Wall clock time and date at job start Mon Mar 30 2020 00:50:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 H 1.09006 * 109.47103 * 2 1 4 4 C 1.53006 * 109.46938 * 240.00451 * 2 1 3 5 5 O 1.42893 * 109.47057 * 67.16374 * 4 2 1 6 6 C 1.52995 * 109.47412 * 120.00213 * 2 1 3 7 7 H 1.09002 * 109.58328 * 307.66337 * 6 2 1 8 8 C 1.53192 * 109.58679 * 67.94657 * 6 2 1 9 9 C 1.53038 * 109.31413 * 174.42495 * 8 6 2 10 10 C 1.53044 * 109.53610 * 298.63421 * 9 8 6 11 11 C 1.53194 * 109.30969 * 61.36709 * 10 9 8 12 12 N 1.46919 * 109.58796 * 187.23601 * 6 2 1 13 13 C 1.34775 * 120.63514 * 6.62712 * 12 6 2 14 14 O 1.21288 * 119.99417 * 357.80599 * 13 12 6 15 15 C 1.50698 * 120.00823 * 177.80076 * 13 12 6 16 16 C 1.52995 * 109.47393 * 180.02562 * 15 13 12 17 17 C 1.50697 * 109.46942 * 180.02562 * 16 15 13 18 18 H 1.08000 * 120.00424 * 0.02562 * 17 16 15 19 19 C 1.37885 * 120.00037 * 179.97438 * 17 16 15 20 20 N 1.31517 * 120.00028 * 180.02562 * 19 17 16 21 21 Si 1.86798 * 119.99787 * 0.02562 * 19 17 16 22 22 H 1.48499 * 109.47251 * 89.99836 * 21 19 17 23 23 H 1.48501 * 109.47111 * 210.00187 * 21 19 17 24 24 H 1.48505 * 109.47212 * 329.99684 * 21 19 17 25 25 H 1.08999 * 109.46749 * 304.77679 * 1 2 3 26 26 H 1.08993 * 109.46969 * 64.77557 * 1 2 3 27 27 H 1.09002 * 109.46784 * 184.77595 * 1 2 3 28 28 H 1.08997 * 109.46824 * 307.16289 * 4 2 1 29 29 H 1.09000 * 109.46786 * 187.16435 * 4 2 1 30 30 H 0.96700 * 114.00153 * 180.02562 * 5 4 2 31 31 H 1.09006 * 109.49855 * 294.37486 * 8 6 2 32 32 H 1.09004 * 109.49611 * 54.43831 * 8 6 2 33 33 H 1.09001 * 109.46308 * 58.65647 * 9 8 6 34 34 H 1.08997 * 109.46011 * 178.63036 * 9 8 6 35 35 H 1.09005 * 109.49670 * 181.31627 * 10 9 8 36 36 H 1.09000 * 109.49541 * 301.38144 * 10 9 8 37 37 H 1.08994 * 109.58986 * 65.15590 * 11 10 9 38 38 H 1.09008 * 109.58179 * 185.57514 * 11 10 9 39 39 H 1.09000 * 109.47153 * 300.00653 * 15 13 12 40 40 H 1.09005 * 109.46672 * 60.00045 * 15 13 12 41 41 H 1.09007 * 109.47167 * 300.00135 * 16 15 13 42 42 H 1.08997 * 109.47278 * 60.00026 * 16 15 13 43 43 H 0.96994 * 119.99700 * 180.02562 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0400 -0.7212 -1.2494 5 8 1.7058 0.0425 -2.4099 6 6 2.0401 -0.7213 1.2491 7 1 1.5703 -0.2941 2.1351 8 6 1.7004 -2.2121 1.1560 9 6 2.3328 -2.9502 2.3381 10 6 3.8546 -2.7971 2.2822 11 6 4.2186 -1.3128 2.3881 12 7 3.4989 -0.5736 1.3420 13 6 4.1643 0.2252 0.4844 14 8 3.5640 0.7994 -0.3994 15 6 5.6540 0.4051 0.6234 16 6 6.1570 1.3543 -0.4660 17 6 7.6468 1.5337 -0.3273 18 1 8.1816 1.0215 0.4589 19 6 8.3276 2.3508 -1.2049 20 7 9.6278 2.5070 -1.0841 21 14 7.4029 3.2361 -2.5652 22 1 6.9477 4.5612 -2.0732 23 1 8.3006 3.4234 -3.7333 24 1 6.2252 2.4274 -2.9708 25 1 -0.3633 0.5862 0.8441 26 1 -0.3633 0.4379 -0.9296 27 1 -0.3633 -1.0241 0.0856 28 1 1.5758 -1.7051 -1.3158 29 1 3.1225 -0.8335 -1.1876 30 1 1.9988 -0.3560 -3.2408 31 1 0.6184 -2.3412 1.1834 32 1 2.0915 -2.6167 0.2225 33 1 1.9595 -2.5284 3.2713 34 1 2.0724 -4.0074 2.2876 35 1 4.3058 -3.3425 3.1111 36 1 4.2259 -3.1969 1.3386 37 1 3.9287 -0.9345 3.3683 38 1 5.2928 -1.1893 2.2497 39 1 5.8794 0.8255 1.6035 40 1 6.1478 -0.5612 0.5203 41 1 5.9317 0.9343 -1.4463 42 1 5.6632 2.3205 -0.3625 43 1 10.1066 3.0821 -1.7012 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000598017747.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:50:24 Heat of formation + Delta-G solvation = -75.797916 kcal Electronic energy + Delta-G solvation = -22331.577488 eV Core-core repulsion = 19184.275486 eV Total energy + Delta-G solvation = -3147.302002 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 269.178 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -40.79641 -37.36713 -36.72582 -34.26092 -33.28457 -32.76821 -31.12945 -29.55932 -26.65510 -25.95408 -24.72207 -23.74310 -21.48508 -20.84423 -19.64995 -18.46715 -17.22922 -16.90907 -16.11573 -15.79676 -15.59630 -14.90657 -14.52959 -14.23154 -13.87103 -13.79277 -13.53473 -13.31467 -13.10403 -12.64312 -12.51329 -12.38585 -12.23360 -11.85505 -11.47473 -11.40527 -11.14559 -11.08269 -10.92270 -10.74980 -10.52338 -10.28754 -10.09673 -9.95126 -9.74555 -9.38731 -9.16631 -8.50606 -8.48584 -8.26657 -6.02330 -4.00907 3.07867 3.19149 3.39170 3.45764 3.57179 4.42172 4.52001 4.63470 4.66917 4.74819 4.94263 5.08020 5.20614 5.26769 5.31922 5.33475 5.38052 5.51990 5.56282 5.62297 5.68171 5.74558 5.82333 5.83453 5.90587 5.93812 6.02906 6.07411 6.10642 6.17751 6.25673 6.39582 6.54446 6.70909 6.92304 7.38553 7.45219 7.67750 7.81596 7.98961 8.51024 8.68462 9.00789 9.61034 11.10526 Molecular weight = 269.18amu Principal moments of inertia in cm(-1) A = 0.020943 B = 0.005894 C = 0.004851 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1336.658100 B = 4749.516734 C = 5770.445459 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.096 4.096 3 H 0.123 0.877 4 C 0.101 3.899 5 O -0.566 6.566 6 C 0.155 3.845 7 H 0.071 0.929 8 C -0.138 4.138 9 C -0.118 4.118 10 C -0.136 4.136 11 C 0.107 3.893 12 N -0.619 5.619 13 C 0.501 3.499 14 O -0.513 6.513 15 C -0.122 4.122 16 C 0.004 3.996 17 C -0.524 4.524 18 H 0.071 0.929 19 C 0.069 3.931 20 N -0.904 5.904 21 Si 0.877 3.123 22 H -0.277 1.277 23 H -0.289 1.289 24 H -0.260 1.260 25 H 0.048 0.952 26 H 0.062 0.938 27 H 0.046 0.954 28 H 0.018 0.982 29 H 0.057 0.943 30 H 0.369 0.631 31 H 0.072 0.928 32 H 0.069 0.931 33 H 0.062 0.938 34 H 0.062 0.938 35 H 0.073 0.927 36 H 0.067 0.933 37 H 0.065 0.935 38 H 0.093 0.907 39 H 0.083 0.917 40 H 0.082 0.918 41 H 0.022 0.978 42 H 0.019 0.981 43 H 0.263 0.737 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.844 -12.076 6.764 21.802 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.114 4.114 3 H 0.141 0.859 4 C 0.024 3.976 5 O -0.369 6.369 6 C 0.051 3.949 7 H 0.089 0.911 8 C -0.176 4.176 9 C -0.156 4.156 10 C -0.174 4.174 11 C -0.016 4.016 12 N -0.355 5.355 13 C 0.292 3.708 14 O -0.390 6.390 15 C -0.162 4.162 16 C -0.034 4.034 17 C -0.562 4.562 18 H 0.090 0.910 19 C -0.132 4.132 20 N -0.543 5.543 21 Si 0.704 3.296 22 H -0.203 1.203 23 H -0.215 1.215 24 H -0.185 1.185 25 H 0.067 0.933 26 H 0.081 0.919 27 H 0.065 0.935 28 H 0.036 0.964 29 H 0.075 0.925 30 H 0.214 0.786 31 H 0.091 0.909 32 H 0.088 0.912 33 H 0.081 0.919 34 H 0.081 0.919 35 H 0.092 0.908 36 H 0.086 0.914 37 H 0.083 0.917 38 H 0.111 0.889 39 H 0.101 0.899 40 H 0.100 0.900 41 H 0.041 0.959 42 H 0.037 0.963 43 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges -17.259 -11.267 6.664 21.661 hybrid contribution -0.049 -0.064 -0.943 0.947 sum -17.307 -11.331 5.720 21.463 Atomic orbital electron populations 1.21944 0.96044 1.00817 1.01863 1.21760 0.94057 1.04004 0.91599 0.85922 1.22382 0.98930 0.90978 0.85326 1.86451 1.82420 1.51902 1.16174 1.21208 0.80497 0.94920 0.98239 0.91144 1.22130 1.00801 0.95410 0.99241 1.21510 0.95437 1.00197 0.98456 1.21931 0.96328 0.96430 1.02752 1.21723 0.98027 0.91008 0.90806 1.48264 1.06710 1.47009 1.33523 1.21479 0.91114 0.77895 0.80340 1.90742 1.68105 1.47080 1.33027 1.21712 0.88839 1.02520 1.03097 1.19352 0.96297 0.94247 0.93534 1.21118 0.90761 1.28595 1.15758 0.91040 1.24969 0.94684 0.96127 0.97419 1.69913 1.07360 1.38934 1.38117 0.86799 0.80250 0.80671 0.81845 1.20272 1.21524 1.18467 0.93260 0.91916 0.93508 0.96426 0.92533 0.78551 0.90938 0.91210 0.91914 0.91921 0.90792 0.91407 0.91664 0.88860 0.89871 0.89972 0.95944 0.96289 0.92747 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.81 9.04 37.16 0.34 -1.48 16 2 C -0.10 -1.40 1.85 -90.62 -0.17 -1.57 16 3 H 0.12 2.25 5.74 -53.12 -0.30 1.95 16 4 C 0.10 1.55 4.36 37.16 0.16 1.71 16 5 O -0.57 -9.25 13.14 -43.43 -0.57 -9.83 16 6 C 0.15 1.90 2.64 -67.61 -0.18 1.72 16 7 H 0.07 0.81 8.14 -51.93 -0.42 0.39 16 8 C -0.14 -1.37 4.67 -26.61 -0.12 -1.49 16 9 C -0.12 -0.99 5.88 -26.69 -0.16 -1.14 16 10 C -0.14 -1.21 6.08 -26.61 -0.16 -1.37 16 11 C 0.11 1.15 6.34 -3.71 -0.02 1.13 16 12 N -0.62 -8.48 2.92 -165.23 -0.48 -8.97 16 13 C 0.50 8.90 6.52 -10.99 -0.07 8.83 16 14 O -0.51 -10.57 9.46 -2.65 -0.03 -10.60 16 15 C -0.12 -2.35 4.00 -27.89 -0.11 -2.46 16 16 C 0.00 0.09 3.33 -27.89 -0.09 0.00 16 17 C -0.52 -14.98 9.66 -34.44 -0.33 -15.31 16 18 H 0.07 2.13 7.99 -52.49 -0.42 1.71 16 19 C 0.07 2.05 5.47 -17.82 -0.10 1.96 16 20 N -0.90 -28.09 13.96 55.43 0.77 -27.32 16 21 Si 0.88 22.75 27.47 -169.99 -4.67 18.08 16 22 H -0.28 -7.11 7.11 56.52 0.40 -6.71 16 23 H -0.29 -7.35 7.11 56.52 0.40 -6.95 16 24 H -0.26 -6.72 6.54 56.52 0.37 -6.35 16 25 H 0.05 0.54 8.14 -51.93 -0.42 0.12 16 26 H 0.06 0.84 7.77 -51.93 -0.40 0.43 16 27 H 0.05 0.49 6.61 -51.93 -0.34 0.15 16 28 H 0.02 0.24 6.66 -51.93 -0.35 -0.11 16 29 H 0.06 0.99 5.30 -51.93 -0.28 0.72 16 30 H 0.37 4.55 9.12 45.56 0.42 4.96 16 31 H 0.07 0.64 6.84 -51.93 -0.36 0.28 16 32 H 0.07 0.77 6.17 -51.93 -0.32 0.45 16 33 H 0.06 0.49 8.14 -51.93 -0.42 0.06 16 34 H 0.06 0.46 8.14 -51.93 -0.42 0.04 16 35 H 0.07 0.54 8.14 -51.93 -0.42 0.11 16 36 H 0.07 0.67 8.14 -51.93 -0.42 0.25 16 37 H 0.07 0.61 8.14 -51.93 -0.42 0.19 16 38 H 0.09 1.03 5.95 -51.92 -0.31 0.72 16 39 H 0.08 1.51 8.03 -51.93 -0.42 1.09 16 40 H 0.08 1.48 7.60 -51.93 -0.39 1.08 16 41 H 0.02 0.58 7.16 -51.93 -0.37 0.21 16 42 H 0.02 0.49 7.53 -51.93 -0.39 0.10 16 43 H 0.26 7.67 8.31 -40.82 -0.34 7.33 16 LS Contribution 321.30 15.07 4.84 4.84 Total: -1.00 -33.54 321.30 -7.51 -41.05 By element: Atomic # 1 Polarization: 8.58 SS G_CDS: -6.36 Total: 2.22 kcal Atomic # 6 Polarization: -8.46 SS G_CDS: -1.02 Total: -9.48 kcal Atomic # 7 Polarization: -36.57 SS G_CDS: 0.29 Total: -36.28 kcal Atomic # 8 Polarization: -19.83 SS G_CDS: -0.60 Total: -20.42 kcal Atomic # 14 Polarization: 22.75 SS G_CDS: -4.67 Total: 18.08 kcal Total LS contribution 4.84 Total: 4.84 kcal Total: -33.54 -7.51 -41.05 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000598017747.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -34.749 kcal (2) G-P(sol) polarization free energy of solvation -33.535 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -68.284 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.514 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.049 kcal (6) G-S(sol) free energy of system = (1) + (5) -75.798 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds