Wall clock time and date at job start Mon Mar 30 2020 01:24:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 O 1.42899 * 109.47165 * 2 1 4 4 C 1.42895 * 113.99811 * 185.12471 * 3 2 1 5 5 H 1.08997 * 109.47487 * 337.30342 * 4 3 2 6 6 C 1.50700 * 109.47161 * 217.30697 * 4 3 2 7 7 O 1.21284 * 119.99921 * 354.99651 * 6 4 3 8 8 N 1.34779 * 120.00171 * 175.00009 * 6 4 3 9 9 C 1.46502 * 119.99886 * 179.97438 * 8 6 4 10 10 C 1.52997 * 109.46988 * 180.02562 * 9 8 6 11 11 C 1.52999 * 109.47030 * 299.99992 * 10 9 8 12 12 C 1.53007 * 109.47178 * 59.99991 * 10 9 8 13 13 C 1.50700 * 109.47272 * 180.02562 * 10 9 8 14 14 H 1.08004 * 119.99329 * 359.97438 * 13 10 9 15 15 C 1.37872 * 120.00484 * 179.97438 * 13 10 9 16 16 N 1.31524 * 119.99807 * 359.97438 * 15 13 10 17 17 Si 1.86793 * 120.00330 * 180.02562 * 15 13 10 18 18 H 1.48499 * 109.47356 * 90.00161 * 17 15 13 19 19 H 1.48500 * 109.47250 * 210.00042 * 17 15 13 20 20 H 1.48500 * 109.47108 * 329.99643 * 17 15 13 21 21 C 1.53001 * 109.47399 * 97.30602 * 4 3 2 22 22 C 1.53004 * 117.51569 * 347.00030 * 21 4 3 23 23 C 1.52996 * 60.00001 * 107.48034 * 22 21 4 24 24 H 1.08997 * 109.46946 * 60.00654 * 1 2 3 25 25 H 1.09003 * 109.46894 * 180.02562 * 1 2 3 26 26 H 1.08995 * 109.47387 * 300.00686 * 1 2 3 27 27 H 1.08995 * 109.47387 * 239.99314 * 2 1 3 28 28 H 1.09005 * 109.46863 * 119.99708 * 2 1 3 29 29 H 0.97003 * 119.99812 * 0.02562 * 8 6 4 30 30 H 1.09008 * 109.46805 * 300.00096 * 9 8 6 31 31 H 1.08998 * 109.47123 * 59.99807 * 9 8 6 32 32 H 1.09003 * 109.47365 * 60.00172 * 11 10 9 33 33 H 1.09006 * 109.47252 * 180.02562 * 11 10 9 34 34 H 1.08992 * 109.47242 * 299.99789 * 11 10 9 35 35 H 1.08997 * 109.46766 * 59.99818 * 12 10 9 36 36 H 1.08996 * 109.46893 * 180.02562 * 12 10 9 37 37 H 1.08996 * 109.46531 * 300.00042 * 12 10 9 38 38 H 0.96993 * 120.00266 * 179.97438 * 16 15 13 39 39 H 1.09003 * 115.55126 * 201.29423 * 21 4 3 40 40 H 1.09002 * 117.49133 * 214.97007 * 22 21 4 41 41 H 1.08997 * 117.50016 * 359.97438 * 22 21 4 42 42 H 1.09000 * 117.49658 * 252.50667 * 23 22 21 43 43 H 1.08997 * 117.50320 * 107.49270 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0064 1.3473 0.0000 4 6 3.4259 1.4618 -0.1166 5 1 3.8937 0.5345 0.2142 6 6 3.9101 2.6024 0.7411 7 8 3.1107 3.3099 1.3169 8 7 5.2313 2.8363 0.8685 9 6 5.7018 3.9455 1.7019 10 6 7.2309 3.9905 1.6750 11 6 7.7895 2.6731 2.2165 12 6 7.7099 4.1947 0.2363 13 6 7.7150 5.1311 2.5328 14 1 7.0031 5.7611 3.0455 15 6 9.0665 5.3704 2.6632 16 7 9.9334 4.6028 2.0393 17 14 9.6665 6.7836 3.7270 18 1 9.8697 6.3047 5.1179 19 1 10.9511 7.2982 3.1881 20 1 8.6559 7.8717 3.7207 21 6 3.7980 1.7280 -1.5766 22 6 2.7105 1.5195 -2.6325 23 6 3.1542 2.9357 -2.2607 24 1 -0.3633 0.5137 -0.8900 25 1 -0.3633 -1.0277 0.0005 26 1 -0.3634 0.5139 0.8899 27 1 1.8934 -0.5139 -0.8899 28 1 1.8933 -0.5138 0.8901 29 1 5.8705 2.2707 0.4076 30 1 5.3041 4.8841 1.3158 31 1 5.3601 3.8003 2.7267 32 1 7.4394 1.8478 1.5964 33 1 8.8789 2.7053 2.1978 34 1 7.4482 2.5277 3.2414 35 1 7.3119 5.1332 -0.1494 36 1 8.7993 4.2263 0.2172 37 1 7.3598 3.3694 -0.3837 38 1 10.8842 4.7713 2.1306 39 1 4.8226 1.4797 -1.8535 40 1 3.0198 1.1340 -3.6040 41 1 1.7299 1.1921 -2.2872 42 1 2.4654 3.5403 -1.6708 43 1 3.7553 3.4820 -2.9876 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000600001583.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:24:07 Heat of formation + Delta-G solvation = -85.726247 kcal Electronic energy + Delta-G solvation = -21562.526219 eV Core-core repulsion = 18414.793691 eV Total energy + Delta-G solvation = -3147.732527 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 269.178 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -41.24110 -39.34964 -37.95996 -36.97134 -34.98400 -32.85078 -32.23350 -29.31811 -27.55116 -27.37928 -26.26806 -23.92285 -23.16459 -22.57089 -21.07710 -20.61571 -18.53936 -17.99340 -17.63821 -17.50915 -16.56307 -16.36180 -15.98691 -15.79552 -15.27588 -14.86852 -14.74206 -14.38772 -14.01164 -13.57426 -13.45273 -13.18792 -13.11216 -13.08273 -12.69032 -12.60371 -12.40464 -12.29788 -12.23620 -12.14408 -12.07771 -11.62197 -11.47924 -11.31429 -11.22771 -10.76158 -10.70608 -10.39407 -10.32259 -9.94831 -8.02306 -6.17798 1.42211 1.45219 1.53355 1.62622 1.98362 2.46421 2.74827 3.07339 3.21233 3.62681 3.81288 3.89200 4.18174 4.22196 4.25770 4.36461 4.43249 4.45773 4.51197 4.52038 4.72111 4.80521 4.84213 4.99275 5.00041 5.04636 5.06789 5.12165 5.19386 5.20440 5.26918 5.34615 5.36774 5.58489 5.67590 5.68352 6.14558 6.16439 6.22047 6.44077 6.68596 6.85910 7.31618 7.49782 8.96495 Molecular weight = 269.18amu Principal moments of inertia in cm(-1) A = 0.034368 B = 0.004063 C = 0.003917 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 814.504579 B = 6890.374157 C = 7146.999050 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C 0.044 3.956 3 O -0.381 6.381 4 C 0.109 3.891 5 H 0.117 0.883 6 C 0.505 3.495 7 O -0.583 6.583 8 N -0.702 5.702 9 C 0.149 3.851 10 C 0.052 3.948 11 C -0.121 4.121 12 C -0.119 4.119 13 C -0.530 4.530 14 H 0.042 0.958 15 C 0.030 3.970 16 N -0.897 5.897 17 Si 0.944 3.056 18 H -0.279 1.279 19 H -0.282 1.282 20 H -0.277 1.277 21 C -0.183 4.183 22 C -0.141 4.141 23 C -0.185 4.185 24 H 0.061 0.939 25 H 0.096 0.904 26 H 0.047 0.953 27 H 0.075 0.925 28 H 0.053 0.947 29 H 0.410 0.590 30 H 0.034 0.966 31 H 0.036 0.964 32 H 0.039 0.961 33 H 0.063 0.937 34 H 0.017 0.983 35 H 0.016 0.984 36 H 0.063 0.937 37 H 0.039 0.961 38 H 0.260 0.740 39 H 0.139 0.861 40 H 0.119 0.881 41 H 0.099 0.901 42 H 0.067 0.933 43 H 0.103 0.897 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.114 -12.616 -9.657 19.389 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.032 4.032 3 O -0.300 6.300 4 C 0.048 3.952 5 H 0.135 0.865 6 C 0.292 3.708 7 O -0.463 6.463 8 N -0.355 5.355 9 C 0.026 3.974 10 C 0.051 3.949 11 C -0.178 4.178 12 C -0.177 4.177 13 C -0.569 4.569 14 H 0.060 0.940 15 C -0.170 4.170 16 N -0.536 5.536 17 Si 0.771 3.229 18 H -0.205 1.205 19 H -0.207 1.207 20 H -0.203 1.203 21 C -0.202 4.202 22 C -0.178 4.178 23 C -0.222 4.222 24 H 0.080 0.920 25 H 0.115 0.885 26 H 0.066 0.934 27 H 0.093 0.907 28 H 0.071 0.929 29 H 0.247 0.753 30 H 0.053 0.947 31 H 0.054 0.946 32 H 0.058 0.942 33 H 0.082 0.918 34 H 0.036 0.964 35 H 0.035 0.965 36 H 0.082 0.918 37 H 0.058 0.942 38 H 0.070 0.930 39 H 0.157 0.843 40 H 0.137 0.863 41 H 0.117 0.883 42 H 0.086 0.914 43 H 0.121 0.879 Dipole moment (debyes) X Y Z Total from point charges -11.608 -11.975 -9.250 19.071 hybrid contribution 0.897 0.849 0.789 1.465 sum -10.712 -11.126 -8.460 17.610 Atomic orbital electron populations 1.21756 0.92846 1.03496 1.02434 1.22892 0.96470 0.82380 1.01465 1.88017 1.19103 1.28563 1.94288 1.21346 0.83706 0.96858 0.93338 0.86526 1.21125 0.82381 0.86125 0.81197 1.90655 1.55639 1.50691 1.49318 1.45995 1.06405 1.33307 1.49785 1.21264 0.96335 0.87451 0.92393 1.18356 0.87902 0.94445 0.94168 1.21672 1.02919 0.95718 0.97523 1.21650 1.02767 0.97516 0.95722 1.21273 0.92014 1.14231 1.29375 0.93993 1.25420 0.96871 0.98141 0.96562 1.69898 1.01740 1.38930 1.43039 0.85781 0.77607 0.80269 0.79281 1.20486 1.20708 1.20258 1.22795 1.00416 1.05686 0.91262 1.22999 0.98518 0.97698 0.98583 1.22832 1.03924 0.91845 1.03596 0.91981 0.88502 0.93370 0.90703 0.92877 0.75267 0.94720 0.94557 0.94186 0.91789 0.96408 0.96503 0.91842 0.94176 0.92993 0.84327 0.86284 0.88264 0.91445 0.87872 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.35 10.28 71.98 0.74 -1.61 16 2 C 0.04 0.80 5.63 71.98 0.40 1.20 16 3 O -0.38 -10.41 8.24 -129.99 -1.07 -11.48 16 4 C 0.11 2.78 2.97 29.85 0.09 2.86 16 5 H 0.12 2.26 7.74 -2.39 -0.02 2.24 16 6 C 0.51 18.01 6.94 87.66 0.61 18.62 16 7 O -0.58 -26.72 16.51 15.95 0.26 -26.45 16 8 N -0.70 -24.45 4.92 -463.05 -2.28 -26.72 16 9 C 0.15 6.49 4.50 86.38 0.39 6.88 16 10 C 0.05 2.40 0.50 -52.93 -0.03 2.37 16 11 C -0.12 -5.28 8.08 71.98 0.58 -4.70 16 12 C -0.12 -5.21 8.08 71.98 0.58 -4.63 16 13 C -0.53 -28.26 8.01 25.60 0.21 -28.06 16 14 H 0.04 2.30 7.74 -2.91 -0.02 2.28 16 15 C 0.03 1.58 5.15 84.65 0.44 2.01 16 16 N -0.90 -47.51 9.35 21.45 0.20 -47.31 16 17 Si 0.94 42.75 29.54 68.60 2.03 44.78 16 18 H -0.28 -12.47 7.11 99.48 0.71 -11.77 16 19 H -0.28 -12.44 7.11 99.48 0.71 -11.73 16 20 H -0.28 -12.62 7.11 99.48 0.71 -11.92 16 21 C -0.18 -3.84 5.76 -10.79 -0.06 -3.90 16 22 C -0.14 -2.51 9.56 30.59 0.29 -2.21 16 23 C -0.18 -4.43 9.86 30.59 0.30 -4.13 16 24 H 0.06 0.98 8.14 -2.39 -0.02 0.96 16 25 H 0.10 1.00 8.14 -2.39 -0.02 0.98 16 26 H 0.05 0.92 8.14 -2.39 -0.02 0.90 16 27 H 0.07 1.01 7.55 -2.39 -0.02 0.99 16 28 H 0.05 0.92 8.14 -2.38 -0.02 0.90 16 29 H 0.41 11.98 6.16 -92.71 -0.57 11.41 16 30 H 0.03 1.63 8.14 -2.38 -0.02 1.61 16 31 H 0.04 1.69 8.14 -2.39 -0.02 1.67 16 32 H 0.04 1.43 6.86 -2.39 -0.02 1.42 16 33 H 0.06 3.11 6.07 -2.38 -0.01 3.10 16 34 H 0.02 0.76 8.14 -2.39 -0.02 0.74 16 35 H 0.02 0.73 8.14 -2.39 -0.02 0.71 16 36 H 0.06 3.09 6.07 -2.39 -0.01 3.08 16 37 H 0.04 1.44 6.86 -2.39 -0.02 1.43 16 38 H 0.26 13.28 8.31 -92.71 -0.77 12.51 16 39 H 0.14 2.32 8.14 -2.39 -0.02 2.30 16 40 H 0.12 1.52 8.14 -2.39 -0.02 1.50 16 41 H 0.10 1.82 6.22 -2.39 -0.01 1.81 16 42 H 0.07 2.06 8.14 -2.39 -0.02 2.04 16 43 H 0.10 2.24 8.14 -2.39 -0.02 2.22 16 Total: -1.00 -65.20 342.48 4.09 -61.11 By element: Atomic # 1 Polarization: 20.95 SS G_CDS: 0.41 Total: 21.36 kcal Atomic # 6 Polarization: -19.82 SS G_CDS: 4.54 Total: -15.28 kcal Atomic # 7 Polarization: -71.96 SS G_CDS: -2.08 Total: -74.04 kcal Atomic # 8 Polarization: -37.12 SS G_CDS: -0.81 Total: -37.93 kcal Atomic # 14 Polarization: 42.75 SS G_CDS: 2.03 Total: 44.78 kcal Total: -65.20 4.09 -61.11 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000600001583.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -24.617 kcal (2) G-P(sol) polarization free energy of solvation -65.200 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -89.817 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.091 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.109 kcal (6) G-S(sol) free energy of system = (1) + (5) -85.726 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds