Wall clock time and date at job start Mon Mar 30 2020 01:24:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 O 1.42907 * 109.47189 * 2 1 4 4 C 1.42902 * 113.99835 * 175.32875 * 3 2 1 5 5 H 1.09004 * 109.47082 * 26.61896 * 4 3 2 6 6 C 1.50708 * 109.46770 * 146.61614 * 4 3 2 7 7 O 1.21284 * 119.99875 * 10.92503 * 6 4 3 8 8 N 1.34776 * 119.99708 * 190.93487 * 6 4 3 9 9 C 1.46497 * 120.00263 * 5.19335 * 8 6 4 10 10 C 1.50703 * 109.46812 * 94.40902 * 9 8 6 11 11 H 1.07999 * 119.99669 * 0.02562 * 10 9 8 12 12 C 1.37877 * 119.99591 * 179.97438 * 10 9 8 13 13 N 1.31512 * 120.00323 * 0.02562 * 12 10 9 14 14 Si 1.86808 * 119.99599 * 180.02562 * 12 10 9 15 15 H 1.48495 * 109.46906 * 60.00192 * 14 12 10 16 16 H 1.48497 * 109.46775 * 180.02562 * 14 12 10 17 17 H 1.48495 * 109.47108 * 300.00151 * 14 12 10 18 18 C 1.46507 * 119.99483 * 185.20415 * 8 6 4 19 19 C 1.53000 * 109.46777 * 298.43954 * 18 8 6 20 20 C 1.52993 * 109.47308 * 58.44480 * 18 8 6 21 21 C 1.52992 * 109.47183 * 266.61189 * 4 3 2 22 22 C 1.53002 * 117.50371 * 299.89233 * 21 4 3 23 23 C 1.53001 * 60.03316 * 107.47852 * 22 21 4 24 24 H 1.08998 * 109.47123 * 59.99880 * 1 2 3 25 25 H 1.09000 * 109.47192 * 180.02562 * 1 2 3 26 26 H 1.09001 * 109.46973 * 299.99759 * 1 2 3 27 27 H 1.08997 * 109.47662 * 240.00056 * 2 1 3 28 28 H 1.09008 * 109.47545 * 119.99813 * 2 1 3 29 29 H 1.08996 * 109.47094 * 214.40979 * 9 8 6 30 30 H 1.09001 * 109.47199 * 334.40953 * 9 8 6 31 31 H 0.96999 * 119.99775 * 179.97438 * 13 12 10 32 32 H 1.09004 * 109.46747 * 178.44789 * 18 8 6 33 33 H 1.09000 * 109.47069 * 66.10597 * 19 18 8 34 34 H 1.08997 * 109.46772 * 186.10501 * 19 18 8 35 35 H 1.09000 * 109.47648 * 306.10513 * 19 18 8 36 36 H 1.09000 * 109.47636 * 63.97081 * 20 18 8 37 37 H 1.09003 * 109.47334 * 183.97265 * 20 18 8 38 38 H 1.09002 * 109.47359 * 303.96539 * 20 18 8 39 39 H 1.09005 * 115.55159 * 154.22005 * 21 4 3 40 40 H 1.09000 * 117.50059 * 214.98146 * 22 21 4 41 41 H 1.09001 * 117.49504 * 359.97190 * 22 21 4 42 42 H 1.08995 * 117.49755 * 107.50293 * 23 22 21 43 43 H 1.08996 * 117.49773 * 252.52623 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 8 2.0063 1.3473 0.0000 4 6 3.4268 1.4616 0.1063 5 1 3.8947 0.5626 -0.2952 6 6 3.8940 2.6627 -0.6749 7 8 3.0864 3.4628 -1.0975 8 7 5.2092 2.8476 -0.9040 9 6 6.1750 1.8254 -0.4937 10 6 6.4565 0.9059 -1.6541 11 1 5.9654 1.0672 -2.6023 12 6 7.3418 -0.1406 -1.5053 13 7 7.9402 -0.3367 -0.3508 14 14 7.6912 -1.2800 -2.9439 15 1 8.2509 -0.4943 -4.0729 16 1 8.6702 -2.3162 -2.5280 17 1 6.4300 -1.9353 -3.3740 18 6 5.6729 4.0711 -1.5630 19 6 5.0683 4.1551 -2.9660 20 6 5.2356 5.2881 -0.7454 21 6 3.8166 1.6263 1.5766 22 6 3.2586 2.8393 2.3238 23 6 2.7163 1.4406 2.6245 24 1 -0.3633 0.5138 -0.8900 25 1 -0.3633 -1.0277 0.0005 26 1 -0.3633 0.5138 0.8900 27 1 1.8934 -0.5138 -0.8899 28 1 1.8934 -0.5138 0.8900 29 1 7.1009 2.3061 -0.1782 30 1 5.7641 1.2490 0.3352 31 1 8.5627 -1.0731 -0.2461 32 1 6.7603 4.0544 -1.6365 33 1 3.9883 4.2809 -2.8892 34 1 5.4964 5.0061 -3.4957 35 1 5.2893 3.2383 -3.5125 36 1 5.7223 5.2648 0.2296 37 1 5.5188 6.1999 -1.2712 38 1 4.1540 5.2667 -0.6121 39 1 4.8215 1.2936 1.8367 40 1 3.8962 3.3043 3.0757 41 1 2.6141 3.5202 1.7677 42 1 2.9972 0.9854 3.5742 43 1 1.7153 1.2011 2.2660 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000599234776.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:24:10 Heat of formation + Delta-G solvation = -62.578870 kcal Electronic energy + Delta-G solvation = -22495.124034 eV Core-core repulsion = 19348.395253 eV Total energy + Delta-G solvation = -3146.728782 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 269.178 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -39.84340 -37.89750 -35.67927 -35.18164 -33.18287 -31.69891 -30.94958 -27.45496 -26.78265 -26.55061 -23.05283 -22.70497 -22.04629 -21.59694 -20.43297 -18.06612 -16.68815 -16.55469 -16.16196 -15.92827 -14.88806 -14.66821 -14.44600 -14.38891 -13.77841 -13.41942 -12.97752 -12.63923 -12.44058 -12.24928 -12.13353 -12.00065 -11.82673 -11.51084 -11.40797 -11.14268 -11.04487 -10.94538 -10.87125 -10.80835 -10.61273 -10.38412 -10.22153 -10.02868 -9.90168 -9.66342 -9.30880 -8.62508 -8.43242 -7.64969 -6.20578 -4.28006 3.21955 3.27045 3.29063 3.42996 3.53098 4.06753 4.28762 4.49113 5.03007 5.11347 5.19236 5.26345 5.28823 5.39803 5.48109 5.59772 5.71261 5.73960 5.76850 5.88490 5.91945 5.96015 5.98741 6.08893 6.13890 6.18405 6.24363 6.25802 6.40256 6.47879 6.50386 6.51992 6.79153 6.84345 6.91049 7.17760 7.46686 7.68121 7.76014 8.04161 8.40556 8.79157 9.10387 9.40296 10.85626 Molecular weight = 269.18amu Principal moments of inertia in cm(-1) A = 0.013404 B = 0.007885 C = 0.006361 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2088.374966 B = 3550.017460 C = 4401.061901 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C 0.052 3.948 3 O -0.359 6.359 4 C 0.104 3.896 5 H 0.100 0.900 6 C 0.529 3.471 7 O -0.551 6.551 8 N -0.588 5.588 9 C 0.230 3.770 10 C -0.539 4.539 11 H 0.061 0.939 12 C 0.065 3.935 13 N -0.891 5.891 14 Si 0.895 3.105 15 H -0.275 1.275 16 H -0.286 1.286 17 H -0.276 1.276 18 C 0.151 3.849 19 C -0.164 4.164 20 C -0.166 4.166 21 C -0.171 4.171 22 C -0.168 4.168 23 C -0.171 4.171 24 H 0.062 0.938 25 H 0.067 0.933 26 H 0.060 0.940 27 H 0.049 0.951 28 H 0.051 0.949 29 H 0.034 0.966 30 H 0.045 0.955 31 H 0.266 0.734 32 H 0.083 0.917 33 H 0.072 0.928 34 H 0.049 0.951 35 H 0.056 0.944 36 H 0.049 0.951 37 H 0.054 0.946 38 H 0.073 0.927 39 H 0.123 0.877 40 H 0.089 0.911 41 H 0.096 0.904 42 H 0.089 0.911 43 H 0.100 0.900 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.610 2.532 3.456 8.733 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.025 4.025 3 O -0.277 6.277 4 C 0.043 3.957 5 H 0.118 0.882 6 C 0.315 3.685 7 O -0.430 6.430 8 N -0.321 5.321 9 C 0.111 3.889 10 C -0.578 4.578 11 H 0.079 0.921 12 C -0.138 4.138 13 N -0.529 5.529 14 Si 0.722 3.278 15 H -0.201 1.201 16 H -0.211 1.211 17 H -0.201 1.201 18 C 0.048 3.952 19 C -0.222 4.222 20 C -0.224 4.224 21 C -0.190 4.190 22 C -0.205 4.205 23 C -0.208 4.208 24 H 0.081 0.919 25 H 0.086 0.914 26 H 0.079 0.921 27 H 0.067 0.933 28 H 0.069 0.931 29 H 0.052 0.948 30 H 0.063 0.937 31 H 0.075 0.925 32 H 0.101 0.899 33 H 0.091 0.909 34 H 0.068 0.932 35 H 0.076 0.924 36 H 0.068 0.932 37 H 0.073 0.927 38 H 0.092 0.908 39 H 0.141 0.859 40 H 0.107 0.893 41 H 0.115 0.885 42 H 0.108 0.892 43 H 0.118 0.882 Dipole moment (debyes) X Y Z Total from point charges -7.997 2.985 3.320 9.159 hybrid contribution 0.773 -1.116 -0.737 1.545 sum -7.224 1.869 2.583 7.896 Atomic orbital electron populations 1.21709 0.94052 1.01748 1.02930 1.22564 0.95156 0.84377 1.00414 1.87941 1.19853 1.25663 1.94285 1.21375 0.82178 0.99015 0.93167 0.88237 1.19956 0.82471 0.86249 0.79779 1.90537 1.53909 1.46111 1.52482 1.48181 1.06271 1.19898 1.57704 1.19601 0.87666 0.85589 0.96087 1.21515 1.25920 1.12167 0.98196 0.92092 1.24933 0.95429 0.97420 0.95971 1.69905 1.28560 1.30997 1.23485 0.86599 0.78240 0.80347 0.82578 1.20084 1.21115 1.20124 1.20797 0.98612 0.83898 0.91929 1.22175 1.02791 1.01141 0.96059 1.22186 1.03577 0.97060 0.99586 1.22824 0.99456 1.04665 0.92026 1.22852 1.03612 0.91207 1.02867 1.22924 0.98892 1.00091 0.98868 0.91916 0.91417 0.92132 0.93290 0.93109 0.94814 0.93716 0.92468 0.89869 0.90931 0.93184 0.92442 0.93213 0.92668 0.90762 0.85922 0.89263 0.88505 0.89244 0.88203 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.77 10.28 37.16 0.38 -1.39 16 2 C 0.05 0.77 5.61 37.16 0.21 0.98 16 3 O -0.36 -6.64 8.30 -54.90 -0.46 -7.09 16 4 C 0.10 2.01 2.11 -27.88 -0.06 1.95 16 5 H 0.10 2.06 7.08 -51.93 -0.37 1.69 16 6 C 0.53 11.29 6.04 -10.98 -0.07 11.22 16 7 O -0.55 -12.66 12.83 -14.12 -0.18 -12.84 16 8 N -0.59 -12.46 2.41 -167.47 -0.40 -12.86 16 9 C 0.23 5.38 4.77 -5.19 -0.02 5.36 16 10 C -0.54 -13.89 9.39 -34.44 -0.32 -14.21 16 11 H 0.06 1.61 7.81 -52.49 -0.41 1.20 16 12 C 0.07 1.71 5.46 -17.82 -0.10 1.61 16 13 N -0.89 -24.06 13.29 55.43 0.74 -23.32 16 14 Si 0.89 20.41 29.54 -169.99 -5.02 15.39 16 15 H -0.28 -6.27 7.11 56.52 0.40 -5.87 16 16 H -0.29 -6.45 7.11 56.52 0.40 -6.05 16 17 H -0.28 -6.25 7.11 56.52 0.40 -5.85 16 18 C 0.15 2.88 3.28 -67.93 -0.22 2.66 16 19 C -0.16 -3.01 9.04 37.16 0.34 -2.68 16 20 C -0.17 -2.80 9.15 37.15 0.34 -2.46 16 21 C -0.17 -2.94 5.12 -90.58 -0.46 -3.40 16 22 C -0.17 -2.65 9.80 -26.73 -0.26 -2.91 16 23 C -0.17 -2.48 9.36 -26.69 -0.25 -2.73 16 24 H 0.06 0.79 8.14 -51.93 -0.42 0.36 16 25 H 0.07 0.65 8.14 -51.93 -0.42 0.23 16 26 H 0.06 0.70 8.14 -51.93 -0.42 0.27 16 27 H 0.05 0.74 8.14 -51.93 -0.42 0.32 16 28 H 0.05 0.70 7.42 -51.92 -0.39 0.31 16 29 H 0.03 0.83 8.00 -51.93 -0.42 0.42 16 30 H 0.05 1.05 4.35 -51.93 -0.23 0.82 16 31 H 0.27 6.86 8.31 -40.82 -0.34 6.52 16 32 H 0.08 1.57 7.84 -51.93 -0.41 1.16 16 33 H 0.07 1.44 6.31 -51.93 -0.33 1.11 16 34 H 0.05 0.77 8.14 -51.93 -0.42 0.35 16 35 H 0.06 1.13 8.14 -51.93 -0.42 0.71 16 36 H 0.05 0.81 8.14 -51.93 -0.42 0.38 16 37 H 0.05 0.79 8.14 -51.93 -0.42 0.37 16 38 H 0.07 1.39 6.13 -51.93 -0.32 1.07 16 39 H 0.12 2.20 6.59 -51.93 -0.34 1.86 16 40 H 0.09 1.26 8.14 -51.93 -0.42 0.84 16 41 H 0.10 1.68 8.14 -51.93 -0.42 1.26 16 42 H 0.09 1.13 8.14 -51.93 -0.42 0.71 16 43 H 0.10 1.45 6.21 -51.93 -0.32 1.12 16 LS Contribution 342.71 15.07 5.16 5.16 Total: -1.00 -28.26 342.71 -7.97 -36.23 By element: Atomic # 1 Polarization: 12.64 SS G_CDS: -7.31 Total: 5.33 kcal Atomic # 6 Polarization: -5.50 SS G_CDS: -0.50 Total: -6.00 kcal Atomic # 7 Polarization: -36.52 SS G_CDS: 0.33 Total: -36.18 kcal Atomic # 8 Polarization: -19.29 SS G_CDS: -0.64 Total: -19.93 kcal Atomic # 14 Polarization: 20.41 SS G_CDS: -5.02 Total: 15.39 kcal Total LS contribution 5.16 Total: 5.16 kcal Total: -28.26 -7.97 -36.23 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000599234776.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -26.350 kcal (2) G-P(sol) polarization free energy of solvation -28.259 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -54.609 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.970 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.228 kcal (6) G-S(sol) free energy of system = (1) + (5) -62.579 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds