Wall clock time and date at job start Mon Mar 30 2020 01:22:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 O 1.42892 * 109.47068 * 2 1 4 4 C 1.42905 * 114.00059 * 179.97438 * 3 2 1 5 5 H 1.08998 * 109.46000 * 30.02644 * 4 3 2 6 6 C 1.53044 * 109.44760 * 270.06308 * 4 3 2 7 7 C 1.53198 * 109.30831 * 178.62044 * 6 4 3 8 8 N 1.46927 * 108.77784 * 54.63414 * 7 6 4 9 9 C 1.34772 * 120.62867 * 126.36726 * 8 7 6 10 10 O 1.21279 * 119.99894 * 175.41647 * 9 8 7 11 11 C 1.50699 * 120.00142 * 355.41423 * 9 8 7 12 12 H 1.08998 * 109.47584 * 35.45695 * 11 9 8 13 13 C 1.53001 * 109.47028 * 155.45696 * 11 9 8 14 14 C 1.50700 * 109.46949 * 275.45149 * 11 9 8 15 15 H 1.07997 * 120.00282 * 0.02562 * 14 11 9 16 16 C 1.37884 * 119.99842 * 179.97438 * 14 11 9 17 17 N 1.31518 * 120.00027 * 0.02562 * 16 14 11 18 18 Si 1.86792 * 120.00004 * 180.02562 * 16 14 11 19 19 H 1.48498 * 109.47327 * 0.02562 * 18 16 14 20 20 H 1.48503 * 109.47571 * 120.00095 * 18 16 14 21 21 H 1.48498 * 109.47476 * 240.00125 * 18 16 14 22 22 C 1.46929 * 118.73441 * 306.39007 * 8 7 6 23 23 C 1.53036 * 109.46278 * 149.99799 * 4 3 2 24 24 H 1.09007 * 109.49382 * 61.42081 * 23 4 3 25 25 C 1.53004 * 109.52328 * 301.34349 * 23 4 3 26 26 H 1.08998 * 109.46769 * 60.00362 * 1 2 3 27 27 H 1.08997 * 109.46934 * 180.02562 * 1 2 3 28 28 H 1.09005 * 109.47051 * 300.00197 * 1 2 3 29 29 H 1.08997 * 109.47202 * 239.99477 * 2 1 3 30 30 H 1.09002 * 109.46731 * 120.00146 * 2 1 3 31 31 H 1.09002 * 109.49342 * 298.56443 * 6 4 3 32 32 H 1.08994 * 109.49915 * 58.63276 * 6 4 3 33 33 H 1.08998 * 109.57952 * 174.42065 * 7 6 4 34 34 H 1.08997 * 109.58657 * 294.83979 * 7 6 4 35 35 H 1.09004 * 109.46807 * 305.16876 * 13 11 9 36 36 H 1.08997 * 109.47503 * 65.16844 * 13 11 9 37 37 H 1.09001 * 109.47285 * 185.17455 * 13 11 9 38 38 H 0.96999 * 119.99774 * 179.97438 * 17 16 14 39 39 H 1.08994 * 109.58656 * 293.81539 * 22 8 7 40 40 H 1.09000 * 109.57592 * 173.39909 * 22 8 7 41 41 H 1.09000 * 109.46748 * 300.13997 * 25 23 4 42 42 H 1.08994 * 109.47024 * 60.14350 * 25 23 4 43 43 H 1.09007 * 109.46592 * 180.14489 * 25 23 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 8 2.0064 1.3472 0.0000 4 6 3.4310 1.4601 0.0006 5 1 3.8634 0.6017 -0.5134 6 6 3.9384 1.4989 1.4439 7 6 5.4680 1.5852 1.4409 8 7 5.8750 2.7386 0.6268 9 6 6.6964 3.6801 1.1322 10 8 7.0917 4.5827 0.4252 11 6 7.1236 3.6113 2.5757 12 1 7.2469 2.5687 2.8689 13 6 8.4516 4.3507 2.7504 14 6 6.0722 4.2558 3.4419 15 1 5.1834 4.6730 2.9922 16 6 6.2445 4.3117 4.8088 17 7 7.3266 3.8031 5.3566 18 14 4.9410 5.1099 5.8826 19 1 3.8292 5.6007 5.0292 20 1 4.4182 4.1125 6.8506 21 1 5.5390 6.2507 6.6217 22 6 5.3692 2.8463 -0.7484 23 6 3.8409 2.7459 -0.7209 24 1 3.4292 3.6062 -0.1932 25 6 3.3048 2.7213 -2.1538 26 1 -0.3633 0.5138 -0.8900 27 1 -0.3633 -1.0276 0.0005 28 1 -0.3633 0.5139 0.8900 29 1 1.8934 -0.5139 -0.8899 30 1 1.8933 -0.5139 0.8900 31 1 3.5259 2.3711 1.9512 32 1 3.6256 0.5937 1.9641 33 1 5.8286 1.7128 2.4616 34 1 5.8846 0.6723 1.0154 35 1 9.1878 3.9440 2.0570 36 1 8.3067 5.4113 2.5455 37 1 8.8066 4.2233 3.7730 38 1 7.4480 3.8429 6.3181 39 1 5.7778 2.0363 -1.3525 40 1 5.6649 3.8060 -1.1722 41 1 3.7159 1.8603 -2.6807 42 1 2.2174 2.6499 -2.1337 43 1 3.5995 3.6364 -2.6676 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000597722366.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:22:48 Heat of formation + Delta-G solvation = -119.014877 kcal Electronic energy + Delta-G solvation = -22037.737189 eV Core-core repulsion = 18888.561158 eV Total energy + Delta-G solvation = -3149.176031 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 269.178 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -41.28464 -39.63541 -37.42764 -35.90329 -34.43717 -32.74017 -32.32554 -31.31963 -27.92206 -27.22191 -26.06394 -23.91386 -23.71358 -23.10676 -21.20406 -19.86704 -18.42887 -18.29978 -17.55686 -17.03427 -16.54915 -16.24734 -16.03063 -15.59264 -14.98090 -14.89925 -14.72768 -14.41767 -13.77736 -13.68758 -13.56985 -13.27151 -13.09617 -12.97932 -12.91442 -12.79395 -12.76626 -12.66643 -12.37666 -12.24824 -12.11018 -11.98669 -11.91127 -11.71585 -11.33982 -11.08892 -10.62984 -10.42078 -10.20625 -9.55838 -8.18382 -6.31935 1.38189 1.41404 1.51637 1.85769 2.22537 2.42930 2.74051 3.11103 3.62628 3.80126 3.94074 4.09955 4.14966 4.23467 4.28412 4.38035 4.40023 4.48322 4.55555 4.62694 4.71663 4.73612 4.77058 4.89234 4.89760 4.96840 4.99280 5.06789 5.09316 5.17054 5.19777 5.27441 5.31576 5.39957 5.46212 5.62952 5.78719 5.85061 6.13506 6.37779 6.53784 6.70350 7.33153 7.44092 8.87720 Molecular weight = 269.18amu Principal moments of inertia in cm(-1) A = 0.017640 B = 0.006106 C = 0.005006 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1586.937202 B = 4584.505315 C = 5591.891184 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C 0.048 3.952 3 O -0.398 6.398 4 C 0.106 3.894 5 H 0.085 0.915 6 C -0.148 4.148 7 C 0.111 3.889 8 N -0.616 5.616 9 C 0.525 3.475 10 O -0.600 6.600 11 C 0.028 3.972 12 H 0.048 0.952 13 C -0.111 4.111 14 C -0.519 4.519 15 H 0.040 0.960 16 C 0.030 3.970 17 N -0.905 5.905 18 Si 0.953 3.047 19 H -0.278 1.278 20 H -0.270 1.270 21 H -0.279 1.279 22 C 0.117 3.883 23 C -0.099 4.099 24 H 0.048 0.952 25 C -0.131 4.131 26 H 0.059 0.941 27 H 0.090 0.910 28 H 0.051 0.949 29 H 0.062 0.938 30 H 0.052 0.948 31 H 0.046 0.954 32 H 0.093 0.907 33 H 0.085 0.915 34 H 0.092 0.908 35 H 0.023 0.977 36 H 0.018 0.982 37 H 0.071 0.929 38 H 0.267 0.733 39 H 0.090 0.910 40 H 0.071 0.929 41 H 0.072 0.928 42 H 0.064 0.936 43 H 0.057 0.943 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.428 -11.734 -10.632 18.959 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.028 4.028 3 O -0.318 6.318 4 C 0.049 3.951 5 H 0.102 0.898 6 C -0.187 4.187 7 C -0.012 4.012 8 N -0.348 5.348 9 C 0.317 3.683 10 O -0.482 6.482 11 C 0.007 3.993 12 H 0.066 0.934 13 C -0.169 4.169 14 C -0.558 4.558 15 H 0.058 0.942 16 C -0.170 4.170 17 N -0.543 5.543 18 Si 0.779 3.221 19 H -0.202 1.202 20 H -0.195 1.195 21 H -0.205 1.205 22 C -0.005 4.005 23 C -0.118 4.118 24 H 0.066 0.934 25 C -0.188 4.188 26 H 0.078 0.922 27 H 0.109 0.891 28 H 0.070 0.930 29 H 0.081 0.919 30 H 0.070 0.930 31 H 0.065 0.935 32 H 0.111 0.889 33 H 0.104 0.896 34 H 0.110 0.890 35 H 0.042 0.958 36 H 0.037 0.963 37 H 0.090 0.910 38 H 0.076 0.924 39 H 0.108 0.892 40 H 0.089 0.911 41 H 0.091 0.909 42 H 0.083 0.917 43 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges -10.261 -11.154 -10.825 18.625 hybrid contribution -0.289 0.662 0.954 1.196 sum -10.550 -10.492 -9.872 17.856 Atomic orbital electron populations 1.21755 0.93188 1.03231 1.02417 1.22710 0.96122 0.83077 1.00898 1.87914 1.20887 1.27965 1.95057 1.22000 0.81106 0.97733 0.94305 0.89751 1.22345 0.95207 1.02960 0.98175 1.21833 0.94576 0.87798 0.96943 1.48213 1.47822 1.24362 1.14397 1.21654 0.76515 0.79721 0.90450 1.90489 1.58379 1.36759 1.62539 1.18874 0.95249 0.98227 0.86977 0.93422 1.21444 0.96267 0.98081 1.01132 1.20803 1.03981 1.39344 0.91649 0.94207 1.25521 0.97441 0.95390 0.98677 1.69974 1.27113 1.45390 1.11798 0.85578 0.79233 0.78588 0.78722 1.20240 1.19479 1.20488 1.21678 0.92733 1.03160 0.82942 1.21513 0.94435 0.97480 0.98395 0.93370 1.21622 1.01532 1.02540 0.93129 0.92170 0.89123 0.93009 0.91946 0.92967 0.93520 0.88876 0.89642 0.89028 0.95779 0.96256 0.91037 0.92353 0.89167 0.91059 0.90861 0.91714 0.92422 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.28 10.28 71.98 0.74 -1.54 16 2 C 0.05 0.85 6.47 71.98 0.47 1.32 16 3 O -0.40 -9.94 9.26 -148.98 -1.38 -11.32 16 4 C 0.11 2.63 2.02 30.62 0.06 2.69 16 5 H 0.08 1.67 7.79 -2.39 -0.02 1.65 16 6 C -0.15 -4.28 5.69 30.68 0.17 -4.11 16 7 C 0.11 3.54 6.27 86.36 0.54 4.08 16 8 N -0.62 -23.40 2.97 -818.92 -2.43 -25.84 16 9 C 0.52 25.25 6.74 87.66 0.59 25.84 16 10 O -0.60 -32.12 15.62 -3.03 -0.05 -32.17 16 11 C 0.03 1.42 1.81 -12.29 -0.02 1.40 16 12 H 0.05 2.42 6.30 -2.39 -0.02 2.41 16 13 C -0.11 -5.79 8.33 71.98 0.60 -5.19 16 14 C -0.52 -28.61 8.36 25.60 0.21 -28.40 16 15 H 0.04 2.29 7.74 -2.91 -0.02 2.26 16 16 C 0.03 1.64 5.30 84.66 0.45 2.09 16 17 N -0.90 -49.69 11.38 21.45 0.24 -49.45 16 18 Si 0.95 43.20 29.54 68.60 2.03 45.23 16 19 H -0.28 -12.72 7.11 99.48 0.71 -12.01 16 20 H -0.27 -11.61 7.11 99.48 0.71 -10.90 16 21 H -0.28 -12.48 7.11 99.48 0.71 -11.77 16 22 C 0.12 3.65 5.70 86.36 0.49 4.14 16 23 C -0.10 -2.73 2.62 -10.72 -0.03 -2.76 16 24 H 0.05 1.65 8.14 -2.38 -0.02 1.63 16 25 C -0.13 -2.77 9.04 71.98 0.65 -2.12 16 26 H 0.06 0.93 8.14 -2.39 -0.02 0.91 16 27 H 0.09 0.96 8.14 -2.39 -0.02 0.94 16 28 H 0.05 0.90 8.14 -2.38 -0.02 0.88 16 29 H 0.06 0.90 8.08 -2.39 -0.02 0.88 16 30 H 0.05 0.88 7.84 -2.39 -0.02 0.86 16 31 H 0.05 1.67 8.14 -2.39 -0.02 1.65 16 32 H 0.09 2.24 7.84 -2.39 -0.02 2.22 16 33 H 0.09 3.24 5.35 -2.39 -0.01 3.23 16 34 H 0.09 2.28 8.14 -2.39 -0.02 2.26 16 35 H 0.02 1.13 8.14 -2.39 -0.02 1.11 16 36 H 0.02 1.02 8.04 -2.39 -0.02 1.00 16 37 H 0.07 3.87 6.23 -2.39 -0.01 3.85 16 38 H 0.27 13.83 8.31 -92.71 -0.77 13.06 16 39 H 0.09 2.25 8.14 -2.39 -0.02 2.23 16 40 H 0.07 2.54 7.03 -2.39 -0.02 2.53 16 41 H 0.07 1.24 8.14 -2.39 -0.02 1.22 16 42 H 0.06 1.38 7.65 -2.39 -0.02 1.36 16 43 H 0.06 1.20 8.14 -2.38 -0.02 1.18 16 Total: -1.00 -65.76 338.35 4.30 -61.46 By element: Atomic # 1 Polarization: 13.69 SS G_CDS: 0.96 Total: 14.65 kcal Atomic # 6 Polarization: -7.48 SS G_CDS: 4.93 Total: -2.55 kcal Atomic # 7 Polarization: -73.09 SS G_CDS: -2.19 Total: -75.28 kcal Atomic # 8 Polarization: -42.06 SS G_CDS: -1.43 Total: -43.49 kcal Atomic # 14 Polarization: 43.20 SS G_CDS: 2.03 Total: 45.23 kcal Total: -65.76 4.30 -61.46 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000597722366.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -57.558 kcal (2) G-P(sol) polarization free energy of solvation -65.756 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -123.315 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.300 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.456 kcal (6) G-S(sol) free energy of system = (1) + (5) -119.015 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds