Wall clock time and date at job start Mon Mar 30 2020 00:50:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 H 1.09010 * 109.47202 * 2 1 4 4 C 1.52998 * 109.47716 * 120.00219 * 2 1 3 5 5 O 1.42903 * 109.46707 * 293.96780 * 4 2 1 6 6 C 1.53003 * 109.47104 * 240.00396 * 2 1 3 7 7 H 1.08999 * 109.69870 * 53.97772 * 6 2 1 8 8 C 1.53193 * 109.58612 * 293.62161 * 6 2 1 9 9 C 1.53038 * 109.31011 * 185.57582 * 8 6 2 10 10 C 1.53036 * 109.53887 * 61.36997 * 9 8 6 11 11 C 1.53631 * 109.24129 * 298.50661 * 10 9 8 12 12 N 1.46923 * 109.58539 * 174.33011 * 6 2 1 13 13 C 1.34775 * 120.63420 * 353.37777 * 12 6 2 14 14 O 1.21281 * 119.99684 * 354.76900 * 13 12 6 15 15 C 1.50706 * 119.99908 * 175.04639 * 13 12 6 16 16 C 1.53002 * 109.46972 * 179.71994 * 15 13 12 17 17 C 1.50694 * 109.47317 * 179.97438 * 16 15 13 18 18 H 1.08003 * 119.99774 * 0.02562 * 17 16 15 19 19 C 1.37878 * 120.00415 * 179.97438 * 17 16 15 20 20 N 1.31515 * 119.99360 * 0.02562 * 19 17 16 21 21 Si 1.86793 * 120.00106 * 180.02562 * 19 17 16 22 22 H 1.48500 * 109.47158 * 90.00302 * 21 19 17 23 23 H 1.48502 * 109.47073 * 210.00129 * 21 19 17 24 24 H 1.48498 * 109.47493 * 330.00006 * 21 19 17 25 25 H 1.09002 * 109.47615 * 66.14311 * 1 2 3 26 26 H 1.09004 * 109.47283 * 186.14895 * 1 2 3 27 27 H 1.09007 * 109.47115 * 306.14424 * 1 2 3 28 28 H 1.08997 * 109.46897 * 53.96244 * 4 2 1 29 29 H 1.08998 * 109.47611 * 173.96353 * 4 2 1 30 30 H 0.96706 * 113.99627 * 179.97438 * 5 4 2 31 31 H 1.08997 * 109.49534 * 305.52994 * 8 6 2 32 32 H 1.09006 * 109.49198 * 65.62623 * 8 6 2 33 33 H 1.09004 * 109.45839 * 181.38950 * 9 8 6 34 34 H 1.08998 * 109.46368 * 301.35874 * 9 8 6 35 35 H 1.08997 * 109.50113 * 58.58318 * 10 9 8 36 36 H 1.09001 * 109.50083 * 178.64791 * 10 9 8 37 37 H 1.09001 * 109.73757 * 295.12094 * 11 10 9 38 38 H 1.08999 * 109.66459 * 174.55010 * 11 10 9 39 39 H 1.08995 * 109.47003 * 299.71928 * 15 13 12 40 40 H 1.08998 * 109.47292 * 59.72471 * 15 13 12 41 41 H 1.09004 * 109.47373 * 300.00408 * 16 15 13 42 42 H 1.09003 * 109.47143 * 59.99980 * 16 15 13 43 43 H 0.97007 * 119.99563 * 179.97438 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0401 -0.7213 1.2491 5 8 1.6829 0.0292 2.4116 6 6 2.0399 -0.7212 -1.2493 7 1 1.5934 -0.2761 -2.1385 8 6 1.6659 -2.2048 -1.1745 9 6 2.2970 -2.9460 -2.3553 10 6 3.8208 -2.8277 -2.2785 11 6 4.2189 -1.3467 -2.3693 12 7 3.5028 -0.6053 -1.3222 13 6 4.1746 0.1705 -0.4486 14 8 3.5664 0.8548 0.3468 15 6 5.6814 0.1924 -0.4643 16 6 6.1888 1.1518 0.6141 17 6 7.6955 1.1733 0.5989 18 1 8.2371 0.5638 -0.1095 19 6 8.3827 1.9716 1.4884 20 7 7.7232 2.7141 2.3506 21 14 10.2504 1.9987 1.4690 22 1 10.7204 3.0572 0.5396 23 1 10.7556 2.2808 2.8366 24 1 10.7599 0.6797 1.0154 25 1 -0.3634 0.4156 -0.9398 26 1 -0.3634 -1.0218 0.1101 27 1 -0.3634 0.6062 0.8299 28 1 1.5912 -1.7130 1.3048 29 1 3.1247 -0.8158 1.1967 30 1 1.9747 -0.3702 3.2426 31 1 2.0362 -2.6267 -0.2402 32 1 0.5817 -2.3092 -1.2169 33 1 2.0121 -3.9975 -2.3182 34 1 1.9455 -2.5074 -3.2892 35 1 4.1709 -3.2438 -1.3338 36 1 4.2706 -3.3760 -3.1063 37 1 3.9464 -0.9516 -3.3480 38 1 5.2937 -1.2458 -2.2185 39 1 6.0614 -0.8100 -0.2668 40 1 6.0298 0.5271 -1.4414 41 1 5.8088 2.1542 0.4167 42 1 5.8405 0.8171 1.5913 43 1 8.2067 3.2755 2.9768 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000598017746.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:50:21 Heat of formation + Delta-G solvation = -104.488276 kcal Electronic energy + Delta-G solvation = -22258.222511 eV Core-core repulsion = 19109.676401 eV Total energy + Delta-G solvation = -3148.546110 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 269.178 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -41.93559 -38.52582 -37.86030 -35.73377 -35.02248 -33.75289 -32.72554 -30.42475 -28.04778 -27.15160 -25.91809 -24.74292 -23.46292 -21.80311 -20.97057 -19.67697 -18.63116 -18.32198 -17.36331 -17.04838 -16.77671 -16.43248 -15.96073 -15.34519 -15.05816 -15.00837 -14.65376 -14.41547 -14.27889 -14.09889 -13.62473 -13.49625 -13.38294 -13.16040 -12.84502 -12.79162 -12.50257 -12.42062 -12.05530 -11.93245 -11.82200 -11.65738 -11.47880 -11.39625 -11.35332 -11.22674 -10.63270 -10.56251 -9.75762 -9.41014 -8.18153 -6.32503 1.40979 1.43818 1.54659 1.75784 2.09745 2.42752 3.14672 3.36425 3.71853 3.81787 3.94770 4.07820 4.17670 4.20552 4.28660 4.35423 4.43149 4.47548 4.51083 4.53391 4.67995 4.71365 4.84087 4.90521 4.95449 5.02276 5.03370 5.12588 5.15856 5.23466 5.25744 5.36723 5.46322 5.50113 5.52014 5.63586 5.83366 5.88275 6.17999 6.51298 6.86411 6.90379 7.37197 7.42080 8.94331 Molecular weight = 269.18amu Principal moments of inertia in cm(-1) A = 0.022109 B = 0.005262 C = 0.004478 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1266.130774 B = 5320.250050 C = 6251.681797 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C -0.103 4.103 3 H 0.082 0.918 4 C 0.102 3.898 5 O -0.588 6.588 6 C 0.154 3.846 7 H 0.085 0.915 8 C -0.131 4.131 9 C -0.114 4.114 10 C -0.131 4.131 11 C 0.098 3.902 12 N -0.612 5.612 13 C 0.501 3.499 14 O -0.553 6.553 15 C -0.118 4.118 16 C 0.049 3.951 17 C -0.543 4.543 18 H 0.074 0.926 19 C -0.006 4.006 20 N -0.937 5.937 21 Si 0.973 3.027 22 H -0.272 1.272 23 H -0.286 1.286 24 H -0.255 1.255 25 H 0.066 0.934 26 H 0.067 0.933 27 H 0.041 0.959 28 H 0.046 0.954 29 H 0.022 0.978 30 H 0.383 0.617 31 H 0.056 0.944 32 H 0.092 0.908 33 H 0.080 0.920 34 H 0.076 0.924 35 H 0.055 0.945 36 H 0.098 0.902 37 H 0.086 0.914 38 H 0.088 0.912 39 H 0.094 0.906 40 H 0.096 0.904 41 H -0.021 1.021 42 H -0.020 1.020 43 H 0.262 0.738 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.048 -14.950 -12.016 22.650 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C -0.122 4.122 3 H 0.100 0.900 4 C 0.025 3.975 5 O -0.394 6.394 6 C 0.052 3.948 7 H 0.103 0.897 8 C -0.169 4.169 9 C -0.152 4.152 10 C -0.169 4.169 11 C -0.024 4.024 12 N -0.347 5.347 13 C 0.291 3.709 14 O -0.432 6.432 15 C -0.157 4.157 16 C 0.011 3.989 17 C -0.581 4.581 18 H 0.092 0.908 19 C -0.203 4.203 20 N -0.577 5.577 21 Si 0.796 3.204 22 H -0.197 1.197 23 H -0.212 1.212 24 H -0.179 1.179 25 H 0.085 0.915 26 H 0.086 0.914 27 H 0.061 0.939 28 H 0.064 0.936 29 H 0.040 0.960 30 H 0.231 0.769 31 H 0.075 0.925 32 H 0.110 0.890 33 H 0.099 0.901 34 H 0.095 0.905 35 H 0.073 0.927 36 H 0.117 0.883 37 H 0.104 0.896 38 H 0.107 0.893 39 H 0.112 0.888 40 H 0.114 0.886 41 H -0.003 1.003 42 H -0.001 1.001 43 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges -12.610 -14.094 -11.933 22.362 hybrid contribution 1.209 0.270 1.102 1.658 sum -11.401 -13.824 -10.831 20.938 Atomic orbital electron populations 1.21808 0.93829 1.02167 1.01601 1.21674 0.95954 1.02128 0.92415 0.90000 1.22369 0.97136 0.92480 0.85529 1.86426 1.81716 1.54055 1.17247 1.21362 0.79163 0.96900 0.97415 0.89695 1.22088 1.02044 0.93124 0.99674 1.21515 0.94566 1.01073 0.98006 1.21993 0.97050 0.94809 1.03096 1.22128 0.97615 0.92200 0.90435 1.48280 1.07263 1.46958 1.32150 1.21190 0.90917 0.78909 0.79837 1.90743 1.68899 1.43038 1.40534 1.21648 0.90284 1.02025 1.01784 1.18622 0.94725 0.92923 0.92594 1.21705 0.92421 1.25681 1.18289 0.90831 1.26124 1.04459 0.94870 0.94855 1.70190 1.37890 1.28226 1.21415 0.85339 0.78416 0.79268 0.77337 1.19700 1.21161 1.17869 0.91542 0.91395 0.93932 0.93576 0.95967 0.76941 0.92515 0.88992 0.90143 0.90528 0.92655 0.88344 0.89576 0.89332 0.88799 0.88616 1.00252 1.00135 0.92904 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.37 8.68 71.98 0.62 -2.75 16 2 C -0.10 -3.23 1.86 -10.80 -0.02 -3.25 16 3 H 0.08 3.40 5.63 -27.75 -0.16 3.25 16 4 C 0.10 3.42 4.53 71.98 0.33 3.75 16 5 O -0.59 -21.64 13.35 -147.89 -1.97 -23.62 16 6 C 0.15 3.78 2.65 44.98 0.12 3.90 16 7 H 0.09 1.85 8.14 -2.39 -0.02 1.83 16 8 C -0.13 -2.34 4.67 30.67 0.14 -2.20 16 9 C -0.11 -1.50 5.88 30.62 0.18 -1.32 16 10 C -0.13 -1.97 6.10 30.82 0.19 -1.78 16 11 C 0.10 1.94 6.38 86.51 0.55 2.49 16 12 N -0.61 -17.23 2.92 -794.16 -2.32 -19.55 16 13 C 0.50 19.64 6.19 87.66 0.54 20.18 16 14 O -0.55 -26.38 9.93 -1.94 -0.02 -26.40 16 15 C -0.12 -4.87 3.99 29.85 0.12 -4.75 16 16 C 0.05 2.77 4.26 29.85 0.13 2.90 16 17 C -0.54 -31.33 9.11 25.60 0.23 -31.10 16 18 H 0.07 3.87 7.74 -2.91 -0.02 3.85 16 19 C -0.01 -0.33 5.46 84.65 0.46 0.13 16 20 N -0.94 -60.27 13.29 21.45 0.28 -59.99 16 21 Si 0.97 44.68 29.54 68.60 2.03 46.71 16 22 H -0.27 -12.02 7.11 99.48 0.71 -11.31 16 23 H -0.29 -13.00 7.11 99.48 0.71 -12.30 16 24 H -0.25 -10.84 7.11 99.48 0.71 -10.13 16 25 H 0.07 1.38 8.14 -2.39 -0.02 1.36 16 26 H 0.07 1.36 7.05 -2.38 -0.02 1.35 16 27 H 0.04 1.20 8.01 -2.38 -0.02 1.18 16 28 H 0.05 1.27 6.59 -2.39 -0.02 1.26 16 29 H 0.02 0.88 5.23 -2.39 -0.01 0.87 16 30 H 0.38 11.00 9.12 -74.05 -0.68 10.32 16 31 H 0.06 1.18 6.16 -2.39 -0.01 1.16 16 32 H 0.09 1.32 7.05 -2.38 -0.02 1.30 16 33 H 0.08 0.84 8.14 -2.39 -0.02 0.82 16 34 H 0.08 0.85 8.14 -2.39 -0.02 0.83 16 35 H 0.05 0.99 8.14 -2.39 -0.02 0.97 16 36 H 0.10 1.02 8.14 -2.39 -0.02 1.00 16 37 H 0.09 1.39 8.14 -2.39 -0.02 1.37 16 38 H 0.09 1.82 5.93 -2.39 -0.01 1.81 16 39 H 0.09 3.50 7.92 -2.39 -0.02 3.49 16 40 H 0.10 3.55 7.72 -2.39 -0.02 3.53 16 41 H -0.02 -1.35 8.10 -2.39 -0.02 -1.37 16 42 H -0.02 -1.27 8.10 -2.39 -0.02 -1.29 16 43 H 0.26 15.79 8.31 -92.70 -0.77 15.02 16 Total: -1.00 -78.23 325.73 1.77 -76.46 By element: Atomic # 1 Polarization: 19.99 SS G_CDS: 0.17 Total: 20.17 kcal Atomic # 6 Polarization: -17.38 SS G_CDS: 3.60 Total: -13.79 kcal Atomic # 7 Polarization: -77.50 SS G_CDS: -2.03 Total: -79.54 kcal Atomic # 8 Polarization: -48.02 SS G_CDS: -1.99 Total: -50.01 kcal Atomic # 14 Polarization: 44.68 SS G_CDS: 2.03 Total: 46.71 kcal Total: -78.23 1.77 -76.46 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000598017746.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -28.028 kcal (2) G-P(sol) polarization free energy of solvation -78.230 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -106.259 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.770 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.460 kcal (6) G-S(sol) free energy of system = (1) + (5) -104.488 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds