Wall clock time and date at job start Mon Mar 30 2020 01:24:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 O 1.42899 * 109.47165 * 2 1 4 4 C 1.42895 * 113.99811 * 185.12471 * 3 2 1 5 5 H 1.08997 * 109.47487 * 337.30342 * 4 3 2 6 6 C 1.50700 * 109.47161 * 217.30697 * 4 3 2 7 7 O 1.21284 * 119.99921 * 354.99651 * 6 4 3 8 8 N 1.34779 * 120.00171 * 175.00009 * 6 4 3 9 9 C 1.46502 * 119.99886 * 179.97438 * 8 6 4 10 10 C 1.52997 * 109.46988 * 180.02562 * 9 8 6 11 11 C 1.52999 * 109.47030 * 299.99992 * 10 9 8 12 12 C 1.53007 * 109.47178 * 59.99991 * 10 9 8 13 13 C 1.50700 * 109.47272 * 180.02562 * 10 9 8 14 14 H 1.08004 * 119.99329 * 359.97438 * 13 10 9 15 15 C 1.37872 * 120.00484 * 179.97438 * 13 10 9 16 16 N 1.31524 * 119.99807 * 359.97438 * 15 13 10 17 17 Si 1.86793 * 120.00330 * 180.02562 * 15 13 10 18 18 H 1.48499 * 109.47356 * 90.00161 * 17 15 13 19 19 H 1.48500 * 109.47250 * 210.00042 * 17 15 13 20 20 H 1.48500 * 109.47108 * 329.99643 * 17 15 13 21 21 C 1.53001 * 109.47399 * 97.30602 * 4 3 2 22 22 C 1.53004 * 117.51569 * 347.00030 * 21 4 3 23 23 C 1.52996 * 60.00001 * 107.48034 * 22 21 4 24 24 H 1.08997 * 109.46946 * 60.00654 * 1 2 3 25 25 H 1.09003 * 109.46894 * 180.02562 * 1 2 3 26 26 H 1.08995 * 109.47387 * 300.00686 * 1 2 3 27 27 H 1.08995 * 109.47387 * 239.99314 * 2 1 3 28 28 H 1.09005 * 109.46863 * 119.99708 * 2 1 3 29 29 H 0.97003 * 119.99812 * 0.02562 * 8 6 4 30 30 H 1.09008 * 109.46805 * 300.00096 * 9 8 6 31 31 H 1.08998 * 109.47123 * 59.99807 * 9 8 6 32 32 H 1.09003 * 109.47365 * 60.00172 * 11 10 9 33 33 H 1.09006 * 109.47252 * 180.02562 * 11 10 9 34 34 H 1.08992 * 109.47242 * 299.99789 * 11 10 9 35 35 H 1.08997 * 109.46766 * 59.99818 * 12 10 9 36 36 H 1.08996 * 109.46893 * 180.02562 * 12 10 9 37 37 H 1.08996 * 109.46531 * 300.00042 * 12 10 9 38 38 H 0.96993 * 120.00266 * 179.97438 * 16 15 13 39 39 H 1.09003 * 115.55126 * 201.29423 * 21 4 3 40 40 H 1.09002 * 117.49133 * 214.97007 * 22 21 4 41 41 H 1.08997 * 117.50016 * 359.97438 * 22 21 4 42 42 H 1.09000 * 117.49658 * 252.50667 * 23 22 21 43 43 H 1.08997 * 117.50320 * 107.49270 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0064 1.3473 0.0000 4 6 3.4259 1.4618 -0.1166 5 1 3.8937 0.5345 0.2142 6 6 3.9101 2.6024 0.7411 7 8 3.1107 3.3099 1.3169 8 7 5.2313 2.8363 0.8685 9 6 5.7018 3.9455 1.7019 10 6 7.2309 3.9905 1.6750 11 6 7.7895 2.6731 2.2165 12 6 7.7099 4.1947 0.2363 13 6 7.7150 5.1311 2.5328 14 1 7.0031 5.7611 3.0455 15 6 9.0665 5.3704 2.6632 16 7 9.9334 4.6028 2.0393 17 14 9.6665 6.7836 3.7270 18 1 9.8697 6.3047 5.1179 19 1 10.9511 7.2982 3.1881 20 1 8.6559 7.8717 3.7207 21 6 3.7980 1.7280 -1.5766 22 6 2.7105 1.5195 -2.6325 23 6 3.1542 2.9357 -2.2607 24 1 -0.3633 0.5137 -0.8900 25 1 -0.3633 -1.0277 0.0005 26 1 -0.3634 0.5139 0.8899 27 1 1.8934 -0.5139 -0.8899 28 1 1.8933 -0.5138 0.8901 29 1 5.8705 2.2707 0.4076 30 1 5.3041 4.8841 1.3158 31 1 5.3601 3.8003 2.7267 32 1 7.4394 1.8478 1.5964 33 1 8.8789 2.7053 2.1978 34 1 7.4482 2.5277 3.2414 35 1 7.3119 5.1332 -0.1494 36 1 8.7993 4.2263 0.2172 37 1 7.3598 3.3694 -0.3837 38 1 10.8842 4.7713 2.1306 39 1 4.8226 1.4797 -1.8535 40 1 3.0198 1.1340 -3.6040 41 1 1.7299 1.1921 -2.2872 42 1 2.4654 3.5403 -1.6708 43 1 3.7553 3.4820 -2.9876 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000600001583.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:24:08 Heat of formation + Delta-G solvation = -69.087924 kcal Electronic energy + Delta-G solvation = -21561.804727 eV Core-core repulsion = 18414.793691 eV Total energy + Delta-G solvation = -3147.011035 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 269.178 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -39.96480 -38.05931 -36.22375 -36.04610 -33.23555 -31.54344 -30.86979 -28.10383 -25.72715 -25.48601 -24.56179 -23.10774 -22.28130 -21.40594 -19.78576 -18.80626 -17.23719 -16.80495 -16.48216 -15.78621 -15.00665 -14.90020 -14.72057 -14.51846 -13.99410 -13.49581 -12.95651 -12.84681 -12.68026 -12.46378 -12.28229 -12.16554 -11.59958 -11.39714 -11.32907 -11.26402 -11.17775 -10.85654 -10.69231 -10.56760 -10.41102 -10.38140 -10.18747 -9.79234 -9.63149 -9.41035 -9.01514 -8.77181 -8.43883 -8.28796 -6.01987 -4.11898 3.01948 3.19738 3.28668 3.35673 3.40296 3.68479 4.18377 4.41373 4.58048 4.82750 4.88842 4.93656 5.04736 5.20746 5.24819 5.25756 5.30766 5.36311 5.53287 5.64185 5.75907 5.87397 5.95960 6.10605 6.22316 6.23853 6.34340 6.51106 6.79279 6.82318 6.92066 7.02212 7.02472 7.10644 7.36241 7.55713 7.69683 8.01082 8.06955 8.16945 8.39044 8.74144 8.89038 9.53922 10.99420 Molecular weight = 269.18amu Principal moments of inertia in cm(-1) A = 0.034368 B = 0.004063 C = 0.003917 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 814.504579 B = 6890.374157 C = 7146.999050 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C 0.052 3.948 3 O -0.353 6.353 4 C 0.103 3.897 5 H 0.087 0.913 6 C 0.509 3.491 7 O -0.533 6.533 8 N -0.712 5.712 9 C 0.134 3.866 10 C 0.056 3.944 11 C -0.131 4.131 12 C -0.129 4.129 13 C -0.505 4.505 14 H 0.057 0.943 15 C 0.066 3.934 16 N -0.886 5.886 17 Si 0.893 3.107 18 H -0.281 1.281 19 H -0.287 1.287 20 H -0.274 1.274 21 C -0.181 4.181 22 C -0.168 4.168 23 C -0.162 4.162 24 H 0.062 0.938 25 H 0.069 0.931 26 H 0.064 0.936 27 H 0.051 0.949 28 H 0.048 0.952 29 H 0.397 0.603 30 H 0.055 0.945 31 H 0.054 0.946 32 H 0.005 0.995 33 H 0.086 0.914 34 H 0.026 0.974 35 H 0.026 0.974 36 H 0.085 0.915 37 H 0.006 0.994 38 H 0.260 0.740 39 H 0.117 0.883 40 H 0.092 0.908 41 H 0.101 0.899 42 H 0.100 0.900 43 H 0.094 0.906 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.118 -10.556 -8.220 17.396 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.025 4.025 3 O -0.270 6.270 4 C 0.041 3.959 5 H 0.104 0.896 6 C 0.293 3.707 7 O -0.410 6.410 8 N -0.365 5.365 9 C 0.011 3.989 10 C 0.055 3.945 11 C -0.188 4.188 12 C -0.187 4.187 13 C -0.544 4.544 14 H 0.076 0.924 15 C -0.135 4.135 16 N -0.525 5.525 17 Si 0.721 3.279 18 H -0.207 1.207 19 H -0.213 1.213 20 H -0.199 1.199 21 C -0.200 4.200 22 C -0.205 4.205 23 C -0.199 4.199 24 H 0.081 0.919 25 H 0.088 0.912 26 H 0.084 0.916 27 H 0.069 0.931 28 H 0.067 0.933 29 H 0.232 0.768 30 H 0.073 0.927 31 H 0.072 0.928 32 H 0.024 0.976 33 H 0.104 0.896 34 H 0.045 0.955 35 H 0.046 0.954 36 H 0.104 0.896 37 H 0.025 0.975 38 H 0.070 0.930 39 H 0.135 0.865 40 H 0.110 0.890 41 H 0.119 0.881 42 H 0.118 0.882 43 H 0.113 0.887 Dipole moment (debyes) X Y Z Total from point charges -11.624 -9.884 -7.793 17.132 hybrid contribution 0.961 0.212 0.330 1.038 sum -10.662 -9.671 -7.462 16.215 Atomic orbital electron populations 1.21723 0.93623 1.02026 1.03324 1.22619 0.95762 0.83982 1.00137 1.88030 1.18973 1.25933 1.94105 1.21380 0.83392 0.98022 0.93129 0.89560 1.20219 0.83155 0.85617 0.81747 1.90680 1.54493 1.48587 1.47234 1.46208 1.05782 1.34167 1.50302 1.21717 0.97395 0.86936 0.92818 1.18358 0.87137 0.94902 0.94082 1.21831 1.04550 0.95061 0.97390 1.21814 1.04409 0.96689 0.95808 1.20993 0.91809 1.13084 1.28509 0.92438 1.24875 0.96745 0.96308 0.95576 1.69804 1.01702 1.38302 1.42690 0.86571 0.78160 0.82610 0.80539 1.20724 1.21281 1.19890 1.22697 0.98820 1.06206 0.92285 1.22930 0.99144 1.00283 0.98109 1.22887 1.03319 0.90869 1.02852 0.91904 0.91191 0.91644 0.93072 0.93324 0.76832 0.92708 0.92758 0.97554 0.89583 0.95455 0.95433 0.89648 0.97509 0.93032 0.86529 0.88981 0.88106 0.88188 0.88735 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.33 10.28 37.16 0.38 -0.94 16 2 C 0.05 0.54 5.63 37.16 0.21 0.75 16 3 O -0.35 -5.06 8.24 -55.09 -0.45 -5.51 16 4 C 0.10 1.42 2.97 -27.88 -0.08 1.34 16 5 H 0.09 1.00 7.74 -51.93 -0.40 0.59 16 6 C 0.51 9.21 6.94 -10.98 -0.08 9.14 16 7 O -0.53 -11.93 16.51 -14.31 -0.24 -12.17 16 8 N -0.71 -12.80 4.92 -60.29 -0.30 -13.09 16 9 C 0.13 2.87 4.50 -4.04 -0.02 2.85 16 10 C 0.06 1.29 0.50 -155.66 -0.08 1.21 16 11 C -0.13 -2.92 8.08 37.16 0.30 -2.62 16 12 C -0.13 -2.89 8.08 37.16 0.30 -2.59 16 13 C -0.51 -13.26 8.01 -34.44 -0.28 -13.53 16 14 H 0.06 1.53 7.74 -52.48 -0.41 1.12 16 15 C 0.07 1.74 5.15 -17.82 -0.09 1.64 16 16 N -0.89 -23.52 9.35 55.43 0.52 -23.00 16 17 Si 0.89 20.75 29.54 -169.99 -5.02 15.72 16 18 H -0.28 -6.53 7.11 56.52 0.40 -6.13 16 19 H -0.29 -6.64 7.11 56.52 0.40 -6.24 16 20 H -0.27 -6.38 7.11 56.52 0.40 -5.98 16 21 C -0.18 -2.17 5.76 -90.62 -0.52 -2.69 16 22 C -0.17 -1.76 9.56 -26.73 -0.26 -2.01 16 23 C -0.16 -2.05 9.86 -26.73 -0.26 -2.31 16 24 H 0.06 0.55 8.14 -51.93 -0.42 0.13 16 25 H 0.07 0.46 8.14 -51.93 -0.42 0.04 16 26 H 0.06 0.65 8.14 -51.93 -0.42 0.22 16 27 H 0.05 0.44 7.55 -51.93 -0.39 0.05 16 28 H 0.05 0.48 8.14 -51.93 -0.42 0.06 16 29 H 0.40 6.34 6.16 -40.82 -0.25 6.09 16 30 H 0.05 1.25 8.14 -51.92 -0.42 0.82 16 31 H 0.05 1.23 8.14 -51.93 -0.42 0.81 16 32 H 0.01 0.11 6.86 -51.93 -0.36 -0.25 16 33 H 0.09 2.13 6.07 -51.93 -0.31 1.81 16 34 H 0.03 0.60 8.14 -51.93 -0.42 0.18 16 35 H 0.03 0.61 8.14 -51.93 -0.42 0.19 16 36 H 0.08 2.11 6.07 -51.93 -0.32 1.80 16 37 H 0.01 0.12 6.86 -51.93 -0.36 -0.24 16 38 H 0.26 6.66 8.31 -40.82 -0.34 6.32 16 39 H 0.12 1.23 8.14 -51.93 -0.42 0.81 16 40 H 0.09 0.80 8.14 -51.93 -0.42 0.38 16 41 H 0.10 1.07 6.22 -51.93 -0.32 0.75 16 42 H 0.10 1.49 8.14 -51.93 -0.42 1.07 16 43 H 0.09 1.09 8.14 -51.93 -0.42 0.67 16 LS Contribution 342.48 15.07 5.16 5.16 Total: -1.00 -29.45 342.48 -8.13 -37.58 By element: Atomic # 1 Polarization: 12.42 SS G_CDS: -7.33 Total: 5.09 kcal Atomic # 6 Polarization: -9.31 SS G_CDS: -0.47 Total: -9.78 kcal Atomic # 7 Polarization: -36.31 SS G_CDS: 0.22 Total: -36.09 kcal Atomic # 8 Polarization: -16.99 SS G_CDS: -0.69 Total: -17.68 kcal Atomic # 14 Polarization: 20.75 SS G_CDS: -5.02 Total: 15.72 kcal Total LS contribution 5.16 Total: 5.16 kcal Total: -29.45 -8.13 -37.58 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000600001583.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -31.511 kcal (2) G-P(sol) polarization free energy of solvation -29.451 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -60.961 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.127 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.577 kcal (6) G-S(sol) free energy of system = (1) + (5) -69.088 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds