 N -0.90 -24.94 11.35 55.43 0.63 -24.31 16 18 Si 0.90 21.85 29.54 -169.99 -5.02 16.83 16 19 H -0.28 -6.79 7.11 56.52 0.40 -6.39 16 20 H -0.29 -6.82 7.11 56.52 0.40 -6.41 16 21 H -0.27 -6.67 7.11 56.52 0.40 -6.27 16 22 C 0.11 1.73 5.37 -3.71 -0.02 1.71 16 23 C -0.10 -1.37 2.94 -90.50 -0.27 -1.64 16 24 H 0.08 1.01 8.14 -51.93 -0.42 0.59 16 25 C -0.14 -2.17 8.57 37.16 0.32 -1.85 16 26 H 0.06 0.52 8.14 -51.93 -0.42 0.10 16 27 H 0.07 0.42 8.14 -51.92 -0.42 -0.01 16 28 H 0.06 0.54 8.14 -51.93 -0.42 0.11 16 29 H 0.04 0.39 8.08 -51.93 -0.42 -0.03 16 30 H 0.05 0.40 7.84 -51.93 -0.41 0.00 16 31 H 0.08 1.22 6.33 -51.93 -0.33 0.89 16 32 H 0.07 0.76 7.84 -51.93 -0.41 0.35 16 33 H 0.06 0.75 8.14 -51.93 -0.42 0.32 16 34 H 0.09 1.56 7.04 -51.93 -0.37 1.20 16 35 H 0.03 0.85 8.14 -51.93 -0.42 0.43 16 36 H 0.01 0.23 7.65 -51.93 -0.40 -0.17 16 37 H 0.09 2.34 6.17 -51.93 -0.32 2.02 16 38 H 0.26 6.95 8.31 -40.82 -0.34 6.61 16 39 H 0.11 1.79 5.20 -51.93 -0.27 1.52 16 40 H 0.06 0.78 8.14 -51.94 -0.42 0.36 16 41 H 0.06 0.97 8.14 -51.93 -0.42 0.54 16 42 H 0.06 0.82 7.73 -51.93 -0.40 0.42 16 43 H 0.06 1.05 5.97 -51.93 -0.31 0.74 16 LS Contribution 332.44 15.07 5.01 5.01 Total: -1.00 -30.92 332.44 -7.16 -38.08 By element: Atomic # 1 Polarization: 6.98 SS G_CDS: -7.25 Total: -0.27 kcal Atomic # 6 Polarization: -4.17 SS G_CDS: 0.13 Total: -4.03 kcal Atomic # 7 Polarization: -36.28 SS G_CDS: 0.21 Total: -36.07 kcal Atomic # 8 Polarization: -19.29 SS G_CDS: -0.25 Total: -19.54 kcal Atomic # 14 Polarization: 21.85 SS G_CDS: -5.02 Total: 16.83 kcal Total LS contribution 5.01 Total: 5.01 kcal Total: -30.92 -7.16 -38.08 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000597722364.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -57.597 kcal (2) G-P(sol) polarization free energy of solvation -30.917 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -88.514 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.158 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.075 kcal (6) G-S(sol) free energy of system = (1) + (5) -95.673 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds