Wall clock time and date at job start Mon Mar 30 2020 01:22:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 O 1.42892 * 109.47068 * 2 1 4 4 C 1.42905 * 114.00059 * 179.97438 * 3 2 1 5 5 H 1.08998 * 109.46000 * 30.02644 * 4 3 2 6 6 C 1.53044 * 109.44760 * 270.06308 * 4 3 2 7 7 C 1.53198 * 109.30831 * 178.62044 * 6 4 3 8 8 N 1.46927 * 108.77784 * 54.63414 * 7 6 4 9 9 C 1.34772 * 120.62867 * 126.36726 * 8 7 6 10 10 O 1.21279 * 119.99894 * 175.41647 * 9 8 7 11 11 C 1.50699 * 120.00142 * 355.41423 * 9 8 7 12 12 H 1.08998 * 109.47584 * 35.45695 * 11 9 8 13 13 C 1.53001 * 109.47028 * 155.45696 * 11 9 8 14 14 C 1.50700 * 109.46949 * 275.45149 * 11 9 8 15 15 H 1.07997 * 120.00282 * 0.02562 * 14 11 9 16 16 C 1.37884 * 119.99842 * 179.97438 * 14 11 9 17 17 N 1.31518 * 120.00027 * 0.02562 * 16 14 11 18 18 Si 1.86792 * 120.00004 * 180.02562 * 16 14 11 19 19 H 1.48498 * 109.47327 * 0.02562 * 18 16 14 20 20 H 1.48503 * 109.47571 * 120.00095 * 18 16 14 21 21 H 1.48498 * 109.47476 * 240.00125 * 18 16 14 22 22 C 1.46929 * 118.73441 * 306.39007 * 8 7 6 23 23 C 1.53036 * 109.46278 * 149.99799 * 4 3 2 24 24 H 1.09007 * 109.49382 * 61.42081 * 23 4 3 25 25 C 1.53004 * 109.52328 * 301.34349 * 23 4 3 26 26 H 1.08998 * 109.46769 * 60.00362 * 1 2 3 27 27 H 1.08997 * 109.46934 * 180.02562 * 1 2 3 28 28 H 1.09005 * 109.47051 * 300.00197 * 1 2 3 29 29 H 1.08997 * 109.47202 * 239.99477 * 2 1 3 30 30 H 1.09002 * 109.46731 * 120.00146 * 2 1 3 31 31 H 1.09002 * 109.49342 * 298.56443 * 6 4 3 32 32 H 1.08994 * 109.49915 * 58.63276 * 6 4 3 33 33 H 1.08998 * 109.57952 * 174.42065 * 7 6 4 34 34 H 1.08997 * 109.58657 * 294.83979 * 7 6 4 35 35 H 1.09004 * 109.46807 * 305.16876 * 13 11 9 36 36 H 1.08997 * 109.47503 * 65.16844 * 13 11 9 37 37 H 1.09001 * 109.47285 * 185.17455 * 13 11 9 38 38 H 0.96999 * 119.99774 * 179.97438 * 17 16 14 39 39 H 1.08994 * 109.58656 * 293.81539 * 22 8 7 40 40 H 1.09000 * 109.57592 * 173.39909 * 22 8 7 41 41 H 1.09000 * 109.46748 * 300.13997 * 25 23 4 42 42 H 1.08994 * 109.47024 * 60.14350 * 25 23 4 43 43 H 1.09007 * 109.46592 * 180.14489 * 25 23 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 8 2.0064 1.3472 0.0000 4 6 3.4310 1.4601 0.0006 5 1 3.8634 0.6017 -0.5134 6 6 3.9384 1.4989 1.4439 7 6 5.4680 1.5852 1.4409 8 7 5.8750 2.7386 0.6268 9 6 6.6964 3.6801 1.1322 10 8 7.0917 4.5827 0.4252 11 6 7.1236 3.6113 2.5757 12 1 7.2469 2.5687 2.8689 13 6 8.4516 4.3507 2.7504 14 6 6.0722 4.2558 3.4419 15 1 5.1834 4.6730 2.9922 16 6 6.2445 4.3117 4.8088 17 7 7.3266 3.8031 5.3566 18 14 4.9410 5.1099 5.8826 19 1 3.8292 5.6007 5.0292 20 1 4.4182 4.1125 6.8506 21 1 5.5390 6.2507 6.6217 22 6 5.3692 2.8463 -0.7484 23 6 3.8409 2.7459 -0.7209 24 1 3.4292 3.6062 -0.1932 25 6 3.3048 2.7213 -2.1538 26 1 -0.3633 0.5138 -0.8900 27 1 -0.3633 -1.0276 0.0005 28 1 -0.3633 0.5139 0.8900 29 1 1.8934 -0.5139 -0.8899 30 1 1.8933 -0.5139 0.8900 31 1 3.5259 2.3711 1.9512 32 1 3.6256 0.5937 1.9641 33 1 5.8286 1.7128 2.4616 34 1 5.8846 0.6723 1.0154 35 1 9.1878 3.9440 2.0570 36 1 8.3067 5.4113 2.5455 37 1 8.8066 4.2233 3.7730 38 1 7.4480 3.8429 6.3181 39 1 5.7778 2.0363 -1.3525 40 1 5.6649 3.8060 -1.1722 41 1 3.7159 1.8603 -2.6807 42 1 2.2174 2.6499 -2.1337 43 1 3.5995 3.6364 -2.6676 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000597722366.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:22:49 Heat of formation + Delta-G solvation = -101.526068 kcal Electronic energy + Delta-G solvation = -22036.978817 eV Core-core repulsion = 18888.561158 eV Total energy + Delta-G solvation = -3148.417659 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 269.178 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -39.81447 -38.26551 -36.09281 -33.92395 -33.08050 -31.63420 -30.36679 -30.23487 -26.63299 -25.19782 -24.65807 -22.93664 -22.05519 -21.92445 -19.94127 -18.17539 -16.98479 -16.43325 -16.09449 -15.67509 -15.28043 -14.78007 -14.45983 -14.18465 -13.89289 -13.42757 -13.19733 -12.97366 -12.61574 -12.41969 -12.09047 -11.97117 -11.82403 -11.72200 -11.66739 -11.38463 -11.02119 -10.94875 -10.81344 -10.76308 -10.75535 -10.42896 -10.27919 -10.19429 -10.04767 -9.32815 -9.01214 -8.62168 -8.33844 -8.01702 -6.11587 -4.18725 3.25219 3.33662 3.38103 3.59497 3.67266 3.87471 4.39564 4.76677 4.90550 5.01030 5.06677 5.17274 5.20631 5.27373 5.28793 5.42558 5.51744 5.59936 5.62253 5.73811 5.77019 5.85296 5.93027 5.98055 6.03351 6.05189 6.22581 6.29397 6.38866 6.40324 6.58383 6.84570 7.00775 7.08003 7.25569 7.31656 7.57393 7.75999 7.94957 8.15341 8.28572 8.81828 9.21505 9.46884 10.94785 Molecular weight = 269.18amu Principal moments of inertia in cm(-1) A = 0.017640 B = 0.006106 C = 0.005006 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1586.937202 B = 4584.505315 C = 5591.891184 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C 0.057 3.943 3 O -0.380 6.380 4 C 0.099 3.901 5 H 0.056 0.944 6 C -0.154 4.154 7 C 0.113 3.887 8 N -0.621 5.621 9 C 0.530 3.470 10 O -0.565 6.565 11 C 0.030 3.970 12 H 0.047 0.953 13 C -0.121 4.121 14 C -0.506 4.506 15 H 0.058 0.942 16 C 0.068 3.932 17 N -0.885 5.885 18 Si 0.896 3.104 19 H -0.272 1.272 20 H -0.283 1.283 21 H -0.282 1.282 22 C 0.119 3.881 23 C -0.102 4.102 24 H 0.082 0.918 25 C -0.139 4.139 26 H 0.060 0.940 27 H 0.067 0.933 28 H 0.062 0.938 29 H 0.044 0.956 30 H 0.047 0.953 31 H 0.082 0.918 32 H 0.070 0.930 33 H 0.113 0.887 34 H 0.054 0.946 35 H 0.009 0.991 36 H 0.038 0.962 37 H 0.084 0.916 38 H 0.262 0.738 39 H 0.056 0.944 40 H 0.092 0.908 41 H 0.050 0.950 42 H 0.063 0.937 43 H 0.055 0.945 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.189 -9.637 -9.758 16.508 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.020 4.020 3 O -0.300 6.300 4 C 0.041 3.959 5 H 0.074 0.926 6 C -0.193 4.193 7 C -0.010 4.010 8 N -0.355 5.355 9 C 0.323 3.677 10 O -0.443 6.443 11 C 0.009 3.991 12 H 0.065 0.935 13 C -0.179 4.179 14 C -0.544 4.544 15 H 0.076 0.924 16 C -0.135 4.135 17 N -0.523 5.523 18 Si 0.724 3.276 19 H -0.197 1.197 20 H -0.209 1.209 21 H -0.208 1.208 22 C -0.005 4.005 23 C -0.122 4.122 24 H 0.101 0.899 25 C -0.197 4.197 26 H 0.079 0.921 27 H 0.086 0.914 28 H 0.082 0.918 29 H 0.062 0.938 30 H 0.065 0.935 31 H 0.101 0.899 32 H 0.088 0.912 33 H 0.131 0.869 34 H 0.072 0.928 35 H 0.028 0.972 36 H 0.057 0.943 37 H 0.102 0.898 38 H 0.072 0.928 39 H 0.075 0.925 40 H 0.110 0.890 41 H 0.069 0.931 42 H 0.082 0.918 43 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges -8.991 -9.013 -9.947 16.156 hybrid contribution -0.642 0.065 0.689 0.943 sum -9.632 -8.948 -9.258 16.080 Atomic orbital electron populations 1.21734 0.94079 1.01901 1.03049 1.22446 0.95308 0.84450 0.99778 1.87920 1.21286 1.25749 1.95039 1.22124 0.80544 0.97528 0.95655 0.92551 1.22408 0.96624 1.03503 0.96721 1.21690 0.93325 0.87582 0.98387 1.48212 1.49431 1.24954 1.12932 1.21984 0.75520 0.79126 0.91112 1.90518 1.56580 1.35186 1.62044 1.18945 0.95895 0.98558 0.85717 0.93523 1.21583 0.95426 0.99190 1.01684 1.20764 1.04036 1.38753 0.90895 0.92390 1.24893 0.95691 0.95085 0.97812 1.69905 1.26090 1.45032 1.11305 0.86458 0.81662 0.79193 0.80314 1.19670 1.20882 1.20831 1.21470 0.91449 1.02922 0.84644 1.21594 0.95940 0.97991 0.96631 0.89933 1.21687 1.01543 1.01393 0.95082 0.92056 0.91429 0.91839 0.93796 0.93483 0.89946 0.91179 0.86931 0.92820 0.97170 0.94303 0.89783 0.92766 0.92549 0.88993 0.93127 0.91831 0.92554 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.34 10.28 37.16 0.38 -0.96 16 2 C 0.06 0.60 6.47 37.16 0.24 0.84 16 3 O -0.38 -5.17 9.26 -35.23 -0.33 -5.49 16 4 C 0.10 1.35 2.02 -26.69 -0.05 1.29 16 5 H 0.06 0.69 7.79 -51.93 -0.40 0.28 16 6 C -0.15 -2.32 5.69 -26.61 -0.15 -2.47 16 7 C 0.11 1.88 6.27 -3.71 -0.02 1.86 16 8 N -0.62 -11.90 2.97 -172.77 -0.51 -12.41 16 9 C 0.53 12.49 6.74 -10.99 -0.07 12.41 16 10 O -0.57 -14.72 15.62 5.56 0.09 -14.64 16 11 C 0.03 0.74 1.81 -92.92 -0.17 0.57 16 12 H 0.05 1.16 6.30 -51.93 -0.33 0.83 16 13 C -0.12 -3.07 8.33 37.16 0.31 -2.76 16 14 C -0.51 -13.57 8.36 -34.44 -0.29 -13.85 16 15 H 0.06 1.60 7.74 -52.49 -0.41 1.20 16 16 C 0.07 1.80 5.30 -17.82 -0.09 1.71 16 17 N -0.89 -24.17 11.38 55.43 0.63 -23.54 16 18 Si 0.90 20.91 29.54 -169.99 -5.02 15.89 16 19 H -0.27 -6.38 7.11 56.52 0.40 -5.98 16 20 H -0.28 -6.47 7.11 56.52 0.40 -6.07 16 21 H -0.28 -6.61 7.11 56.52 0.40 -6.20 16 22 C 0.12 1.92 5.70 -3.71 -0.02 1.90 16 23 C -0.10 -1.48 2.62 -90.50 -0.24 -1.71 16 24 H 0.08 1.39 8.14 -51.93 -0.42 0.96 16 25 C -0.14 -1.65 9.04 37.16 0.34 -1.31 16 26 H 0.06 0.54 8.14 -51.93 -0.42 0.12 16 27 H 0.07 0.47 8.14 -51.93 -0.42 0.04 16 28 H 0.06 0.60 8.14 -51.93 -0.42 0.18 16 29 H 0.04 0.41 8.08 -51.93 -0.42 -0.01 16 30 H 0.05 0.47 7.84 -51.93 -0.41 0.07 16 31 H 0.08 1.45 8.14 -51.93 -0.42 1.03 16 32 H 0.07 0.92 7.84 -51.93 -0.41 0.52 16 33 H 0.11 2.13 5.35 -51.93 -0.28 1.85 16 34 H 0.05 0.76 8.14 -51.93 -0.42 0.33 16 35 H 0.01 0.22 8.14 -51.93 -0.42 -0.20 16 36 H 0.04 1.02 8.04 -51.93 -0.42 0.60 16 37 H 0.08 2.22 6.23 -51.93 -0.32 1.90 16 38 H 0.26 6.82 8.31 -40.82 -0.34 6.48 16 39 H 0.06 0.80 8.14 -51.93 -0.42 0.37 16 40 H 0.09 1.64 7.03 -51.93 -0.37 1.27 16 41 H 0.05 0.53 8.14 -51.93 -0.42 0.11 16 42 H 0.06 0.75 7.65 -51.93 -0.40 0.35 16 43 H 0.06 0.64 8.14 -51.93 -0.42 0.21 16 LS Contribution 338.35 15.07 5.10 5.10 Total: -1.00 -29.91 338.35 -7.40 -37.31 By element: Atomic # 1 Polarization: 7.77 SS G_CDS: -7.52 Total: 0.25 kcal Atomic # 6 Polarization: -2.64 SS G_CDS: 0.16 Total: -2.48 kcal Atomic # 7 Polarization: -36.07 SS G_CDS: 0.12 Total: -35.95 kcal Atomic # 8 Polarization: -19.89 SS G_CDS: -0.24 Total: -20.13 kcal Atomic # 14 Polarization: 20.91 SS G_CDS: -5.02 Total: 15.89 kcal Total LS contribution 5.10 Total: 5.10 kcal Total: -29.91 -7.40 -37.31 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000597722366.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -64.213 kcal (2) G-P(sol) polarization free energy of solvation -29.910 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -94.122 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.404 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.314 kcal (6) G-S(sol) free energy of system = (1) + (5) -101.526 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds