Wall clock time and date at job start Mon Mar 30 2020 01:38:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 O 1.45189 * 109.47103 * 2 1 4 4 C 1.34234 * 117.00115 * 179.97438 * 3 2 1 5 5 O 1.20832 * 119.99522 * 0.02562 * 4 3 2 6 6 C 1.50701 * 120.00394 * 179.97438 * 4 3 2 7 7 N 1.46897 * 109.47222 * 179.83113 * 6 4 3 8 8 C 1.46891 * 111.00215 * 162.77919 * 7 6 4 9 9 C 1.52995 * 109.47484 * 196.72896 * 8 7 6 10 10 H 1.09002 * 109.47195 * 306.04842 * 9 8 7 11 11 C 1.53001 * 109.47618 * 186.04967 * 9 8 7 12 12 C 1.53002 * 109.47283 * 66.04587 * 9 8 7 13 13 C 1.50699 * 109.47194 * 185.00209 * 12 9 8 14 14 H 1.08001 * 120.00358 * 359.97438 * 13 12 9 15 15 C 1.37879 * 120.00039 * 179.72409 * 13 12 9 16 16 N 1.31519 * 119.99987 * 0.28015 * 15 13 12 17 17 Si 1.86802 * 120.00239 * 180.27519 * 15 13 12 18 18 H 1.48494 * 109.46882 * 90.00003 * 17 15 13 19 19 H 1.48500 * 109.47246 * 210.00108 * 17 15 13 20 20 H 1.48498 * 109.46918 * 330.00405 * 17 15 13 21 21 C 1.46905 * 110.99766 * 286.73400 * 7 6 4 22 22 C 1.52993 * 117.49754 * 3.53174 * 21 7 6 23 23 C 1.53000 * 60.00158 * 252.51085 * 22 21 7 24 24 H 1.09000 * 109.47114 * 299.99674 * 1 2 3 25 25 H 1.09003 * 109.47422 * 59.99894 * 1 2 3 26 26 H 1.09004 * 109.47396 * 179.97438 * 1 2 3 27 27 H 1.09000 * 109.46852 * 239.99588 * 2 1 3 28 28 H 1.08998 * 109.46798 * 120.00433 * 2 1 3 29 29 H 1.08997 * 109.46875 * 59.82701 * 6 4 3 30 30 H 1.09008 * 109.47000 * 299.82969 * 6 4 3 31 31 H 1.09004 * 109.47374 * 76.72555 * 8 7 6 32 32 H 1.09008 * 109.47130 * 316.72908 * 8 7 6 33 33 H 1.08993 * 109.47488 * 184.53779 * 11 9 8 34 34 H 1.09001 * 109.46691 * 304.53520 * 11 9 8 35 35 H 1.09000 * 109.46877 * 64.53139 * 11 9 8 36 36 H 1.08996 * 109.46899 * 65.00447 * 12 9 8 37 37 H 1.09003 * 109.47118 * 305.00418 * 12 9 8 38 38 H 0.96993 * 120.00268 * 180.02562 * 16 15 13 39 39 H 1.08998 * 115.55065 * 149.24525 * 21 7 6 40 40 H 1.09001 * 117.50442 * 0.02562 * 22 21 7 41 41 H 1.09007 * 117.49788 * 145.02739 * 22 21 7 42 42 H 1.09001 * 117.50215 * 252.51268 * 23 22 21 43 43 H 1.09001 * 117.49469 * 107.48780 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0140 1.3689 0.0000 4 6 3.3447 1.5448 0.0005 5 8 4.0807 0.5865 0.0005 6 6 3.9208 2.9373 0.0000 7 7 5.3877 2.8604 0.0048 8 6 5.9834 4.1402 -0.4015 9 6 7.4476 3.9217 -0.7874 10 1 7.9685 3.4235 0.0304 11 6 8.1091 5.2730 -1.0651 12 6 7.5196 3.0509 -2.0434 13 6 8.9599 2.7337 -2.3529 14 1 9.7455 3.1153 -1.7177 15 6 9.2745 1.9519 -3.4442 16 7 8.3179 1.4876 -4.2182 17 14 11.0594 1.5523 -3.8235 18 1 11.4448 0.2987 -3.1271 19 1 11.2268 1.3762 -5.2885 20 1 11.9256 2.6644 -3.3564 21 6 5.8885 2.4407 1.3206 22 6 4.8536 2.0864 2.3902 23 6 5.6533 3.3861 2.5003 24 1 -0.3633 0.5138 0.8900 25 1 -0.3634 0.5139 -0.8900 26 1 -0.3634 -1.0277 -0.0005 27 1 1.8933 -0.5139 -0.8900 28 1 1.8933 -0.5139 0.8899 29 1 3.5820 3.4710 0.8879 30 1 3.5877 3.4680 -0.8921 31 1 5.9275 4.8463 0.4271 32 1 5.4380 4.5396 -1.2566 33 1 9.1280 5.1132 -1.4176 34 1 7.5405 5.8060 -1.8271 35 1 8.1299 5.8625 -0.1486 36 1 7.0771 3.5870 -2.8829 37 1 6.9715 2.1239 -1.8747 38 1 8.5392 0.9373 -4.9857 39 1 6.8174 1.8706 1.3101 40 1 3.8011 2.1642 2.1176 41 1 5.1014 1.2827 3.0837 42 1 6.4273 3.4375 3.2662 43 1 5.1269 4.3194 2.3002 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000602447477.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:38:01 Heat of formation + Delta-G solvation = -78.654832 kcal Electronic energy + Delta-G solvation = -21499.092806 eV Core-core repulsion = 18351.666918 eV Total energy + Delta-G solvation = -3147.425888 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 269.178 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -41.74822 -39.96799 -37.50318 -36.90437 -34.66573 -33.63045 -32.60557 -29.59967 -28.73284 -26.12420 -24.86086 -24.22915 -23.20445 -22.62392 -21.18228 -20.00682 -18.70851 -18.41264 -18.32487 -17.20002 -17.13749 -16.55973 -16.25998 -15.44508 -15.09962 -15.04809 -14.55055 -14.22036 -14.00701 -13.89344 -13.57396 -13.44550 -13.15178 -12.82280 -12.77587 -12.72531 -12.63860 -12.48220 -12.30923 -12.20068 -12.04188 -11.70313 -11.50571 -11.44648 -11.41498 -11.10890 -10.87551 -10.79273 -10.45774 -9.11404 -8.10325 -6.18584 1.25964 1.38982 1.40867 1.51038 1.58274 2.45027 2.82356 2.96815 3.22771 3.70983 3.77918 3.92943 3.99333 3.99906 4.10684 4.13008 4.22839 4.33048 4.36071 4.44463 4.59757 4.65285 4.81548 4.83912 4.87350 4.92927 4.94266 5.00333 5.11959 5.14791 5.19956 5.34268 5.47987 5.49980 5.55350 5.69855 5.92838 6.04975 6.08182 6.20070 6.40063 6.87269 7.01078 7.48466 9.01433 Molecular weight = 269.18amu Principal moments of inertia in cm(-1) A = 0.018090 B = 0.004922 C = 0.004251 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1547.456224 B = 5687.908323 C = 6585.408619 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C 0.053 3.947 3 O -0.363 6.363 4 C 0.458 3.542 5 O -0.518 6.518 6 C 0.060 3.940 7 N -0.516 5.516 8 C 0.077 3.923 9 C -0.073 4.073 10 H 0.048 0.952 11 C -0.127 4.127 12 C 0.045 3.955 13 C -0.526 4.526 14 H 0.057 0.943 15 C -0.004 4.004 16 N -0.936 5.936 17 Si 0.956 3.044 18 H -0.278 1.278 19 H -0.284 1.284 20 H -0.260 1.260 21 C 0.017 3.983 22 C -0.184 4.184 23 C -0.186 4.186 24 H 0.074 0.926 25 H 0.068 0.932 26 H 0.098 0.902 27 H 0.056 0.944 28 H 0.067 0.933 29 H 0.107 0.893 30 H 0.127 0.873 31 H 0.064 0.936 32 H 0.073 0.927 33 H 0.042 0.958 34 H 0.048 0.952 35 H 0.067 0.933 36 H -0.019 1.019 37 H -0.007 1.007 38 H 0.258 0.742 39 H 0.097 0.903 40 H 0.092 0.908 41 H 0.099 0.901 42 H 0.110 0.890 43 H 0.109 0.891 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.656 4.516 13.597 20.496 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.020 4.020 3 O -0.281 6.281 4 C 0.300 3.700 5 O -0.405 6.405 6 C -0.069 4.069 7 N -0.239 5.239 8 C -0.049 4.049 9 C -0.092 4.092 10 H 0.067 0.933 11 C -0.185 4.185 12 C 0.008 3.992 13 C -0.565 4.565 14 H 0.076 0.924 15 C -0.201 4.201 16 N -0.578 5.578 17 Si 0.781 3.219 18 H -0.204 1.204 19 H -0.210 1.210 20 H -0.185 1.185 21 C -0.091 4.091 22 C -0.221 4.221 23 C -0.225 4.225 24 H 0.093 0.907 25 H 0.087 0.913 26 H 0.116 0.884 27 H 0.074 0.926 28 H 0.085 0.915 29 H 0.124 0.876 30 H 0.145 0.855 31 H 0.082 0.918 32 H 0.091 0.909 33 H 0.061 0.939 34 H 0.067 0.933 35 H 0.086 0.914 36 H -0.001 1.001 37 H 0.012 0.988 38 H 0.067 0.933 39 H 0.114 0.886 40 H 0.110 0.890 41 H 0.117 0.883 42 H 0.128 0.872 43 H 0.127 0.873 Dipole moment (debyes) X Y Z Total from point charges -14.352 3.747 13.079 19.776 hybrid contribution 0.827 -0.521 -0.232 1.005 sum -13.525 3.227 12.847 18.931 Atomic orbital electron populations 1.21804 0.89892 1.04333 1.03873 1.23229 0.97308 0.79484 1.02024 1.86471 1.23833 1.33456 1.84317 1.23994 0.80575 0.93292 0.72098 1.90704 1.61039 1.43879 1.44829 1.21738 0.88909 0.89985 1.06231 1.61293 1.03866 1.32188 1.26568 1.22202 0.95285 0.87626 0.99765 1.20992 0.94156 0.96367 0.97692 0.93348 1.21630 1.00378 0.95625 1.00850 1.18858 0.94408 0.94021 0.91922 1.21760 0.94321 1.30194 1.10179 0.92432 1.25928 1.01388 0.96216 0.96543 1.70134 1.34015 1.36410 1.17207 0.85590 0.80410 0.78763 0.77143 1.20436 1.20960 1.18457 1.22581 0.99891 1.03405 0.83265 1.23292 0.96872 1.00167 1.01768 1.23481 1.03539 0.94189 1.01293 0.90690 0.91335 0.88358 0.92596 0.91469 0.87591 0.85546 0.91797 0.90904 0.93883 0.93326 0.91442 1.00100 0.98835 0.93316 0.88552 0.88959 0.88275 0.87176 0.87286 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.01 10.29 71.98 0.74 -1.27 16 2 C 0.05 1.19 6.19 71.98 0.45 1.64 16 3 O -0.36 -9.57 10.22 -51.45 -0.53 -10.09 16 4 C 0.46 14.45 5.96 71.24 0.42 14.87 16 5 O -0.52 -20.88 15.02 21.95 0.33 -20.55 16 6 C 0.06 1.62 5.11 85.56 0.44 2.06 16 7 N -0.52 -17.57 3.71 -875.54 -3.25 -20.81 16 8 C 0.08 2.48 4.30 86.30 0.37 2.85 16 9 C -0.07 -2.97 2.37 -10.79 -0.03 -3.00 16 10 H 0.05 2.05 7.37 -2.39 -0.02 2.03 16 11 C -0.13 -4.52 9.07 71.98 0.65 -3.87 16 12 C 0.05 2.46 4.40 29.85 0.13 2.59 16 13 C -0.53 -30.96 8.34 25.60 0.21 -30.75 16 14 H 0.06 3.24 7.07 -2.91 -0.02 3.22 16 15 C 0.00 -0.25 5.46 84.65 0.46 0.21 16 16 N -0.94 -60.29 13.29 21.45 0.28 -60.01 16 17 Si 0.96 46.48 29.54 68.60 2.03 48.50 16 18 H -0.28 -13.29 7.11 99.48 0.71 -12.58 16 19 H -0.28 -13.51 7.11 99.48 0.71 -12.80 16 20 H -0.26 -11.93 7.11 99.48 0.71 -11.22 16 21 C 0.02 0.55 4.82 44.91 0.22 0.76 16 22 C -0.18 -4.60 8.49 30.59 0.26 -4.34 16 23 C -0.19 -4.09 9.17 30.59 0.28 -3.81 16 24 H 0.07 0.93 8.14 -2.39 -0.02 0.91 16 25 H 0.07 0.96 8.14 -2.39 -0.02 0.94 16 26 H 0.10 1.00 8.14 -2.38 -0.02 0.98 16 27 H 0.06 1.40 8.13 -2.39 -0.02 1.38 16 28 H 0.07 1.49 8.13 -2.39 -0.02 1.47 16 29 H 0.11 2.15 6.02 -2.39 -0.01 2.13 16 30 H 0.13 3.05 7.69 -2.38 -0.02 3.04 16 31 H 0.06 1.62 6.69 -2.39 -0.02 1.60 16 32 H 0.07 2.29 7.69 -2.38 -0.02 2.27 16 33 H 0.04 1.71 6.83 -2.39 -0.02 1.70 16 34 H 0.05 1.66 8.14 -2.39 -0.02 1.64 16 35 H 0.07 1.89 8.14 -2.39 -0.02 1.87 16 36 H -0.02 -1.15 8.14 -2.39 -0.02 -1.17 16 37 H -0.01 -0.42 7.66 -2.39 -0.02 -0.44 16 38 H 0.26 15.71 8.31 -92.71 -0.77 14.94 16 39 H 0.10 3.58 8.01 -2.39 -0.02 3.56 16 40 H 0.09 2.21 4.91 -2.39 -0.01 2.19 16 41 H 0.10 2.40 8.14 -2.38 -0.02 2.38 16 42 H 0.11 2.16 8.14 -2.39 -0.02 2.14 16 43 H 0.11 2.02 7.17 -2.39 -0.02 2.00 16 Total: -1.00 -75.28 343.89 4.45 -70.84 By element: Atomic # 1 Polarization: 13.21 SS G_CDS: 0.97 Total: 14.18 kcal Atomic # 6 Polarization: -26.66 SS G_CDS: 4.61 Total: -22.05 kcal Atomic # 7 Polarization: -77.86 SS G_CDS: -2.96 Total: -80.82 kcal Atomic # 8 Polarization: -30.45 SS G_CDS: -0.20 Total: -30.64 kcal Atomic # 14 Polarization: 46.48 SS G_CDS: 2.03 Total: 48.50 kcal Total: -75.28 4.45 -70.84 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000602447477.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -7.819 kcal (2) G-P(sol) polarization free energy of solvation -75.282 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -83.102 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.447 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.836 kcal (6) G-S(sol) free energy of system = (1) + (5) -78.655 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds