Wall clock time and date at job start Mon Mar 30 2020 00:50:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 H 1.09006 * 109.47103 * 2 1 4 4 C 1.53006 * 109.46938 * 240.00451 * 2 1 3 5 5 O 1.42893 * 109.47057 * 67.16374 * 4 2 1 6 6 C 1.52995 * 109.47412 * 120.00213 * 2 1 3 7 7 H 1.09002 * 109.58328 * 307.66337 * 6 2 1 8 8 C 1.53192 * 109.58679 * 67.94657 * 6 2 1 9 9 C 1.53038 * 109.31413 * 174.42495 * 8 6 2 10 10 C 1.53044 * 109.53610 * 298.63421 * 9 8 6 11 11 C 1.53194 * 109.30969 * 61.36709 * 10 9 8 12 12 N 1.46919 * 109.58796 * 187.23601 * 6 2 1 13 13 C 1.34775 * 120.63514 * 6.62712 * 12 6 2 14 14 O 1.21288 * 119.99417 * 357.80599 * 13 12 6 15 15 C 1.50698 * 120.00823 * 177.80076 * 13 12 6 16 16 C 1.52995 * 109.47393 * 180.02562 * 15 13 12 17 17 C 1.50697 * 109.46942 * 180.02562 * 16 15 13 18 18 H 1.08000 * 120.00424 * 0.02562 * 17 16 15 19 19 C 1.37885 * 120.00037 * 179.97438 * 17 16 15 20 20 N 1.31517 * 120.00028 * 180.02562 * 19 17 16 21 21 Si 1.86798 * 119.99787 * 0.02562 * 19 17 16 22 22 H 1.48499 * 109.47251 * 89.99836 * 21 19 17 23 23 H 1.48501 * 109.47111 * 210.00187 * 21 19 17 24 24 H 1.48505 * 109.47212 * 329.99684 * 21 19 17 25 25 H 1.08999 * 109.46749 * 304.77679 * 1 2 3 26 26 H 1.08993 * 109.46969 * 64.77557 * 1 2 3 27 27 H 1.09002 * 109.46784 * 184.77595 * 1 2 3 28 28 H 1.08997 * 109.46824 * 307.16289 * 4 2 1 29 29 H 1.09000 * 109.46786 * 187.16435 * 4 2 1 30 30 H 0.96700 * 114.00153 * 180.02562 * 5 4 2 31 31 H 1.09006 * 109.49855 * 294.37486 * 8 6 2 32 32 H 1.09004 * 109.49611 * 54.43831 * 8 6 2 33 33 H 1.09001 * 109.46308 * 58.65647 * 9 8 6 34 34 H 1.08997 * 109.46011 * 178.63036 * 9 8 6 35 35 H 1.09005 * 109.49670 * 181.31627 * 10 9 8 36 36 H 1.09000 * 109.49541 * 301.38144 * 10 9 8 37 37 H 1.08994 * 109.58986 * 65.15590 * 11 10 9 38 38 H 1.09008 * 109.58179 * 185.57514 * 11 10 9 39 39 H 1.09000 * 109.47153 * 300.00653 * 15 13 12 40 40 H 1.09005 * 109.46672 * 60.00045 * 15 13 12 41 41 H 1.09007 * 109.47167 * 300.00135 * 16 15 13 42 42 H 1.08997 * 109.47278 * 60.00026 * 16 15 13 43 43 H 0.96994 * 119.99700 * 180.02562 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0400 -0.7212 -1.2494 5 8 1.7058 0.0425 -2.4099 6 6 2.0401 -0.7213 1.2491 7 1 1.5703 -0.2941 2.1351 8 6 1.7004 -2.2121 1.1560 9 6 2.3328 -2.9502 2.3381 10 6 3.8546 -2.7971 2.2822 11 6 4.2186 -1.3128 2.3881 12 7 3.4989 -0.5736 1.3420 13 6 4.1643 0.2252 0.4844 14 8 3.5640 0.7994 -0.3994 15 6 5.6540 0.4051 0.6234 16 6 6.1570 1.3543 -0.4660 17 6 7.6468 1.5337 -0.3273 18 1 8.1816 1.0215 0.4589 19 6 8.3276 2.3508 -1.2049 20 7 9.6278 2.5070 -1.0841 21 14 7.4029 3.2361 -2.5652 22 1 6.9477 4.5612 -2.0732 23 1 8.3006 3.4234 -3.7333 24 1 6.2252 2.4274 -2.9708 25 1 -0.3633 0.5862 0.8441 26 1 -0.3633 0.4379 -0.9296 27 1 -0.3633 -1.0241 0.0856 28 1 1.5758 -1.7051 -1.3158 29 1 3.1225 -0.8335 -1.1876 30 1 1.9988 -0.3560 -3.2408 31 1 0.6184 -2.3412 1.1834 32 1 2.0915 -2.6167 0.2225 33 1 1.9595 -2.5284 3.2713 34 1 2.0724 -4.0074 2.2876 35 1 4.3058 -3.3425 3.1111 36 1 4.2259 -3.1969 1.3386 37 1 3.9287 -0.9345 3.3683 38 1 5.2928 -1.1893 2.2497 39 1 5.8794 0.8255 1.6035 40 1 6.1478 -0.5612 0.5203 41 1 5.9317 0.9343 -1.4463 42 1 5.6632 2.3205 -0.3625 43 1 10.1066 3.0821 -1.7012 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000598017747.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:50:23 Heat of formation + Delta-G solvation = -99.372600 kcal Electronic energy + Delta-G solvation = -22332.599763 eV Core-core repulsion = 19184.275486 eV Total energy + Delta-G solvation = -3148.324278 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 269.178 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -41.96377 -38.55110 -37.86237 -35.73211 -35.01270 -33.78247 -33.05921 -30.45579 -28.36167 -27.11794 -25.87385 -24.72625 -23.14888 -21.81455 -20.94251 -19.77120 -18.92251 -18.33955 -17.48270 -16.98400 -16.82856 -16.30036 -15.93629 -15.42743 -15.09030 -14.98852 -14.90086 -14.51455 -14.35890 -14.21236 -13.75166 -13.47437 -13.41396 -13.31986 -12.95420 -12.79672 -12.47562 -12.11424 -11.97768 -11.89832 -11.82217 -11.78604 -11.55031 -11.44862 -11.34019 -11.29284 -10.79537 -10.58254 -9.81672 -9.38002 -8.33043 -6.35442 1.31116 1.33094 1.48544 1.72619 2.07869 2.33258 3.02888 3.37630 3.70991 3.81936 3.91760 4.06042 4.16917 4.20763 4.29998 4.34694 4.37714 4.44950 4.46256 4.55190 4.67595 4.70172 4.84033 4.90415 4.95872 4.97612 5.04146 5.13159 5.14036 5.23109 5.24799 5.33099 5.37793 5.44202 5.46806 5.50309 5.60434 5.84794 6.22773 6.48810 6.71041 6.93306 7.29967 7.36423 8.82747 Molecular weight = 269.18amu Principal moments of inertia in cm(-1) A = 0.020943 B = 0.005894 C = 0.004851 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1336.658100 B = 4749.516734 C = 5770.445459 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.097 4.097 3 H 0.081 0.919 4 C 0.104 3.896 5 O -0.588 6.588 6 C 0.153 3.847 7 H 0.086 0.914 8 C -0.132 4.132 9 C -0.114 4.114 10 C -0.132 4.132 11 C 0.098 3.902 12 N -0.610 5.610 13 C 0.500 3.500 14 O -0.548 6.548 15 C -0.115 4.115 16 C 0.011 3.989 17 C -0.528 4.528 18 H 0.049 0.951 19 C 0.016 3.984 20 N -0.943 5.943 21 Si 0.937 3.063 22 H -0.271 1.271 23 H -0.277 1.277 24 H -0.263 1.263 25 H 0.061 0.939 26 H 0.045 0.955 27 H 0.069 0.931 28 H 0.041 0.959 29 H 0.030 0.970 30 H 0.383 0.617 31 H 0.091 0.909 32 H 0.057 0.943 33 H 0.076 0.924 34 H 0.079 0.921 35 H 0.096 0.904 36 H 0.054 0.946 37 H 0.086 0.914 38 H 0.086 0.914 39 H 0.093 0.907 40 H 0.093 0.907 41 H 0.008 0.992 42 H 0.005 0.995 43 H 0.267 0.733 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.939 -13.640 7.941 24.654 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.115 4.115 3 H 0.099 0.901 4 C 0.027 3.973 5 O -0.394 6.394 6 C 0.051 3.949 7 H 0.104 0.896 8 C -0.170 4.170 9 C -0.152 4.152 10 C -0.170 4.170 11 C -0.024 4.024 12 N -0.344 5.344 13 C 0.290 3.710 14 O -0.427 6.427 15 C -0.154 4.154 16 C -0.027 4.027 17 C -0.566 4.566 18 H 0.067 0.933 19 C -0.182 4.182 20 N -0.584 5.584 21 Si 0.762 3.238 22 H -0.196 1.196 23 H -0.203 1.203 24 H -0.187 1.187 25 H 0.080 0.920 26 H 0.064 0.936 27 H 0.088 0.912 28 H 0.059 0.941 29 H 0.048 0.952 30 H 0.230 0.770 31 H 0.110 0.890 32 H 0.076 0.924 33 H 0.095 0.905 34 H 0.097 0.903 35 H 0.115 0.885 36 H 0.073 0.927 37 H 0.104 0.896 38 H 0.105 0.895 39 H 0.112 0.888 40 H 0.111 0.889 41 H 0.026 0.974 42 H 0.024 0.976 43 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges -19.362 -12.868 7.870 24.544 hybrid contribution 0.631 0.379 -1.249 1.450 sum -18.730 -12.489 6.622 23.466 Atomic orbital electron populations 1.21854 0.94077 1.02359 1.01541 1.21637 0.95673 1.01771 0.92464 0.90144 1.22368 0.97498 0.92011 0.85408 1.86415 1.82572 1.53075 1.17333 1.21370 0.79187 0.96735 0.97632 0.89578 1.22102 1.02111 0.93228 0.99585 1.21512 0.94475 1.01055 0.98128 1.21920 0.97229 0.94811 1.03061 1.22016 0.97509 0.92209 0.90631 1.48223 1.07626 1.45684 1.32818 1.21066 0.90318 0.78682 0.80928 1.90771 1.68416 1.48824 1.34679 1.21507 0.90727 1.01721 1.01484 1.19163 0.93815 0.94879 0.94833 1.21437 0.92648 1.27735 1.14770 0.93257 1.25764 0.95425 0.97150 0.99830 1.70019 1.08774 1.40132 1.39458 0.85848 0.78975 0.79536 0.79436 1.19605 1.20285 1.18706 0.92019 0.93607 0.91173 0.94074 0.95239 0.76979 0.89012 0.92432 0.90543 0.90258 0.88511 0.92692 0.89575 0.89541 0.88833 0.88869 0.97394 0.97633 0.92378 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.15 9.04 71.98 0.65 -2.50 16 2 C -0.10 -2.74 1.85 -10.79 -0.02 -2.76 16 3 H 0.08 3.02 5.74 -21.23 -0.12 2.89 16 4 C 0.10 3.15 4.36 71.98 0.31 3.46 16 5 O -0.59 -19.38 13.14 -141.14 -1.86 -21.24 16 6 C 0.15 3.42 2.64 44.97 0.12 3.54 16 7 H 0.09 1.70 8.14 -2.39 -0.02 1.68 16 8 C -0.13 -2.17 4.67 30.67 0.14 -2.02 16 9 C -0.11 -1.42 5.88 30.62 0.18 -1.24 16 10 C -0.13 -1.92 6.08 30.67 0.19 -1.74 16 11 C 0.10 1.86 6.34 86.36 0.55 2.41 16 12 N -0.61 -15.83 2.92 -795.04 -2.32 -18.15 16 13 C 0.50 17.81 6.52 87.66 0.57 18.38 16 14 O -0.55 -23.13 9.46 4.79 0.05 -23.08 16 15 C -0.11 -4.44 4.00 29.85 0.12 -4.33 16 16 C 0.01 0.56 3.33 29.85 0.10 0.66 16 17 C -0.53 -30.82 9.66 25.60 0.25 -30.58 16 18 H 0.05 3.02 7.99 -2.91 -0.02 3.00 16 19 C 0.02 0.96 5.47 84.66 0.46 1.43 16 20 N -0.94 -59.53 13.96 21.45 0.30 -59.23 16 21 Si 0.94 47.67 27.47 68.60 1.88 49.56 16 22 H -0.27 -13.42 7.11 99.48 0.71 -12.71 16 23 H -0.28 -13.49 7.11 99.48 0.71 -12.78 16 24 H -0.26 -13.36 6.54 99.48 0.65 -12.71 16 25 H 0.06 1.21 8.14 -2.39 -0.02 1.19 16 26 H 0.04 1.18 7.77 -2.39 -0.02 1.16 16 27 H 0.07 1.23 6.61 -2.39 -0.02 1.22 16 28 H 0.04 1.03 6.66 -2.39 -0.02 1.01 16 29 H 0.03 1.05 5.30 -2.39 -0.01 1.04 16 30 H 0.38 9.52 9.12 -74.06 -0.68 8.84 16 31 H 0.09 1.19 6.84 -2.38 -0.02 1.17 16 32 H 0.06 1.11 6.17 -2.39 -0.01 1.09 16 33 H 0.08 0.80 8.14 -2.39 -0.02 0.78 16 34 H 0.08 0.79 8.14 -2.39 -0.02 0.77 16 35 H 0.10 1.02 8.14 -2.38 -0.02 1.00 16 36 H 0.05 0.96 8.14 -2.39 -0.02 0.94 16 37 H 0.09 1.33 8.14 -2.39 -0.02 1.31 16 38 H 0.09 1.77 5.95 -2.38 -0.01 1.75 16 39 H 0.09 3.38 8.03 -2.39 -0.02 3.36 16 40 H 0.09 3.36 7.60 -2.38 -0.02 3.34 16 41 H 0.01 0.41 7.16 -2.38 -0.02 0.39 16 42 H 0.01 0.28 7.53 -2.39 -0.02 0.26 16 43 H 0.27 15.77 8.31 -92.71 -0.77 15.00 16 Total: -1.00 -74.26 321.30 1.83 -72.44 By element: Atomic # 1 Polarization: 14.84 SS G_CDS: 0.16 Total: 15.00 kcal Atomic # 6 Polarization: -18.91 SS G_CDS: 3.62 Total: -15.29 kcal Atomic # 7 Polarization: -75.36 SS G_CDS: -2.02 Total: -77.38 kcal Atomic # 8 Polarization: -42.51 SS G_CDS: -1.81 Total: -44.32 kcal Atomic # 14 Polarization: 47.67 SS G_CDS: 1.88 Total: 49.56 kcal Total: -74.26 1.83 -72.44 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000598017747.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -26.937 kcal (2) G-P(sol) polarization free energy of solvation -74.264 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -101.201 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.829 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.436 kcal (6) G-S(sol) free energy of system = (1) + (5) -99.373 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds