Wall clock time and date at job start Mon Mar 30 2020 00:50:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 H 1.09010 * 109.47202 * 2 1 4 4 C 1.52998 * 109.47716 * 120.00219 * 2 1 3 5 5 O 1.42903 * 109.46707 * 293.96780 * 4 2 1 6 6 C 1.53003 * 109.47104 * 240.00396 * 2 1 3 7 7 H 1.08999 * 109.69870 * 53.97772 * 6 2 1 8 8 C 1.53193 * 109.58612 * 293.62161 * 6 2 1 9 9 C 1.53038 * 109.31011 * 185.57582 * 8 6 2 10 10 C 1.53036 * 109.53887 * 61.36997 * 9 8 6 11 11 C 1.53631 * 109.24129 * 298.50661 * 10 9 8 12 12 N 1.46923 * 109.58539 * 174.33011 * 6 2 1 13 13 C 1.34775 * 120.63420 * 353.37777 * 12 6 2 14 14 O 1.21281 * 119.99684 * 354.76900 * 13 12 6 15 15 C 1.50706 * 119.99908 * 175.04639 * 13 12 6 16 16 C 1.53002 * 109.46972 * 179.71994 * 15 13 12 17 17 C 1.50694 * 109.47317 * 179.97438 * 16 15 13 18 18 H 1.08003 * 119.99774 * 0.02562 * 17 16 15 19 19 C 1.37878 * 120.00415 * 179.97438 * 17 16 15 20 20 N 1.31515 * 119.99360 * 0.02562 * 19 17 16 21 21 Si 1.86793 * 120.00106 * 180.02562 * 19 17 16 22 22 H 1.48500 * 109.47158 * 90.00302 * 21 19 17 23 23 H 1.48502 * 109.47073 * 210.00129 * 21 19 17 24 24 H 1.48498 * 109.47493 * 330.00006 * 21 19 17 25 25 H 1.09002 * 109.47615 * 66.14311 * 1 2 3 26 26 H 1.09004 * 109.47283 * 186.14895 * 1 2 3 27 27 H 1.09007 * 109.47115 * 306.14424 * 1 2 3 28 28 H 1.08997 * 109.46897 * 53.96244 * 4 2 1 29 29 H 1.08998 * 109.47611 * 173.96353 * 4 2 1 30 30 H 0.96706 * 113.99627 * 179.97438 * 5 4 2 31 31 H 1.08997 * 109.49534 * 305.52994 * 8 6 2 32 32 H 1.09006 * 109.49198 * 65.62623 * 8 6 2 33 33 H 1.09004 * 109.45839 * 181.38950 * 9 8 6 34 34 H 1.08998 * 109.46368 * 301.35874 * 9 8 6 35 35 H 1.08997 * 109.50113 * 58.58318 * 10 9 8 36 36 H 1.09001 * 109.50083 * 178.64791 * 10 9 8 37 37 H 1.09001 * 109.73757 * 295.12094 * 11 10 9 38 38 H 1.08999 * 109.66459 * 174.55010 * 11 10 9 39 39 H 1.08995 * 109.47003 * 299.71928 * 15 13 12 40 40 H 1.08998 * 109.47292 * 59.72471 * 15 13 12 41 41 H 1.09004 * 109.47373 * 300.00408 * 16 15 13 42 42 H 1.09003 * 109.47143 * 59.99980 * 16 15 13 43 43 H 0.97007 * 119.99563 * 179.97438 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0401 -0.7213 1.2491 5 8 1.6829 0.0292 2.4116 6 6 2.0399 -0.7212 -1.2493 7 1 1.5934 -0.2761 -2.1385 8 6 1.6659 -2.2048 -1.1745 9 6 2.2970 -2.9460 -2.3553 10 6 3.8208 -2.8277 -2.2785 11 6 4.2189 -1.3467 -2.3693 12 7 3.5028 -0.6053 -1.3222 13 6 4.1746 0.1705 -0.4486 14 8 3.5664 0.8548 0.3468 15 6 5.6814 0.1924 -0.4643 16 6 6.1888 1.1518 0.6141 17 6 7.6955 1.1733 0.5989 18 1 8.2371 0.5638 -0.1095 19 6 8.3827 1.9716 1.4884 20 7 7.7232 2.7141 2.3506 21 14 10.2504 1.9987 1.4690 22 1 10.7204 3.0572 0.5396 23 1 10.7556 2.2808 2.8366 24 1 10.7599 0.6797 1.0154 25 1 -0.3634 0.4156 -0.9398 26 1 -0.3634 -1.0218 0.1101 27 1 -0.3634 0.6062 0.8299 28 1 1.5912 -1.7130 1.3048 29 1 3.1247 -0.8158 1.1967 30 1 1.9747 -0.3702 3.2426 31 1 2.0362 -2.6267 -0.2402 32 1 0.5817 -2.3092 -1.2169 33 1 2.0121 -3.9975 -2.3182 34 1 1.9455 -2.5074 -3.2892 35 1 4.1709 -3.2438 -1.3338 36 1 4.2706 -3.3760 -3.1063 37 1 3.9464 -0.9516 -3.3480 38 1 5.2937 -1.2458 -2.2185 39 1 6.0614 -0.8100 -0.2668 40 1 6.0298 0.5271 -1.4414 41 1 5.8088 2.1542 0.4167 42 1 5.8405 0.8171 1.5913 43 1 8.2067 3.2755 2.9768 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000598017746.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:50:22 Heat of formation + Delta-G solvation = -80.446513 kcal Electronic energy + Delta-G solvation = -22257.179982 eV Core-core repulsion = 19109.676401 eV Total energy + Delta-G solvation = -3147.503581 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 269.178 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -40.68126 -37.24961 -36.61995 -34.16123 -33.27170 -32.67871 -30.79834 -29.46459 -26.29529 -25.86484 -24.63611 -23.68146 -21.71398 -20.82010 -19.64701 -18.35992 -17.07400 -16.68008 -15.81052 -15.75714 -15.44634 -14.80443 -14.44088 -14.42267 -13.96428 -13.65237 -13.44879 -13.16844 -13.04463 -12.55698 -12.30885 -12.13109 -11.97762 -11.79608 -11.40019 -11.23415 -11.03118 -11.00456 -10.92247 -10.71339 -10.57897 -10.42921 -10.20401 -9.96215 -9.52674 -9.31077 -9.08469 -8.34745 -8.30466 -8.20873 -5.94949 -3.99389 3.20834 3.28517 3.33488 3.39883 3.42246 4.46537 4.51583 4.69215 4.73128 4.81021 4.99765 5.14135 5.26413 5.35280 5.39899 5.40686 5.47281 5.59813 5.62016 5.68619 5.75470 5.80384 5.87578 5.89038 5.96337 6.00110 6.10062 6.19665 6.21830 6.26186 6.32412 6.46615 6.66114 6.91122 7.03605 7.75550 7.81123 7.88222 8.08341 8.08749 8.40535 8.82057 9.09237 9.64101 11.15824 Molecular weight = 269.18amu Principal moments of inertia in cm(-1) A = 0.022109 B = 0.005262 C = 0.004478 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1266.130774 B = 5320.250050 C = 6251.681797 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.102 4.102 3 H 0.130 0.870 4 C 0.099 3.901 5 O -0.565 6.565 6 C 0.156 3.844 7 H 0.069 0.931 8 C -0.137 4.137 9 C -0.118 4.118 10 C -0.136 4.136 11 C 0.108 3.892 12 N -0.623 5.623 13 C 0.504 3.496 14 O -0.509 6.509 15 C -0.130 4.130 16 C 0.039 3.961 17 C -0.527 4.527 18 H 0.054 0.946 19 C 0.059 3.941 20 N -0.889 5.889 21 Si 0.891 3.109 22 H -0.281 1.281 23 H -0.286 1.286 24 H -0.274 1.274 25 H 0.048 0.952 26 H 0.044 0.956 27 H 0.061 0.939 28 H 0.019 0.981 29 H 0.053 0.947 30 H 0.370 0.630 31 H 0.069 0.931 32 H 0.072 0.928 33 H 0.061 0.939 34 H 0.062 0.938 35 H 0.067 0.933 36 H 0.072 0.928 37 H 0.064 0.936 38 H 0.092 0.908 39 H 0.076 0.924 40 H 0.077 0.923 41 H 0.023 0.977 42 H 0.022 0.978 43 H 0.261 0.739 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.211 -12.360 -9.440 19.773 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.120 4.120 3 H 0.147 0.853 4 C 0.021 3.979 5 O -0.369 6.369 6 C 0.052 3.948 7 H 0.087 0.913 8 C -0.175 4.175 9 C -0.156 4.156 10 C -0.174 4.174 11 C -0.015 4.015 12 N -0.359 5.359 13 C 0.295 3.705 14 O -0.385 6.385 15 C -0.170 4.170 16 C 0.002 3.998 17 C -0.565 4.565 18 H 0.073 0.927 19 C -0.143 4.143 20 N -0.527 5.527 21 Si 0.719 3.281 22 H -0.207 1.207 23 H -0.212 1.212 24 H -0.199 1.199 25 H 0.067 0.933 26 H 0.064 0.936 27 H 0.080 0.920 28 H 0.037 0.963 29 H 0.072 0.928 30 H 0.216 0.784 31 H 0.088 0.912 32 H 0.090 0.910 33 H 0.080 0.920 34 H 0.080 0.920 35 H 0.086 0.914 36 H 0.090 0.910 37 H 0.082 0.918 38 H 0.110 0.890 39 H 0.094 0.906 40 H 0.095 0.905 41 H 0.042 0.958 42 H 0.041 0.959 43 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges -12.764 -11.451 -9.308 19.511 hybrid contribution 1.313 -0.542 0.296 1.451 sum -11.451 -11.993 -9.012 18.872 Atomic orbital electron populations 1.21902 0.95999 1.01012 1.01385 1.21821 0.94173 1.04588 0.91458 0.85284 1.22365 0.98791 0.91264 0.85439 1.86461 1.81595 1.52771 1.16042 1.21198 0.80444 0.94894 0.98222 0.91300 1.22117 1.00677 0.95536 0.99194 1.21507 0.95437 1.00166 0.98473 1.22004 0.96240 0.96547 1.02637 1.21784 0.97976 0.90938 0.90779 1.48325 1.06312 1.48338 1.32938 1.21502 0.91479 0.78294 0.79183 1.90706 1.68415 1.40888 1.38449 1.21917 0.88625 1.03022 1.03451 1.18881 0.94794 0.93747 0.92405 1.21216 0.91668 1.25620 1.18041 0.92737 1.25015 0.98285 0.95517 0.95493 1.70003 1.35304 1.27107 1.20308 0.86615 0.85920 0.78293 0.77258 1.20679 1.21233 1.19927 0.93338 0.93647 0.92021 0.96272 0.92847 0.78439 0.91234 0.90974 0.91980 0.91968 0.91391 0.90970 0.91781 0.88983 0.90578 0.90506 0.95847 0.95916 0.92973 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.87 8.68 37.15 0.32 -1.55 16 2 C -0.10 -1.58 1.86 -90.62 -0.17 -1.75 16 3 H 0.13 2.51 5.63 -53.53 -0.30 2.21 16 4 C 0.10 1.61 4.53 37.16 0.17 1.78 16 5 O -0.56 -9.84 13.35 -36.37 -0.49 -10.32 16 6 C 0.16 2.04 2.65 -67.60 -0.18 1.86 16 7 H 0.07 0.85 8.14 -51.93 -0.42 0.42 16 8 C -0.14 -1.44 4.67 -26.61 -0.12 -1.57 16 9 C -0.12 -1.04 5.88 -26.69 -0.16 -1.20 16 10 C -0.14 -1.27 6.10 -26.38 -0.16 -1.43 16 11 C 0.11 1.22 6.38 -3.48 -0.02 1.20 16 12 N -0.62 -9.04 2.92 -164.95 -0.48 -9.52 16 13 C 0.50 9.53 6.19 -10.98 -0.07 9.46 16 14 O -0.51 -11.28 9.93 4.42 0.04 -11.24 16 15 C -0.13 -2.63 3.99 -27.88 -0.11 -2.74 16 16 C 0.04 1.05 4.26 -27.88 -0.12 0.93 16 17 C -0.53 -14.91 9.11 -34.44 -0.31 -15.23 16 18 H 0.05 1.46 7.74 -52.48 -0.41 1.05 16 19 C 0.06 1.70 5.46 -17.82 -0.10 1.61 16 20 N -0.89 -27.44 13.29 55.43 0.74 -26.70 16 21 Si 0.89 21.66 29.54 -169.99 -5.02 16.64 16 22 H -0.28 -6.72 7.11 56.52 0.40 -6.32 16 23 H -0.29 -6.92 7.11 56.52 0.40 -6.52 16 24 H -0.27 -6.45 7.11 56.52 0.40 -6.05 16 25 H 0.05 0.55 8.14 -51.93 -0.42 0.13 16 26 H 0.04 0.52 7.05 -51.93 -0.37 0.15 16 27 H 0.06 0.87 8.01 -51.93 -0.42 0.45 16 28 H 0.02 0.27 6.59 -51.93 -0.34 -0.07 16 29 H 0.05 1.00 5.23 -51.93 -0.27 0.73 16 30 H 0.37 4.96 9.12 45.56 0.42 5.37 16 31 H 0.07 0.81 6.16 -51.93 -0.32 0.49 16 32 H 0.07 0.68 7.05 -51.93 -0.37 0.31 16 33 H 0.06 0.48 8.14 -51.93 -0.42 0.06 16 34 H 0.06 0.51 8.14 -51.93 -0.42 0.09 16 35 H 0.07 0.70 8.14 -51.93 -0.42 0.28 16 36 H 0.07 0.54 8.14 -51.93 -0.42 0.12 16 37 H 0.06 0.64 8.14 -51.93 -0.42 0.21 16 38 H 0.09 1.05 5.93 -51.93 -0.31 0.75 16 39 H 0.08 1.42 7.92 -51.93 -0.41 1.01 16 40 H 0.08 1.44 7.72 -51.93 -0.40 1.04 16 41 H 0.02 0.69 8.10 -51.93 -0.42 0.27 16 42 H 0.02 0.66 8.10 -51.93 -0.42 0.24 16 43 H 0.26 7.57 8.31 -40.82 -0.34 7.23 16 LS Contribution 325.73 15.07 4.91 4.91 Total: -1.00 -33.46 325.73 -7.76 -41.22 By element: Atomic # 1 Polarization: 10.07 SS G_CDS: -6.43 Total: 3.64 kcal Atomic # 6 Polarization: -7.60 SS G_CDS: -1.03 Total: -8.64 kcal Atomic # 7 Polarization: -36.47 SS G_CDS: 0.25 Total: -36.22 kcal Atomic # 8 Polarization: -21.12 SS G_CDS: -0.44 Total: -21.56 kcal Atomic # 14 Polarization: 21.66 SS G_CDS: -5.02 Total: 16.64 kcal Total LS contribution 4.91 Total: 4.91 kcal Total: -33.46 -7.76 -41.22 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000598017746.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -39.224 kcal (2) G-P(sol) polarization free energy of solvation -33.464 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -72.688 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.758 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.222 kcal (6) G-S(sol) free energy of system = (1) + (5) -80.447 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds