Wall clock time and date at job start Mon Mar 30 2020 01:24:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 O 1.42907 * 109.47189 * 2 1 4 4 C 1.42902 * 113.99835 * 175.32875 * 3 2 1 5 5 H 1.09004 * 109.47082 * 26.61896 * 4 3 2 6 6 C 1.50708 * 109.46770 * 146.61614 * 4 3 2 7 7 O 1.21284 * 119.99875 * 10.92503 * 6 4 3 8 8 N 1.34776 * 119.99708 * 190.93487 * 6 4 3 9 9 C 1.46497 * 120.00263 * 5.19335 * 8 6 4 10 10 C 1.50703 * 109.46812 * 94.40902 * 9 8 6 11 11 H 1.07999 * 119.99669 * 0.02562 * 10 9 8 12 12 C 1.37877 * 119.99591 * 179.97438 * 10 9 8 13 13 N 1.31512 * 120.00323 * 0.02562 * 12 10 9 14 14 Si 1.86808 * 119.99599 * 180.02562 * 12 10 9 15 15 H 1.48495 * 109.46906 * 60.00192 * 14 12 10 16 16 H 1.48497 * 109.46775 * 180.02562 * 14 12 10 17 17 H 1.48495 * 109.47108 * 300.00151 * 14 12 10 18 18 C 1.46507 * 119.99483 * 185.20415 * 8 6 4 19 19 C 1.53000 * 109.46777 * 298.43954 * 18 8 6 20 20 C 1.52993 * 109.47308 * 58.44480 * 18 8 6 21 21 C 1.52992 * 109.47183 * 266.61189 * 4 3 2 22 22 C 1.53002 * 117.50371 * 299.89233 * 21 4 3 23 23 C 1.53001 * 60.03316 * 107.47852 * 22 21 4 24 24 H 1.08998 * 109.47123 * 59.99880 * 1 2 3 25 25 H 1.09000 * 109.47192 * 180.02562 * 1 2 3 26 26 H 1.09001 * 109.46973 * 299.99759 * 1 2 3 27 27 H 1.08997 * 109.47662 * 240.00056 * 2 1 3 28 28 H 1.09008 * 109.47545 * 119.99813 * 2 1 3 29 29 H 1.08996 * 109.47094 * 214.40979 * 9 8 6 30 30 H 1.09001 * 109.47199 * 334.40953 * 9 8 6 31 31 H 0.96999 * 119.99775 * 179.97438 * 13 12 10 32 32 H 1.09004 * 109.46747 * 178.44789 * 18 8 6 33 33 H 1.09000 * 109.47069 * 66.10597 * 19 18 8 34 34 H 1.08997 * 109.46772 * 186.10501 * 19 18 8 35 35 H 1.09000 * 109.47648 * 306.10513 * 19 18 8 36 36 H 1.09000 * 109.47636 * 63.97081 * 20 18 8 37 37 H 1.09003 * 109.47334 * 183.97265 * 20 18 8 38 38 H 1.09002 * 109.47359 * 303.96539 * 20 18 8 39 39 H 1.09005 * 115.55159 * 154.22005 * 21 4 3 40 40 H 1.09000 * 117.50059 * 214.98146 * 22 21 4 41 41 H 1.09001 * 117.49504 * 359.97190 * 22 21 4 42 42 H 1.08995 * 117.49755 * 107.50293 * 23 22 21 43 43 H 1.08996 * 117.49773 * 252.52623 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 8 2.0063 1.3473 0.0000 4 6 3.4268 1.4616 0.1063 5 1 3.8947 0.5626 -0.2952 6 6 3.8940 2.6627 -0.6749 7 8 3.0864 3.4628 -1.0975 8 7 5.2092 2.8476 -0.9040 9 6 6.1750 1.8254 -0.4937 10 6 6.4565 0.9059 -1.6541 11 1 5.9654 1.0672 -2.6023 12 6 7.3418 -0.1406 -1.5053 13 7 7.9402 -0.3367 -0.3508 14 14 7.6912 -1.2800 -2.9439 15 1 8.2509 -0.4943 -4.0729 16 1 8.6702 -2.3162 -2.5280 17 1 6.4300 -1.9353 -3.3740 18 6 5.6729 4.0711 -1.5630 19 6 5.0683 4.1551 -2.9660 20 6 5.2356 5.2881 -0.7454 21 6 3.8166 1.6263 1.5766 22 6 3.2586 2.8393 2.3238 23 6 2.7163 1.4406 2.6245 24 1 -0.3633 0.5138 -0.8900 25 1 -0.3633 -1.0277 0.0005 26 1 -0.3633 0.5138 0.8900 27 1 1.8934 -0.5138 -0.8899 28 1 1.8934 -0.5138 0.8900 29 1 7.1009 2.3061 -0.1782 30 1 5.7641 1.2490 0.3352 31 1 8.5627 -1.0731 -0.2461 32 1 6.7603 4.0544 -1.6365 33 1 3.9883 4.2809 -2.8892 34 1 5.4964 5.0061 -3.4957 35 1 5.2893 3.2383 -3.5125 36 1 5.7223 5.2648 0.2296 37 1 5.5188 6.1999 -1.2712 38 1 4.1540 5.2667 -0.6121 39 1 4.8215 1.2936 1.8367 40 1 3.8962 3.3043 3.0757 41 1 2.6141 3.5202 1.7677 42 1 2.9972 0.9854 3.5742 43 1 1.7153 1.2011 2.2660 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000599234776.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:24:09 Heat of formation + Delta-G solvation = -76.586783 kcal Electronic energy + Delta-G solvation = -22495.731463 eV Core-core repulsion = 19348.395253 eV Total energy + Delta-G solvation = -3147.336210 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 269.178 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -41.42242 -39.35833 -37.07732 -36.80044 -35.03886 -33.37651 -32.15788 -29.16863 -28.43663 -28.01165 -24.92744 -23.89500 -23.39964 -23.00381 -21.85277 -19.65832 -18.65277 -18.01535 -17.66566 -17.51968 -16.42763 -16.34859 -15.95080 -15.79870 -15.32818 -14.78969 -14.50530 -14.35601 -13.94866 -13.72801 -13.48809 -13.38407 -13.25405 -13.09500 -12.82709 -12.75392 -12.65733 -12.39758 -12.28331 -12.16746 -12.08549 -12.07796 -11.81472 -11.66278 -11.32444 -11.27883 -10.68326 -10.60343 -10.06213 -9.41038 -8.20959 -6.35368 1.40056 1.41034 1.48477 1.75446 2.02236 2.39159 2.77470 3.01428 3.08670 3.67618 3.76903 3.92461 4.08138 4.15423 4.25256 4.27799 4.31504 4.40849 4.44891 4.48639 4.53041 4.72168 4.76038 4.78796 4.84149 4.94837 4.96134 5.00101 5.02796 5.05185 5.13798 5.23606 5.27010 5.31292 5.33697 5.42638 5.67265 5.93031 6.05991 6.19296 6.59544 6.83216 7.32399 7.44617 8.83683 Molecular weight = 269.18amu Principal moments of inertia in cm(-1) A = 0.013404 B = 0.007885 C = 0.006361 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2088.374966 B = 3550.017460 C = 4401.061901 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C 0.043 3.957 3 O -0.375 6.375 4 C 0.110 3.890 5 H 0.078 0.922 6 C 0.523 3.477 7 O -0.570 6.570 8 N -0.590 5.590 9 C 0.245 3.755 10 C -0.551 4.551 11 H 0.048 0.952 12 C 0.026 3.974 13 N -0.915 5.915 14 Si 0.951 3.049 15 H -0.273 1.273 16 H -0.279 1.279 17 H -0.274 1.274 18 C 0.138 3.862 19 C -0.154 4.154 20 C -0.153 4.153 21 C -0.190 4.190 22 C -0.165 4.165 23 C -0.144 4.144 24 H 0.053 0.947 25 H 0.095 0.905 26 H 0.067 0.933 27 H 0.040 0.960 28 H 0.063 0.937 29 H 0.019 0.981 30 H 0.043 0.957 31 H 0.268 0.732 32 H 0.084 0.916 33 H 0.055 0.945 34 H 0.082 0.918 35 H 0.036 0.964 36 H 0.053 0.947 37 H 0.084 0.916 38 H 0.054 0.946 39 H 0.113 0.887 40 H 0.107 0.893 41 H 0.078 0.922 42 H 0.115 0.885 43 H 0.102 0.898 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.028 2.329 3.894 9.221 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.033 4.033 3 O -0.293 6.293 4 C 0.049 3.951 5 H 0.096 0.904 6 C 0.311 3.689 7 O -0.451 6.451 8 N -0.322 5.322 9 C 0.124 3.876 10 C -0.589 4.589 11 H 0.067 0.933 12 C -0.175 4.175 13 N -0.554 5.554 14 Si 0.776 3.224 15 H -0.199 1.199 16 H -0.204 1.204 17 H -0.199 1.199 18 C 0.035 3.965 19 C -0.212 4.212 20 C -0.211 4.211 21 C -0.209 4.209 22 C -0.202 4.202 23 C -0.181 4.181 24 H 0.072 0.928 25 H 0.114 0.886 26 H 0.086 0.914 27 H 0.058 0.942 28 H 0.081 0.919 29 H 0.037 0.963 30 H 0.061 0.939 31 H 0.078 0.922 32 H 0.102 0.898 33 H 0.074 0.926 34 H 0.101 0.899 35 H 0.055 0.945 36 H 0.072 0.928 37 H 0.103 0.897 38 H 0.073 0.927 39 H 0.130 0.870 40 H 0.125 0.875 41 H 0.097 0.903 42 H 0.134 0.866 43 H 0.120 0.880 Dipole moment (debyes) X Y Z Total from point charges -8.419 2.788 3.755 9.631 hybrid contribution 0.884 -1.037 -0.889 1.627 sum -7.536 1.751 2.866 8.250 Atomic orbital electron populations 1.21717 0.91626 1.03574 1.02820 1.22838 0.97070 0.82817 1.00618 1.87924 1.19020 1.27941 1.94445 1.21190 0.82759 0.96923 0.94246 0.90374 1.20358 0.82252 0.86727 0.79574 1.90517 1.54216 1.47062 1.53297 1.48197 1.06042 1.20183 1.57736 1.19294 0.87380 0.85587 0.95355 1.21676 1.25991 1.12935 0.98307 0.93331 1.25579 0.95219 0.98600 0.98125 1.69982 1.28970 1.31566 1.24873 0.85722 0.78134 0.78703 0.79845 1.19857 1.20361 1.19896 1.21075 0.98777 0.84009 0.92603 1.22076 1.01812 1.01488 0.95806 1.22065 1.02118 0.97131 0.99816 1.22666 0.99985 1.06927 0.91326 1.22837 1.03475 0.91255 1.02624 1.23024 0.97861 0.98637 0.98585 0.92798 0.88604 0.91437 0.94169 0.91858 0.96312 0.93882 0.92248 0.89786 0.92555 0.89913 0.94466 0.92808 0.89730 0.92709 0.86955 0.87513 0.90314 0.86648 0.87965 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.14 10.28 71.98 0.74 -2.40 16 2 C 0.04 1.24 5.61 71.98 0.40 1.65 16 3 O -0.37 -13.88 8.30 -130.17 -1.08 -14.96 16 4 C 0.11 4.35 2.11 29.85 0.06 4.41 16 5 H 0.08 3.36 7.08 -2.39 -0.02 3.35 16 6 C 0.52 22.83 6.04 87.66 0.53 23.36 16 7 O -0.57 -26.69 12.83 15.77 0.20 -26.49 16 8 N -0.59 -25.46 2.41 -802.13 -1.93 -27.40 16 9 C 0.24 11.70 4.77 85.63 0.41 12.10 16 10 C -0.55 -28.83 9.39 25.60 0.24 -28.59 16 11 H 0.05 2.62 7.81 -2.91 -0.02 2.60 16 12 C 0.03 1.34 5.46 84.65 0.46 1.80 16 13 N -0.92 -49.52 13.29 21.45 0.28 -49.23 16 14 Si 0.95 41.71 29.54 68.60 2.03 43.74 16 15 H -0.27 -11.84 7.11 99.48 0.71 -11.14 16 16 H -0.28 -11.85 7.11 99.48 0.71 -11.14 16 17 H -0.27 -11.85 7.11 99.48 0.71 -11.14 16 18 C 0.14 5.25 3.28 44.99 0.15 5.40 16 19 C -0.15 -5.63 9.04 71.98 0.65 -4.98 16 20 C -0.15 -5.03 9.15 71.98 0.66 -4.37 16 21 C -0.19 -6.50 5.12 -10.77 -0.06 -6.56 16 22 C -0.16 -5.03 9.80 30.60 0.30 -4.73 16 23 C -0.14 -3.91 9.36 30.62 0.29 -3.62 16 24 H 0.05 1.29 8.14 -2.39 -0.02 1.27 16 25 H 0.10 1.60 8.14 -2.39 -0.02 1.58 16 26 H 0.07 1.42 8.14 -2.39 -0.02 1.40 16 27 H 0.04 1.22 8.14 -2.39 -0.02 1.20 16 28 H 0.06 1.66 7.42 -2.38 -0.02 1.65 16 29 H 0.02 0.95 8.00 -2.39 -0.02 0.93 16 30 H 0.04 2.08 4.35 -2.39 -0.01 2.07 16 31 H 0.27 13.80 8.31 -92.71 -0.77 13.03 16 32 H 0.08 3.15 7.84 -2.38 -0.02 3.13 16 33 H 0.06 2.24 6.31 -2.39 -0.02 2.23 16 34 H 0.08 2.43 8.14 -2.39 -0.02 2.41 16 35 H 0.04 1.47 8.14 -2.39 -0.02 1.46 16 36 H 0.05 1.69 8.14 -2.39 -0.02 1.67 16 37 H 0.08 2.25 8.14 -2.39 -0.02 2.23 16 38 H 0.05 2.03 6.13 -2.39 -0.01 2.01 16 39 H 0.11 4.07 6.59 -2.38 -0.02 4.05 16 40 H 0.11 2.85 8.14 -2.39 -0.02 2.83 16 41 H 0.08 2.71 8.14 -2.39 -0.02 2.69 16 42 H 0.12 2.55 8.14 -2.39 -0.02 2.53 16 43 H 0.10 2.74 6.21 -2.39 -0.01 2.73 16 Total: -1.00 -60.54 342.71 5.31 -55.23 By element: Atomic # 1 Polarization: 24.65 SS G_CDS: 0.97 Total: 25.63 kcal Atomic # 6 Polarization: -11.35 SS G_CDS: 4.84 Total: -6.52 kcal Atomic # 7 Polarization: -74.98 SS G_CDS: -1.65 Total: -76.63 kcal Atomic # 8 Polarization: -40.58 SS G_CDS: -0.88 Total: -41.45 kcal Atomic # 14 Polarization: 41.71 SS G_CDS: 2.03 Total: 43.74 kcal Total: -60.54 5.31 -55.23 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000599234776.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -21.353 kcal (2) G-P(sol) polarization free energy of solvation -60.544 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -81.897 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.310 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -55.234 kcal (6) G-S(sol) free energy of system = (1) + (5) -76.587 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds