Wall clock time and date at job start Mon Mar 30 2020 01:38:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 O 1.45189 * 109.47103 * 2 1 4 4 C 1.34234 * 117.00115 * 179.97438 * 3 2 1 5 5 O 1.20832 * 119.99522 * 0.02562 * 4 3 2 6 6 C 1.50701 * 120.00394 * 179.97438 * 4 3 2 7 7 N 1.46897 * 109.47222 * 179.83113 * 6 4 3 8 8 C 1.46891 * 111.00215 * 162.77919 * 7 6 4 9 9 C 1.52995 * 109.47484 * 196.72896 * 8 7 6 10 10 H 1.09002 * 109.47195 * 306.04842 * 9 8 7 11 11 C 1.53001 * 109.47618 * 186.04967 * 9 8 7 12 12 C 1.53002 * 109.47283 * 66.04587 * 9 8 7 13 13 C 1.50699 * 109.47194 * 185.00209 * 12 9 8 14 14 H 1.08001 * 120.00358 * 359.97438 * 13 12 9 15 15 C 1.37879 * 120.00039 * 179.72409 * 13 12 9 16 16 N 1.31519 * 119.99987 * 0.28015 * 15 13 12 17 17 Si 1.86802 * 120.00239 * 180.27519 * 15 13 12 18 18 H 1.48494 * 109.46882 * 90.00003 * 17 15 13 19 19 H 1.48500 * 109.47246 * 210.00108 * 17 15 13 20 20 H 1.48498 * 109.46918 * 330.00405 * 17 15 13 21 21 C 1.46905 * 110.99766 * 286.73400 * 7 6 4 22 22 C 1.52993 * 117.49754 * 3.53174 * 21 7 6 23 23 C 1.53000 * 60.00158 * 252.51085 * 22 21 7 24 24 H 1.09000 * 109.47114 * 299.99674 * 1 2 3 25 25 H 1.09003 * 109.47422 * 59.99894 * 1 2 3 26 26 H 1.09004 * 109.47396 * 179.97438 * 1 2 3 27 27 H 1.09000 * 109.46852 * 239.99588 * 2 1 3 28 28 H 1.08998 * 109.46798 * 120.00433 * 2 1 3 29 29 H 1.08997 * 109.46875 * 59.82701 * 6 4 3 30 30 H 1.09008 * 109.47000 * 299.82969 * 6 4 3 31 31 H 1.09004 * 109.47374 * 76.72555 * 8 7 6 32 32 H 1.09008 * 109.47130 * 316.72908 * 8 7 6 33 33 H 1.08993 * 109.47488 * 184.53779 * 11 9 8 34 34 H 1.09001 * 109.46691 * 304.53520 * 11 9 8 35 35 H 1.09000 * 109.46877 * 64.53139 * 11 9 8 36 36 H 1.08996 * 109.46899 * 65.00447 * 12 9 8 37 37 H 1.09003 * 109.47118 * 305.00418 * 12 9 8 38 38 H 0.96993 * 120.00268 * 180.02562 * 16 15 13 39 39 H 1.08998 * 115.55065 * 149.24525 * 21 7 6 40 40 H 1.09001 * 117.50442 * 0.02562 * 22 21 7 41 41 H 1.09007 * 117.49788 * 145.02739 * 22 21 7 42 42 H 1.09001 * 117.50215 * 252.51268 * 23 22 21 43 43 H 1.09001 * 117.49469 * 107.48780 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0140 1.3689 0.0000 4 6 3.3447 1.5448 0.0005 5 8 4.0807 0.5865 0.0005 6 6 3.9208 2.9373 0.0000 7 7 5.3877 2.8604 0.0048 8 6 5.9834 4.1402 -0.4015 9 6 7.4476 3.9217 -0.7874 10 1 7.9685 3.4235 0.0304 11 6 8.1091 5.2730 -1.0651 12 6 7.5196 3.0509 -2.0434 13 6 8.9599 2.7337 -2.3529 14 1 9.7455 3.1153 -1.7177 15 6 9.2745 1.9519 -3.4442 16 7 8.3179 1.4876 -4.2182 17 14 11.0594 1.5523 -3.8235 18 1 11.4448 0.2987 -3.1271 19 1 11.2268 1.3762 -5.2885 20 1 11.9256 2.6644 -3.3564 21 6 5.8885 2.4407 1.3206 22 6 4.8536 2.0864 2.3902 23 6 5.6533 3.3861 2.5003 24 1 -0.3633 0.5138 0.8900 25 1 -0.3634 0.5139 -0.8900 26 1 -0.3634 -1.0277 -0.0005 27 1 1.8933 -0.5139 -0.8900 28 1 1.8933 -0.5139 0.8899 29 1 3.5820 3.4710 0.8879 30 1 3.5877 3.4680 -0.8921 31 1 5.9275 4.8463 0.4271 32 1 5.4380 4.5396 -1.2566 33 1 9.1280 5.1132 -1.4176 34 1 7.5405 5.8060 -1.8271 35 1 8.1299 5.8625 -0.1486 36 1 7.0771 3.5870 -2.8829 37 1 6.9715 2.1239 -1.8747 38 1 8.5392 0.9373 -4.9857 39 1 6.8174 1.8706 1.3101 40 1 3.8011 2.1642 2.1176 41 1 5.1014 1.2827 3.0837 42 1 6.4273 3.4375 3.2662 43 1 5.1269 4.3194 2.3002 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000602447477.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:38:02 Heat of formation + Delta-G solvation = -58.671538 kcal Electronic energy + Delta-G solvation = -21498.226265 eV Core-core repulsion = 18351.666918 eV Total energy + Delta-G solvation = -3146.559347 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 269.178 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -40.55198 -38.78964 -36.25724 -35.32679 -33.00732 -32.00169 -31.61321 -28.21484 -26.84579 -24.75072 -23.34164 -22.96932 -22.11768 -21.40729 -19.84127 -18.54248 -17.47217 -17.20159 -16.24195 -16.07724 -15.98663 -15.09661 -14.42067 -14.26167 -13.97582 -13.59112 -13.19374 -12.93114 -12.72005 -12.62250 -12.34400 -11.94341 -11.72630 -11.67285 -11.44945 -11.43487 -11.25509 -10.84780 -10.79220 -10.61205 -10.47831 -10.33876 -10.22107 -10.15601 -9.86097 -9.59951 -9.01603 -8.80795 -8.18595 -7.91127 -5.82709 -3.83003 2.48124 2.65470 3.40861 3.46906 3.49325 3.90737 4.10899 4.58713 4.78317 4.82209 4.85147 4.93910 4.99897 5.01249 5.18813 5.19629 5.33180 5.52753 5.59111 5.61907 5.64992 5.67217 5.81741 5.83134 5.89493 6.08316 6.10879 6.24850 6.30132 6.43114 6.53732 6.57527 7.00909 7.02311 7.25778 7.32579 7.45068 7.90495 8.06037 8.12754 8.27814 8.62761 9.25015 9.78844 11.28559 Molecular weight = 269.18amu Principal moments of inertia in cm(-1) A = 0.018090 B = 0.004922 C = 0.004251 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1547.456224 B = 5687.908323 C = 6585.408619 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C 0.062 3.938 3 O -0.369 6.369 4 C 0.456 3.544 5 O -0.471 6.471 6 C 0.059 3.941 7 N -0.481 5.481 8 C 0.067 3.933 9 C -0.080 4.080 10 H 0.058 0.942 11 C -0.134 4.134 12 C 0.033 3.967 13 C -0.512 4.512 14 H 0.052 0.948 15 C 0.056 3.944 16 N -0.894 5.894 17 Si 0.884 3.116 18 H -0.282 1.282 19 H -0.288 1.288 20 H -0.276 1.276 21 C 0.050 3.950 22 C -0.191 4.191 23 C -0.218 4.218 24 H 0.064 0.936 25 H 0.066 0.934 26 H 0.077 0.923 27 H 0.070 0.930 28 H 0.067 0.933 29 H 0.073 0.927 30 H 0.114 0.886 31 H 0.030 0.970 32 H 0.071 0.929 33 H 0.066 0.934 34 H 0.043 0.957 35 H 0.028 0.972 36 H 0.008 0.992 37 H 0.034 0.966 38 H 0.257 0.743 39 H 0.131 0.869 40 H 0.087 0.913 41 H 0.097 0.903 42 H 0.097 0.903 43 H 0.090 0.910 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.105 2.873 11.959 18.714 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.012 4.012 3 O -0.287 6.287 4 C 0.296 3.704 5 O -0.354 6.354 6 C -0.071 4.071 7 N -0.204 5.204 8 C -0.059 4.059 9 C -0.098 4.098 10 H 0.077 0.923 11 C -0.191 4.191 12 C -0.004 4.004 13 C -0.551 4.551 14 H 0.070 0.930 15 C -0.144 4.144 16 N -0.534 5.534 17 Si 0.713 3.287 18 H -0.209 1.209 19 H -0.214 1.214 20 H -0.201 1.201 21 C -0.059 4.059 22 C -0.229 4.229 23 C -0.257 4.257 24 H 0.083 0.917 25 H 0.085 0.915 26 H 0.096 0.904 27 H 0.089 0.911 28 H 0.085 0.915 29 H 0.091 0.909 30 H 0.132 0.868 31 H 0.048 0.952 32 H 0.089 0.911 33 H 0.085 0.915 34 H 0.062 0.938 35 H 0.047 0.953 36 H 0.026 0.974 37 H 0.053 0.947 38 H 0.067 0.933 39 H 0.148 0.852 40 H 0.106 0.894 41 H 0.115 0.885 42 H 0.115 0.885 43 H 0.108 0.892 Dipole moment (debyes) X Y Z Total from point charges -13.783 2.081 11.423 18.022 hybrid contribution 0.712 0.058 0.273 0.765 sum -13.071 2.139 11.696 17.670 Atomic orbital electron populations 1.21795 0.92922 1.02761 1.03318 1.22946 0.94983 0.80569 1.02654 1.86463 1.25114 1.32175 1.84983 1.23569 0.80227 0.93051 0.73518 1.90718 1.59905 1.42338 1.42437 1.21637 0.90613 0.90682 1.04135 1.61561 1.01992 1.31729 1.25092 1.22389 0.98134 0.86872 0.98465 1.21160 0.90859 0.96576 1.01255 0.92339 1.21721 1.02140 0.96389 0.98895 1.19072 0.96377 0.95005 0.89941 1.21301 0.92952 1.30557 1.10247 0.92984 1.24987 0.96577 0.96268 0.96580 1.69979 1.31477 1.35438 1.16537 0.86721 0.86069 0.78661 0.77269 1.20864 1.21448 1.20068 1.22811 0.99903 1.00696 0.82501 1.23284 0.97142 0.99227 1.03230 1.23427 1.04146 0.94273 1.03835 0.91714 0.91498 0.90429 0.91134 0.91492 0.90935 0.86828 0.95229 0.91097 0.91487 0.93816 0.95267 0.97382 0.94740 0.93320 0.85165 0.89438 0.88475 0.88457 0.89164 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.20 10.29 37.16 0.38 -0.82 16 2 C 0.06 0.71 6.19 37.16 0.23 0.94 16 3 O -0.37 -4.99 10.22 -39.27 -0.40 -5.39 16 4 C 0.46 7.19 5.96 36.01 0.21 7.40 16 5 O -0.47 -9.13 15.02 -18.75 -0.28 -9.41 16 6 C 0.06 0.83 5.11 -4.98 -0.03 0.80 16 7 N -0.48 -8.23 3.71 -228.09 -0.85 -9.07 16 8 C 0.07 1.13 4.30 -3.83 -0.02 1.11 16 9 C -0.08 -1.62 2.37 -90.62 -0.21 -1.83 16 10 H 0.06 1.23 7.37 -51.93 -0.38 0.85 16 11 C -0.13 -2.48 9.07 37.16 0.34 -2.14 16 12 C 0.03 0.87 4.40 -27.88 -0.12 0.74 16 13 C -0.51 -14.67 8.34 -34.44 -0.29 -14.96 16 14 H 0.05 1.45 7.07 -52.49 -0.37 1.08 16 15 C 0.06 1.66 5.46 -17.82 -0.10 1.56 16 16 N -0.89 -27.85 13.29 55.43 0.74 -27.11 16 17 Si 0.88 22.30 29.54 -169.99 -5.02 17.28 16 18 H -0.28 -7.08 7.11 56.52 0.40 -6.67 16 19 H -0.29 -7.22 7.11 56.52 0.40 -6.81 16 20 H -0.28 -6.76 7.11 56.52 0.40 -6.36 16 21 C 0.05 0.79 4.82 -67.71 -0.33 0.46 16 22 C -0.19 -2.53 8.49 -26.73 -0.23 -2.76 16 23 C -0.22 -2.71 9.17 -26.73 -0.25 -2.95 16 24 H 0.06 0.48 8.14 -51.93 -0.42 0.05 16 25 H 0.07 0.53 8.14 -51.93 -0.42 0.10 16 26 H 0.08 0.48 8.14 -51.93 -0.42 0.06 16 27 H 0.07 0.85 8.13 -51.93 -0.42 0.43 16 28 H 0.07 0.74 8.13 -51.93 -0.42 0.32 16 29 H 0.07 0.85 6.02 -51.93 -0.31 0.54 16 30 H 0.11 1.45 7.69 -51.92 -0.40 1.06 16 31 H 0.03 0.43 6.69 -51.93 -0.35 0.08 16 32 H 0.07 1.16 7.69 -51.92 -0.40 0.76 16 33 H 0.07 1.36 6.83 -51.93 -0.35 1.01 16 34 H 0.04 0.78 8.14 -51.93 -0.42 0.35 16 35 H 0.03 0.45 8.14 -51.93 -0.42 0.03 16 36 H 0.01 0.22 8.14 -51.93 -0.42 -0.20 16 37 H 0.03 1.00 7.66 -51.93 -0.40 0.60 16 38 H 0.26 7.59 8.31 -40.82 -0.34 7.26 16 39 H 0.13 2.28 8.01 -51.93 -0.42 1.87 16 40 H 0.09 1.13 4.91 -51.93 -0.25 0.88 16 41 H 0.10 1.22 8.14 -51.93 -0.42 0.79 16 42 H 0.10 1.11 8.14 -51.93 -0.42 0.69 16 43 H 0.09 1.05 7.17 -51.93 -0.37 0.68 16 LS Contribution 343.89 15.07 5.18 5.18 Total: -1.00 -33.13 343.89 -8.40 -41.53 By element: Atomic # 1 Polarization: 6.79 SS G_CDS: -7.37 Total: -0.58 kcal Atomic # 6 Polarization: -12.04 SS G_CDS: -0.40 Total: -12.43 kcal Atomic # 7 Polarization: -36.08 SS G_CDS: -0.11 Total: -36.19 kcal Atomic # 8 Polarization: -14.12 SS G_CDS: -0.68 Total: -14.80 kcal Atomic # 14 Polarization: 22.30 SS G_CDS: -5.02 Total: 17.28 kcal Total LS contribution 5.18 Total: 5.18 kcal Total: -33.13 -8.40 -41.53 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000602447477.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -17.140 kcal (2) G-P(sol) polarization free energy of solvation -33.132 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -50.272 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.400 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.531 kcal (6) G-S(sol) free energy of system = (1) + (5) -58.672 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds