Wall clock time and date at job start Mon Mar 30 2020 01:22:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 O 1.42897 * 109.46815 * 2 1 4 4 C 1.42901 * 113.99986 * 179.97438 * 3 2 1 5 5 H 1.08999 * 109.46392 * 30.02093 * 4 3 2 6 6 C 1.53047 * 109.44719 * 270.06082 * 4 3 2 7 7 C 1.53624 * 109.23940 * 178.49617 * 6 4 3 8 8 N 1.46932 * 108.54385 * 54.85594 * 7 6 4 9 9 C 1.34778 * 120.63076 * 126.36608 * 8 7 6 10 10 O 1.21281 * 119.99939 * 5.04519 * 9 8 7 11 11 C 1.50695 * 120.00252 * 185.04744 * 9 8 7 12 12 H 1.08998 * 109.47162 * 32.74781 * 11 9 8 13 13 C 1.53000 * 109.46994 * 272.75332 * 11 9 8 14 14 C 1.50697 * 109.47550 * 152.74966 * 11 9 8 15 15 H 1.08004 * 119.99619 * 0.02562 * 14 11 9 16 16 C 1.37878 * 120.00051 * 179.97438 * 14 11 9 17 17 N 1.31514 * 120.00036 * 0.02562 * 16 14 11 18 18 Si 1.86798 * 119.99822 * 180.02562 * 16 14 11 19 19 H 1.48497 * 109.47226 * 90.00314 * 18 16 14 20 20 H 1.48497 * 109.47103 * 210.00465 * 18 16 14 21 21 H 1.48503 * 109.47203 * 330.00387 * 18 16 14 22 22 C 1.46925 * 118.73712 * 306.09206 * 8 7 6 23 23 C 1.53041 * 109.46231 * 149.99913 * 4 3 2 24 24 H 1.09003 * 109.49508 * 301.32609 * 23 4 3 25 25 C 1.53006 * 109.49745 * 61.42038 * 23 4 3 26 26 H 1.08998 * 109.47273 * 60.00315 * 1 2 3 27 27 H 1.09009 * 109.46550 * 179.97438 * 1 2 3 28 28 H 1.09001 * 109.47535 * 299.99831 * 1 2 3 29 29 H 1.08992 * 109.47560 * 239.99887 * 2 1 3 30 30 H 1.09005 * 109.47003 * 119.99427 * 2 1 3 31 31 H 1.09001 * 109.49560 * 298.56651 * 6 4 3 32 32 H 1.08990 * 109.49876 * 58.63634 * 6 4 3 33 33 H 1.08993 * 109.74240 * 295.11821 * 7 6 4 34 34 H 1.09000 * 109.66561 * 174.54669 * 7 6 4 35 35 H 1.08996 * 109.47088 * 296.53500 * 13 11 9 36 36 H 1.09002 * 109.47409 * 56.53727 * 13 11 9 37 37 H 1.09003 * 109.47442 * 176.53509 * 13 11 9 38 38 H 0.97001 * 119.99766 * 179.97438 * 17 16 14 39 39 H 1.08998 * 109.58228 * 173.64523 * 22 8 7 40 40 H 1.08989 * 109.58723 * 294.07191 * 22 8 7 41 41 H 1.09000 * 109.46658 * 179.84000 * 25 23 4 42 42 H 1.08999 * 109.46812 * 299.84148 * 25 23 4 43 43 H 1.08993 * 109.47202 * 59.83638 * 25 23 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0062 1.3473 0.0000 4 6 3.4308 1.4602 0.0006 5 1 3.8634 0.6018 -0.5133 6 6 3.9383 1.4991 1.4439 7 6 5.4722 1.5825 1.4391 8 7 5.8748 2.7389 0.6269 9 6 6.6968 3.6800 1.1319 10 8 7.1845 3.5319 2.2324 11 6 7.0100 4.9163 0.3292 12 1 6.1444 5.1854 -0.2761 13 6 8.2058 4.6415 -0.5848 14 6 7.3421 6.0512 1.2634 15 1 7.3282 5.8928 2.3317 16 6 7.6647 7.2912 0.7544 17 7 7.6821 7.4839 -0.5465 18 14 8.0771 8.6977 1.9124 19 1 9.5371 8.7043 2.1831 20 1 7.6839 9.9857 1.2866 21 1 7.3379 8.5214 3.1883 22 6 5.3691 2.8465 -0.7484 23 6 3.8407 2.7461 -0.7209 24 1 3.4588 2.7280 -1.7417 25 6 3.2628 3.9537 0.0198 26 1 -0.3634 0.5138 -0.8900 27 1 -0.3633 -1.0278 -0.0005 28 1 -0.3634 0.5138 0.8900 29 1 1.8934 -0.5138 -0.8899 30 1 1.8933 -0.5138 0.8901 31 1 3.5257 2.3712 1.9512 32 1 3.6255 0.5939 1.9641 33 1 5.8891 0.6716 1.0098 34 1 5.8360 1.7080 2.4590 35 1 9.0867 4.4325 0.0222 36 1 7.9889 3.7815 -1.2185 37 1 8.3939 5.5147 -1.2096 38 1 7.9087 8.3564 -0.9046 39 1 5.6646 3.8062 -1.1722 40 1 5.7777 2.0365 -1.3524 41 1 3.5573 4.8694 -0.4929 42 1 2.1753 3.8817 0.0391 43 1 3.6439 3.9702 1.0408 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000597722364.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:22:44 Heat of formation + Delta-G solvation = -114.156915 kcal Electronic energy + Delta-G solvation = -22070.081268 eV Core-core repulsion = 18921.115895 eV Total energy + Delta-G solvation = -3148.965373 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 269.178 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -41.39945 -39.60386 -37.51030 -35.84730 -33.93639 -33.20010 -32.03183 -31.25150 -27.82285 -27.25177 -26.13656 -24.58095 -23.48276 -23.28070 -21.00204 -19.57361 -18.42369 -17.99602 -17.39835 -16.97497 -16.50333 -16.42060 -15.97230 -15.86340 -14.95936 -14.91912 -14.74314 -14.30536 -14.16207 -13.70155 -13.48807 -13.34199 -13.02439 -12.99151 -12.86123 -12.73278 -12.62952 -12.58238 -12.41035 -12.23967 -12.11148 -12.07398 -11.94034 -11.52592 -11.34722 -11.02700 -10.59632 -10.39263 -10.16732 -9.53067 -8.15797 -6.25518 1.39365 1.40369 1.51271 1.90655 2.19425 2.45647 2.74429 3.13872 3.66757 3.73387 3.99558 4.03372 4.19908 4.23440 4.26941 4.37344 4.40430 4.52387 4.56104 4.63712 4.65892 4.74130 4.81537 4.86302 4.91748 4.94827 4.97535 5.03793 5.09116 5.11042 5.17201 5.23230 5.32982 5.42825 5.49259 5.68798 5.76644 5.93639 6.19448 6.38247 6.58937 6.79661 7.38661 7.50624 8.90148 Molecular weight = 269.18amu Principal moments of inertia in cm(-1) A = 0.030317 B = 0.004669 C = 0.004527 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 923.365059 B = 5996.173928 C = 6183.729121 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C 0.048 3.952 3 O -0.396 6.396 4 C 0.105 3.895 5 H 0.084 0.916 6 C -0.148 4.148 7 C 0.111 3.889 8 N -0.616 5.616 9 C 0.523 3.477 10 O -0.594 6.594 11 C 0.030 3.970 12 H 0.046 0.954 13 C -0.117 4.117 14 C -0.529 4.529 15 H 0.039 0.961 16 C 0.024 3.976 17 N -0.907 5.907 18 Si 0.952 3.048 19 H -0.276 1.276 20 H -0.272 1.272 21 H -0.279 1.279 22 C 0.108 3.892 23 C -0.096 4.096 24 H 0.106 0.894 25 C -0.136 4.136 26 H 0.058 0.942 27 H 0.089 0.911 28 H 0.053 0.947 29 H 0.060 0.940 30 H 0.053 0.947 31 H 0.054 0.946 32 H 0.092 0.908 33 H 0.088 0.912 34 H 0.066 0.934 35 H 0.017 0.983 36 H 0.046 0.954 37 H 0.074 0.926 38 H 0.266 0.734 39 H 0.087 0.913 40 H 0.095 0.905 41 H 0.044 0.956 42 H 0.063 0.937 43 H 0.033 0.967 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.102 -15.716 -4.565 20.354 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.028 4.028 3 O -0.316 6.316 4 C 0.047 3.953 5 H 0.102 0.898 6 C -0.186 4.186 7 C -0.011 4.011 8 N -0.349 5.349 9 C 0.314 3.686 10 O -0.474 6.474 11 C 0.009 3.991 12 H 0.064 0.936 13 C -0.175 4.175 14 C -0.567 4.567 15 H 0.058 0.942 16 C -0.175 4.175 17 N -0.546 5.546 18 Si 0.778 3.222 19 H -0.202 1.202 20 H -0.197 1.197 21 H -0.204 1.204 22 C -0.014 4.014 23 C -0.115 4.115 24 H 0.124 0.876 25 C -0.193 4.193 26 H 0.077 0.923 27 H 0.107 0.893 28 H 0.072 0.928 29 H 0.079 0.921 30 H 0.071 0.929 31 H 0.073 0.927 32 H 0.110 0.890 33 H 0.106 0.894 34 H 0.084 0.916 35 H 0.036 0.964 36 H 0.065 0.935 37 H 0.092 0.908 38 H 0.075 0.925 39 H 0.105 0.895 40 H 0.114 0.886 41 H 0.063 0.937 42 H 0.082 0.918 43 H 0.052 0.948 Dipole moment (debyes) X Y Z Total from point charges -11.947 -15.501 -4.125 20.001 hybrid contribution 0.537 0.883 0.884 1.360 sum -11.410 -14.617 -3.240 18.824 Atomic orbital electron populations 1.21755 0.93267 1.03167 1.02461 1.22705 0.96075 0.83182 1.00858 1.87934 1.20863 1.27749 1.95082 1.21977 0.81093 0.97786 0.94438 0.89789 1.22453 0.94506 1.03057 0.98620 1.21645 0.94485 0.88505 0.96452 1.48260 1.47992 1.23451 1.15210 1.21640 0.76403 0.84454 0.86082 1.90487 1.53845 1.79456 1.23604 1.18798 0.96741 0.89117 0.94467 0.93578 1.21528 0.96680 1.00810 0.98473 1.21198 1.47663 0.95211 0.92675 0.94235 1.25526 0.94956 1.00349 0.96704 1.69932 1.49016 1.24014 1.11636 0.85651 0.78527 0.78974 0.79080 1.20152 1.19677 1.20443 1.22022 0.93142 1.04262 0.81982 1.21570 0.94315 0.94504 1.01105 0.87591 1.21674 1.00833 0.97254 0.99544 0.92302 0.89264 0.92819 0.92134 0.92859 0.92745 0.88992 0.89355 0.91582 0.96414 0.93464 0.90769 0.92504 0.89484 0.88649 0.93663 0.91783 0.94823 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.02 10.28 71.98 0.74 -1.28 16 2 C 0.05 0.75 6.47 71.98 0.47 1.21 16 3 O -0.40 -8.78 9.38 -148.98 -1.40 -10.18 16 4 C 0.10 2.27 2.25 30.62 0.07 2.34 16 5 H 0.08 1.43 7.79 -2.39 -0.02 1.42 16 6 C -0.15 -3.64 5.37 30.82 0.17 -3.48 16 7 C 0.11 3.27 6.45 86.51 0.56 3.82 16 8 N -0.62 -21.88 2.41 -818.08 -1.97 -23.85 16 9 C 0.52 24.84 6.77 87.66 0.59 25.44 16 10 O -0.59 -32.71 15.31 -3.03 -0.05 -32.76 16 11 C 0.03 1.52 1.78 -12.29 -0.02 1.50 16 12 H 0.05 2.37 6.37 -2.39 -0.02 2.35 16 13 C -0.12 -5.56 8.74 71.98 0.63 -4.93 16 14 C -0.53 -31.16 8.33 25.60 0.21 -30.95 16 15 H 0.04 2.50 7.08 -2.91 -0.02 2.48 16 16 C 0.02 1.37 5.30 84.65 0.45 1.82 16 17 N -0.91 -50.86 11.35 21.45 0.24 -50.62 16 18 Si 0.95 45.36 29.54 68.60 2.03 47.39 16 19 H -0.28 -12.89 7.11 99.48 0.71 -12.19 16 20 H -0.27 -12.23 7.11 99.48 0.71 -11.52 16 21 H -0.28 -13.47 7.11 99.48 0.71 -12.77 16 22 C 0.11 3.07 5.37 86.36 0.46 3.53 16 23 C -0.10 -2.38 2.94 -10.71 -0.03 -2.41 16 24 H 0.11 2.21 8.14 -2.39 -0.02 2.20 16 25 C -0.14 -4.16 8.57 71.98 0.62 -3.54 16 26 H 0.06 0.84 8.14 -2.39 -0.02 0.82 16 27 H 0.09 0.81 8.14 -2.38 -0.02 0.79 16 28 H 0.05 0.82 8.14 -2.39 -0.02 0.80 16 29 H 0.06 0.77 8.08 -2.39 -0.02 0.76 16 30 H 0.05 0.75 7.84 -2.38 -0.02 0.73 16 31 H 0.05 1.64 6.33 -2.39 -0.02 1.62 16 32 H 0.09 1.82 7.84 -2.39 -0.02 1.80 16 33 H 0.09 2.06 8.14 -2.39 -0.02 2.04 16 34 H 0.07 2.29 7.04 -2.39 -0.02 2.27 16 35 H 0.02 0.85 8.14 -2.39 -0.02 0.83 16 36 H 0.05 1.85 7.65 -2.39 -0.02 1.83 16 37 H 0.07 3.79 6.17 -2.39 -0.01 3.78 16 38 H 0.27 14.08 8.31 -92.71 -0.77 13.31 16 39 H 0.09 2.84 5.20 -2.39 -0.01 2.83 16 40 H 0.10 2.10 8.14 -2.39 -0.02 2.08 16 41 H 0.04 1.48 8.14 -2.39 -0.02 1.46 16 42 H 0.06 1.83 7.73 -2.39 -0.02 1.81 16 43 H 0.03 1.19 5.97 -2.39 -0.01 1.18 16 Total: -1.00 -68.99 332.44 4.74 -64.25 By element: Atomic # 1 Polarization: 11.73 SS G_CDS: 0.97 Total: 12.70 kcal Atomic # 6 Polarization: -11.84 SS G_CDS: 4.91 Total: -6.93 kcal Atomic # 7 Polarization: -72.74 SS G_CDS: -1.72 Total: -74.47 kcal Atomic # 8 Polarization: -41.50 SS G_CDS: -1.44 Total: -42.94 kcal Atomic # 14 Polarization: 45.36 SS G_CDS: 2.03 Total: 47.39 kcal Total: -68.99 4.74 -64.25 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000597722364.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -49.906 kcal (2) G-P(sol) polarization free energy of solvation -68.992 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -118.898 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.741 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.251 kcal (6) G-S(sol) free energy of system = (1) + (5) -114.157 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds