Wall clock time and date at job start Mon Mar 30 2020 01:22:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 O 1.42897 * 109.46981 * 2 1 4 4 C 1.42904 * 114.00068 * 179.97438 * 3 2 1 5 5 H 1.09009 * 109.44369 * 29.96983 * 4 3 2 6 6 C 1.53035 * 109.46070 * 270.00449 * 4 3 2 7 7 C 1.53192 * 109.34155 * 178.59554 * 6 4 3 8 8 N 1.46994 * 108.73575 * 54.62028 * 7 6 4 9 9 C 1.34775 * 120.61780 * 126.39162 * 8 7 6 10 10 O 1.21273 * 120.00444 * 175.40958 * 9 8 7 11 11 C 1.50704 * 119.99708 * 355.40589 * 9 8 7 12 12 H 1.09002 * 109.46732 * 35.43159 * 11 9 8 13 13 C 1.52997 * 109.47357 * 155.43329 * 11 9 8 14 14 C 1.50698 * 109.47369 * 275.43924 * 11 9 8 15 15 H 1.08009 * 119.99758 * 359.97438 * 14 11 9 16 16 C 1.37873 * 120.00181 * 180.02562 * 14 11 9 17 17 N 1.31511 * 120.00198 * 359.97438 * 16 14 11 18 18 Si 1.86804 * 119.99984 * 179.97438 * 16 14 11 19 19 H 1.48501 * 109.47091 * 60.00161 * 18 16 14 20 20 H 1.48504 * 109.47136 * 179.97438 * 18 16 14 21 21 H 1.48491 * 109.47296 * 300.00074 * 18 16 14 22 22 C 1.46929 * 118.75524 * 306.41236 * 8 7 6 23 23 C 1.53036 * 109.45859 * 149.93292 * 4 3 2 24 24 H 1.09004 * 109.50046 * 301.36980 * 23 4 3 25 25 C 1.53000 * 109.49660 * 61.43981 * 23 4 3 26 26 H 1.08998 * 109.47276 * 299.99763 * 1 2 3 27 27 H 1.09000 * 109.47366 * 59.99970 * 1 2 3 28 28 H 1.09004 * 109.47320 * 179.97438 * 1 2 3 29 29 H 1.09000 * 109.46777 * 240.00368 * 2 1 3 30 30 H 1.08994 * 109.47224 * 120.00731 * 2 1 3 31 31 H 1.09002 * 109.49901 * 298.56870 * 6 4 3 32 32 H 1.09004 * 109.50045 * 58.63034 * 6 4 3 33 33 H 1.08993 * 109.58940 * 174.43634 * 7 6 4 34 34 H 1.09000 * 109.58575 * 294.86974 * 7 6 4 35 35 H 1.08997 * 109.47047 * 185.16694 * 13 11 9 36 36 H 1.09000 * 109.47099 * 305.17365 * 13 11 9 37 37 H 1.08998 * 109.47113 * 65.16500 * 13 11 9 38 38 H 0.97004 * 120.00300 * 180.02562 * 17 16 14 39 39 H 1.08999 * 109.58625 * 293.82110 * 22 8 7 40 40 H 1.08999 * 109.58687 * 173.39584 * 22 8 7 41 41 H 1.08998 * 109.47347 * 59.99773 * 25 23 4 42 42 H 1.09006 * 109.47104 * 180.02562 * 25 23 4 43 43 H 1.09005 * 109.46799 * 299.99404 * 25 23 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0063 1.3473 0.0000 4 6 3.4309 1.4601 0.0006 5 1 3.8632 0.6010 -0.5126 6 6 3.9385 1.5005 1.4437 7 6 5.4681 1.5862 1.4413 8 7 5.8751 2.7390 0.6252 9 6 6.6967 3.6810 1.1293 10 8 7.0921 4.5827 0.4213 11 6 7.1239 3.6139 2.5730 12 1 7.2466 2.5715 2.8674 13 6 8.4524 4.3527 2.7466 14 6 6.0729 4.2598 3.4385 15 1 5.1845 4.6776 2.9882 16 6 6.2459 4.3183 4.8051 17 7 7.3278 3.8100 5.3534 18 14 4.9433 5.1196 5.8779 19 1 3.6539 4.4025 5.7099 20 1 5.3643 5.0533 7.3005 21 1 4.7761 6.5394 5.4764 22 6 5.3691 2.8454 -0.7501 23 6 3.8408 2.7452 -0.7224 24 1 3.4583 2.7263 -1.7430 25 6 3.2632 3.9536 0.0172 26 1 -0.3634 0.5138 0.8900 27 1 -0.3634 0.5138 -0.8900 28 1 -0.3634 -1.0277 -0.0005 29 1 1.8933 -0.5138 -0.8900 30 1 1.8934 -0.5139 0.8899 31 1 3.5260 2.3731 1.9502 32 1 3.6257 0.5957 1.9649 33 1 5.8285 1.7145 2.4619 34 1 5.8845 0.6728 1.0166 35 1 8.8073 4.2265 3.7695 36 1 9.1882 3.9448 2.0537 37 1 8.3080 5.4132 2.5404 38 1 7.4493 3.8509 6.3149 39 1 5.7776 2.0346 -1.3534 40 1 5.6648 3.8046 -1.1751 41 1 3.6467 3.9727 1.0373 42 1 3.5550 4.8687 -0.4983 43 1 2.1758 3.8804 0.0392 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000597722367.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:22:50 Heat of formation + Delta-G solvation = -114.610851 kcal Electronic energy + Delta-G solvation = -22291.707929 eV Core-core repulsion = 19142.722871 eV Total energy + Delta-G solvation = -3148.985058 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 269.178 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -41.36768 -39.60346 -37.48105 -35.87088 -34.17626 -32.63841 -32.17667 -31.33691 -28.09424 -27.19986 -26.00498 -24.23358 -23.88615 -23.25313 -20.72919 -19.54199 -18.43509 -18.27908 -17.43874 -16.92199 -16.48132 -16.21339 -16.08462 -15.93208 -15.11632 -14.82556 -14.59780 -14.31643 -13.95754 -13.73112 -13.51507 -13.34507 -13.09187 -12.96455 -12.83306 -12.77481 -12.67499 -12.59015 -12.33289 -12.17378 -12.12293 -12.01055 -11.94887 -11.57591 -11.29687 -11.08173 -10.60497 -10.40170 -10.17023 -9.49961 -8.16384 -6.29653 1.40668 1.42709 1.49420 1.90158 2.26504 2.44243 2.76224 3.13244 3.66242 3.78450 4.00798 4.11396 4.17355 4.22879 4.27303 4.40296 4.41352 4.54420 4.56870 4.63628 4.74544 4.75763 4.81394 4.88651 4.94245 4.95695 4.99002 5.07144 5.10699 5.13527 5.20111 5.23684 5.32654 5.45664 5.50513 5.64708 5.82898 5.86731 6.15528 6.38975 6.57978 6.72404 7.35633 7.48379 8.89312 Molecular weight = 269.18amu Principal moments of inertia in cm(-1) A = 0.017903 B = 0.006395 C = 0.005320 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1563.647559 B = 4377.672879 C = 5262.042697 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C 0.048 3.952 3 O -0.398 6.398 4 C 0.105 3.895 5 H 0.084 0.916 6 C -0.150 4.150 7 C 0.111 3.889 8 N -0.611 5.611 9 C 0.527 3.473 10 O -0.600 6.600 11 C 0.028 3.972 12 H 0.046 0.954 13 C -0.111 4.111 14 C -0.518 4.518 15 H 0.042 0.958 16 C 0.031 3.969 17 N -0.905 5.905 18 Si 0.950 3.050 19 H -0.268 1.268 20 H -0.277 1.277 21 H -0.281 1.281 22 C 0.114 3.886 23 C -0.093 4.093 24 H 0.104 0.896 25 C -0.136 4.136 26 H 0.051 0.949 27 H 0.059 0.941 28 H 0.089 0.911 29 H 0.062 0.938 30 H 0.052 0.948 31 H 0.053 0.947 32 H 0.088 0.912 33 H 0.084 0.916 34 H 0.090 0.910 35 H 0.070 0.930 36 H 0.022 0.978 37 H 0.018 0.982 38 H 0.266 0.734 39 H 0.090 0.910 40 H 0.072 0.928 41 H 0.034 0.966 42 H 0.042 0.958 43 H 0.062 0.938 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.532 -11.276 -9.946 18.358 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.028 4.028 3 O -0.318 6.318 4 C 0.048 3.952 5 H 0.102 0.898 6 C -0.188 4.188 7 C -0.011 4.011 8 N -0.343 5.343 9 C 0.319 3.681 10 O -0.482 6.482 11 C 0.007 3.993 12 H 0.064 0.936 13 C -0.169 4.169 14 C -0.556 4.556 15 H 0.060 0.940 16 C -0.170 4.170 17 N -0.543 5.543 18 Si 0.776 3.224 19 H -0.193 1.193 20 H -0.202 1.202 21 H -0.207 1.207 22 C -0.008 4.008 23 C -0.112 4.112 24 H 0.122 0.878 25 C -0.194 4.194 26 H 0.070 0.930 27 H 0.078 0.922 28 H 0.108 0.892 29 H 0.080 0.920 30 H 0.070 0.930 31 H 0.072 0.928 32 H 0.107 0.893 33 H 0.102 0.898 34 H 0.108 0.892 35 H 0.089 0.911 36 H 0.041 0.959 37 H 0.037 0.963 38 H 0.076 0.924 39 H 0.108 0.892 40 H 0.091 0.909 41 H 0.053 0.947 42 H 0.061 0.939 43 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges -10.367 -10.698 -10.137 18.019 hybrid contribution -0.262 0.629 0.912 1.139 sum -10.628 -10.069 -9.225 17.305 Atomic orbital electron populations 1.21752 0.93244 1.03190 1.02411 1.22704 0.96094 0.83183 1.00851 1.87922 1.20949 1.27785 1.95097 1.21983 0.81047 0.97640 0.94577 0.89793 1.22363 0.95186 1.03061 0.98234 1.21823 0.94617 0.87827 0.96839 1.48143 1.47684 1.24230 1.14244 1.21568 0.76523 0.79718 0.90321 1.90490 1.58392 1.36840 1.62453 1.18862 0.95160 0.98107 0.87188 0.93577 1.21444 0.96368 0.98066 1.01064 1.20749 1.04052 1.39223 0.91566 0.93981 1.25503 0.97356 0.95435 0.98700 1.69959 1.27156 1.45444 1.11784 0.85734 0.79855 0.78898 0.77951 1.19285 1.20197 1.20687 1.21685 0.92884 1.03192 0.83069 1.21533 0.94239 0.94584 1.00823 0.87795 1.21681 1.00815 0.97098 0.99767 0.92971 0.92208 0.89200 0.92020 0.92991 0.92813 0.89306 0.89791 0.89197 0.91113 0.95873 0.96305 0.92425 0.89161 0.90936 0.94652 0.93886 0.91862 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.27 10.28 71.98 0.74 -1.53 16 2 C 0.05 0.84 6.47 71.98 0.47 1.31 16 3 O -0.40 -9.68 9.37 -148.98 -1.40 -11.08 16 4 C 0.11 2.52 2.25 30.62 0.07 2.59 16 5 H 0.08 1.59 7.79 -2.38 -0.02 1.58 16 6 C -0.15 -4.23 5.35 30.67 0.16 -4.07 16 7 C 0.11 3.50 6.27 86.35 0.54 4.04 16 8 N -0.61 -22.56 2.41 -818.74 -1.97 -24.53 16 9 C 0.53 24.89 6.74 87.66 0.59 25.48 16 10 O -0.60 -31.67 15.62 -3.01 -0.05 -31.72 16 11 C 0.03 1.41 1.81 -12.29 -0.02 1.39 16 12 H 0.05 2.33 6.30 -2.39 -0.02 2.32 16 13 C -0.11 -5.78 8.33 71.98 0.60 -5.18 16 14 C -0.52 -28.17 8.36 25.60 0.21 -27.96 16 15 H 0.04 2.37 7.74 -2.91 -0.02 2.34 16 16 C 0.03 1.65 5.30 84.65 0.45 2.10 16 17 N -0.91 -49.69 11.38 21.45 0.24 -49.45 16 18 Si 0.95 42.98 29.54 68.60 2.03 45.01 16 19 H -0.27 -11.72 7.11 99.48 0.71 -11.01 16 20 H -0.28 -12.07 7.11 99.48 0.71 -11.36 16 21 H -0.28 -12.90 7.11 99.48 0.71 -12.20 16 22 C 0.11 3.43 5.82 86.36 0.50 3.94 16 23 C -0.09 -2.45 2.94 -10.72 -0.03 -2.48 16 24 H 0.10 2.28 8.14 -2.38 -0.02 2.26 16 25 C -0.14 -4.39 8.57 71.98 0.62 -3.77 16 26 H 0.05 0.90 8.14 -2.39 -0.02 0.88 16 27 H 0.06 0.92 8.14 -2.39 -0.02 0.90 16 28 H 0.09 0.96 8.14 -2.38 -0.02 0.94 16 29 H 0.06 0.88 8.08 -2.39 -0.02 0.86 16 30 H 0.05 0.87 7.84 -2.39 -0.02 0.85 16 31 H 0.05 1.88 6.34 -2.39 -0.02 1.87 16 32 H 0.09 2.13 7.85 -2.39 -0.02 2.11 16 33 H 0.08 3.15 5.36 -2.39 -0.01 3.14 16 34 H 0.09 2.21 8.14 -2.39 -0.02 2.19 16 35 H 0.07 3.82 6.22 -2.39 -0.01 3.81 16 36 H 0.02 1.08 8.14 -2.39 -0.02 1.06 16 37 H 0.02 0.99 8.04 -2.39 -0.02 0.97 16 38 H 0.27 13.90 8.31 -92.71 -0.77 13.13 16 39 H 0.09 2.15 8.14 -2.39 -0.02 2.13 16 40 H 0.07 2.52 7.03 -2.39 -0.02 2.50 16 41 H 0.03 1.36 5.97 -2.39 -0.01 1.35 16 42 H 0.04 1.40 8.14 -2.38 -0.02 1.38 16 43 H 0.06 1.91 7.72 -2.38 -0.02 1.89 16 Total: -1.00 -64.75 333.86 4.72 -60.02 By element: Atomic # 1 Polarization: 14.93 SS G_CDS: 0.97 Total: 15.90 kcal Atomic # 6 Polarization: -9.06 SS G_CDS: 4.90 Total: -4.16 kcal Atomic # 7 Polarization: -72.25 SS G_CDS: -1.73 Total: -73.98 kcal Atomic # 8 Polarization: -41.36 SS G_CDS: -1.44 Total: -42.80 kcal Atomic # 14 Polarization: 42.98 SS G_CDS: 2.03 Total: 45.01 kcal Total: -64.75 4.72 -60.02 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000597722367.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -54.588 kcal (2) G-P(sol) polarization free energy of solvation -64.746 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -119.334 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.723 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.023 kcal (6) G-S(sol) free energy of system = (1) + (5) -114.611 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds