Wall clock time and date at job start Mon Mar 30 2020 01:38:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 O 1.45195 * 109.47334 * 2 1 4 4 C 1.34228 * 117.00224 * 179.97438 * 3 2 1 5 5 O 1.20831 * 120.00146 * 359.97438 * 4 3 2 6 6 C 1.50701 * 120.00206 * 179.97438 * 4 3 2 7 7 N 1.46908 * 109.47236 * 185.16758 * 6 4 3 8 8 C 1.46896 * 111.00122 * 196.20218 * 7 6 4 9 9 C 1.53001 * 109.47323 * 75.80650 * 8 7 6 10 10 H 1.08997 * 109.47201 * 305.18590 * 9 8 7 11 11 C 1.52999 * 109.46810 * 65.17956 * 9 8 7 12 12 C 1.52991 * 109.47230 * 185.17980 * 9 8 7 13 13 C 1.50701 * 109.47388 * 175.00138 * 12 9 8 14 14 H 1.08004 * 119.99412 * 0.02562 * 13 12 9 15 15 C 1.37877 * 120.00475 * 180.02562 * 13 12 9 16 16 N 1.31511 * 119.99693 * 0.02562 * 15 13 12 17 17 Si 1.86801 * 120.00217 * 179.97438 * 15 13 12 18 18 H 1.48501 * 109.47008 * 0.02562 * 17 15 13 19 19 H 1.48495 * 109.47078 * 120.00081 * 17 15 13 20 20 H 1.48501 * 109.46955 * 240.00348 * 17 15 13 21 21 C 1.46897 * 110.99741 * 72.24910 * 7 6 4 22 22 C 1.53006 * 117.49769 * 249.98407 * 21 7 6 23 23 C 1.53001 * 117.49931 * 181.32834 * 21 7 6 24 24 H 1.08998 * 109.47025 * 300.00205 * 1 2 3 25 25 H 1.09005 * 109.47191 * 59.99750 * 1 2 3 26 26 H 1.08996 * 109.47239 * 180.02562 * 1 2 3 27 27 H 1.08998 * 109.47025 * 239.99794 * 2 1 3 28 28 H 1.08995 * 109.47154 * 120.00037 * 2 1 3 29 29 H 1.08999 * 109.47108 * 65.17098 * 6 4 3 30 30 H 1.09001 * 109.47367 * 305.17076 * 6 4 3 31 31 H 1.09004 * 109.46979 * 315.80816 * 8 7 6 32 32 H 1.08998 * 109.47287 * 195.80948 * 8 7 6 33 33 H 1.09001 * 109.46912 * 65.02057 * 11 9 8 34 34 H 1.09003 * 109.47132 * 185.01835 * 11 9 8 35 35 H 1.08998 * 109.47453 * 305.01617 * 11 9 8 36 36 H 1.09004 * 109.47393 * 55.00641 * 12 9 8 37 37 H 1.08998 * 109.47360 * 295.00233 * 12 9 8 38 38 H 0.97001 * 119.99806 * 179.97438 * 16 15 13 39 39 H 1.09001 * 115.55052 * 35.65349 * 21 7 6 40 40 H 1.08998 * 117.49974 * 0.02562 * 22 21 7 41 41 H 1.08996 * 117.50027 * 145.02044 * 22 21 7 42 42 H 1.08997 * 117.49548 * 214.97907 * 23 21 7 43 43 H 1.08999 * 117.49676 * 359.96892 * 23 21 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0140 1.3689 0.0000 4 6 3.3447 1.5448 0.0005 5 8 4.0808 0.5865 0.0015 6 6 3.9208 2.9373 0.0000 7 7 5.3827 2.8625 -0.1240 8 6 6.0088 4.1372 0.2515 9 6 5.9973 4.2820 1.7746 10 1 4.9773 4.1709 2.1424 11 6 6.8841 3.2013 2.3962 12 6 6.5308 5.6632 2.1596 13 6 6.4053 5.8529 3.6494 14 1 5.9872 5.0666 4.2604 15 6 6.8241 7.0301 4.2322 16 7 7.3327 7.9877 3.4880 17 14 6.6678 7.2654 6.0788 18 1 6.0683 6.0490 6.6838 19 1 8.0129 7.4971 6.6638 20 1 5.7986 8.4369 6.3566 21 6 5.7760 2.4626 -1.4817 22 6 6.3797 1.0680 -1.6603 23 6 7.2711 2.3077 -1.7673 24 1 -0.3633 0.5139 0.8900 25 1 -0.3634 0.5139 -0.8900 26 1 -0.3633 -1.0276 0.0005 27 1 1.8933 -0.5139 -0.8900 28 1 1.8933 -0.5138 0.8899 29 1 3.6605 3.4386 0.9322 30 1 3.5131 3.4989 -0.8406 31 1 5.4526 4.9609 -0.1960 32 1 7.0378 4.1562 -0.1076 33 1 7.9198 3.3658 2.0990 34 1 6.8061 3.2477 3.4825 35 1 6.5582 2.2204 2.0502 36 1 5.9536 6.4319 1.6457 37 1 7.5788 5.7416 1.8704 38 1 7.6270 8.8161 3.8980 39 1 5.1471 2.8455 -2.2854 40 1 6.4846 0.4472 -0.7706 41 1 6.1482 0.5337 -2.5817 42 1 7.6257 2.5885 -2.7590 43 1 7.9629 2.5032 -0.9480 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000602447478.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:38:03 Heat of formation + Delta-G solvation = -85.286665 kcal Electronic energy + Delta-G solvation = -21209.587072 eV Core-core repulsion = 18061.873607 eV Total energy + Delta-G solvation = -3147.713466 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 269.178 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -41.47644 -39.63729 -37.44884 -37.00510 -35.03375 -33.70848 -32.57402 -29.48904 -28.49963 -26.59350 -24.67646 -24.05354 -23.13651 -22.27511 -21.23363 -20.40377 -18.84113 -18.36438 -17.82783 -17.67147 -16.64818 -16.41968 -16.14370 -15.56453 -15.31427 -15.01825 -14.57229 -14.23814 -14.18895 -13.66822 -13.54491 -13.39171 -13.18026 -13.01175 -12.80757 -12.75640 -12.53103 -12.46827 -12.31155 -12.16332 -12.08481 -11.48847 -11.43734 -11.39037 -11.28506 -11.17829 -11.04003 -10.72909 -10.51020 -9.27368 -8.15437 -6.23589 1.28774 1.40455 1.41688 1.53976 1.60520 2.43437 2.81891 2.95333 3.18446 3.80222 3.99075 4.03886 4.06567 4.10281 4.12877 4.20932 4.26133 4.36690 4.39633 4.44856 4.58836 4.70583 4.83082 4.86753 4.90445 4.94369 4.94484 5.03300 5.15592 5.17416 5.29778 5.40510 5.47025 5.49418 5.52310 5.57340 5.81747 5.91556 5.95695 6.14735 6.34497 6.88829 6.92417 7.44531 8.96604 Molecular weight = 269.18amu Principal moments of inertia in cm(-1) A = 0.017933 B = 0.004437 C = 0.003779 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1561.006849 B = 6309.465733 C = 7407.853725 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C 0.056 3.944 3 O -0.368 6.368 4 C 0.465 3.535 5 O -0.508 6.508 6 C 0.063 3.937 7 N -0.504 5.504 8 C 0.077 3.923 9 C -0.071 4.071 10 H 0.054 0.946 11 C -0.112 4.112 12 C 0.035 3.965 13 C -0.527 4.527 14 H 0.057 0.943 15 C 0.001 3.999 16 N -0.933 5.933 17 Si 0.957 3.043 18 H -0.264 1.264 19 H -0.281 1.281 20 H -0.279 1.279 21 C -0.008 4.008 22 C -0.144 4.144 23 C -0.169 4.169 24 H 0.065 0.935 25 H 0.069 0.931 26 H 0.099 0.901 27 H 0.069 0.931 28 H 0.063 0.937 29 H 0.118 0.882 30 H 0.096 0.904 31 H 0.039 0.961 32 H 0.076 0.924 33 H 0.035 0.965 34 H 0.035 0.965 35 H 0.057 0.943 36 H -0.008 1.008 37 H -0.008 1.008 38 H 0.261 0.739 39 H 0.099 0.901 40 H 0.082 0.918 41 H 0.101 0.899 42 H 0.114 0.886 43 H 0.087 0.913 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.451 -14.513 -11.478 21.251 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.017 4.017 3 O -0.286 6.286 4 C 0.307 3.693 5 O -0.395 6.395 6 C -0.066 4.066 7 N -0.229 5.229 8 C -0.049 4.049 9 C -0.090 4.090 10 H 0.072 0.928 11 C -0.169 4.169 12 C -0.003 4.003 13 C -0.565 4.565 14 H 0.076 0.924 15 C -0.197 4.197 16 N -0.574 5.574 17 Si 0.782 3.218 18 H -0.188 1.188 19 H -0.207 1.207 20 H -0.204 1.204 21 C -0.116 4.116 22 C -0.181 4.181 23 C -0.206 4.206 24 H 0.084 0.916 25 H 0.088 0.912 26 H 0.118 0.882 27 H 0.088 0.912 28 H 0.081 0.919 29 H 0.136 0.864 30 H 0.114 0.886 31 H 0.057 0.943 32 H 0.095 0.905 33 H 0.054 0.946 34 H 0.054 0.946 35 H 0.076 0.924 36 H 0.011 0.989 37 H 0.010 0.990 38 H 0.070 0.930 39 H 0.116 0.884 40 H 0.101 0.899 41 H 0.120 0.880 42 H 0.132 0.868 43 H 0.105 0.895 Dipole moment (debyes) X Y Z Total from point charges -10.028 -15.038 -11.142 21.233 hybrid contribution -0.036 0.986 0.565 1.137 sum -10.064 -14.052 -10.577 20.264 Atomic orbital electron populations 1.21819 0.90568 1.04282 1.03623 1.23216 0.96900 0.79287 1.02331 1.86494 1.24148 1.33722 1.84195 1.23728 0.80509 0.92800 0.72266 1.90628 1.60674 1.43365 1.44804 1.21663 0.88656 0.90436 1.05855 1.61269 1.05834 1.31567 1.24229 1.22084 0.99309 0.87888 0.95625 1.21033 0.98894 0.95577 0.93485 0.92785 1.21455 0.98315 0.97867 0.99288 1.18999 0.94491 0.91816 0.94992 1.21656 1.40003 1.00561 0.94275 0.92435 1.25876 0.95151 0.95939 1.02702 1.70093 1.43577 1.06654 1.37123 0.85522 0.77795 0.78270 0.80222 1.18847 1.20668 1.20448 1.22572 0.97318 1.02194 0.89510 1.22897 1.02326 0.90418 1.02493 1.23121 0.91779 1.02538 1.03183 0.91590 0.91161 0.88202 0.91224 0.91862 0.86396 0.88598 0.94302 0.90544 0.94556 0.94603 0.92433 0.98940 0.99009 0.92974 0.88392 0.89926 0.88038 0.86822 0.89489 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.82 10.29 71.98 0.74 -1.08 16 2 C 0.06 1.05 6.19 71.98 0.45 1.50 16 3 O -0.37 -8.84 10.22 -51.40 -0.53 -9.36 16 4 C 0.46 12.67 7.72 71.24 0.55 13.22 16 5 O -0.51 -16.14 14.08 21.95 0.31 -15.83 16 6 C 0.06 1.63 5.39 85.56 0.46 2.09 16 7 N -0.50 -14.74 3.55 -875.50 -3.11 -17.85 16 8 C 0.08 2.57 4.32 86.30 0.37 2.95 16 9 C -0.07 -2.87 2.38 -10.80 -0.03 -2.90 16 10 H 0.05 2.18 6.65 -2.39 -0.02 2.17 16 11 C -0.11 -4.45 8.87 71.98 0.64 -3.81 16 12 C 0.03 1.78 4.45 29.85 0.13 1.92 16 13 C -0.53 -29.64 8.47 25.60 0.22 -29.42 16 14 H 0.06 3.16 7.06 -2.91 -0.02 3.14 16 15 C 0.00 0.03 5.46 84.66 0.46 0.50 16 16 N -0.93 -56.57 13.29 21.45 0.28 -56.28 16 17 Si 0.96 44.55 29.54 68.60 2.03 46.57 16 18 H -0.26 -11.83 7.11 99.48 0.71 -11.13 16 19 H -0.28 -12.83 7.11 99.48 0.71 -12.12 16 20 H -0.28 -12.63 7.11 99.48 0.71 -11.93 16 21 C -0.01 -0.19 4.61 44.92 0.21 0.01 16 22 C -0.14 -3.53 9.22 30.62 0.28 -3.25 16 23 C -0.17 -3.97 9.52 30.62 0.29 -3.67 16 24 H 0.07 0.86 8.14 -2.39 -0.02 0.84 16 25 H 0.07 0.83 8.14 -2.38 -0.02 0.81 16 26 H 0.10 0.81 8.14 -2.39 -0.02 0.79 16 27 H 0.07 1.26 8.13 -2.39 -0.02 1.24 16 28 H 0.06 1.25 8.13 -2.39 -0.02 1.23 16 29 H 0.12 3.17 6.48 -2.39 -0.02 3.16 16 30 H 0.10 2.05 7.92 -2.39 -0.02 2.03 16 31 H 0.04 1.26 8.00 -2.38 -0.02 1.24 16 32 H 0.08 2.57 6.47 -2.39 -0.02 2.56 16 33 H 0.04 1.43 8.14 -2.39 -0.02 1.41 16 34 H 0.03 1.50 7.10 -2.39 -0.02 1.48 16 35 H 0.06 2.13 7.63 -2.39 -0.02 2.12 16 36 H -0.01 -0.43 8.14 -2.39 -0.02 -0.45 16 37 H -0.01 -0.48 8.14 -2.39 -0.02 -0.50 16 38 H 0.26 14.91 8.31 -92.71 -0.77 14.14 16 39 H 0.10 2.18 7.96 -2.39 -0.02 2.16 16 40 H 0.08 2.45 7.71 -2.39 -0.02 2.43 16 41 H 0.10 2.11 8.14 -2.39 -0.02 2.09 16 42 H 0.11 2.15 8.14 -2.39 -0.02 2.13 16 43 H 0.09 2.32 7.44 -2.39 -0.02 2.30 16 Total: -1.00 -66.09 348.99 4.72 -61.37 By element: Atomic # 1 Polarization: 12.37 SS G_CDS: 0.96 Total: 13.33 kcal Atomic # 6 Polarization: -26.72 SS G_CDS: 4.77 Total: -21.95 kcal Atomic # 7 Polarization: -71.30 SS G_CDS: -2.82 Total: -74.13 kcal Atomic # 8 Polarization: -24.98 SS G_CDS: -0.22 Total: -25.19 kcal Atomic # 14 Polarization: 44.55 SS G_CDS: 2.03 Total: 46.57 kcal Total: -66.09 4.72 -61.37 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000602447478.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -23.921 kcal (2) G-P(sol) polarization free energy of solvation -66.086 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -90.007 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.721 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.366 kcal (6) G-S(sol) free energy of system = (1) + (5) -85.287 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds