Wall clock time and date at job start Mon Mar 30 2020 01:35:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 O 1.45197 * 109.46688 * 2 1 4 4 C 1.34230 * 116.99422 * 179.97438 * 3 2 1 5 5 O 1.20822 * 120.00429 * 0.02562 * 4 3 2 6 6 C 1.50706 * 120.00012 * 180.02562 * 4 3 2 7 7 H 1.08999 * 109.90202 * 300.70241 * 6 4 3 8 8 C 1.53987 * 109.91830 * 61.80144 * 6 4 3 9 9 C 1.54594 * 105.14044 * 120.58224 * 8 6 4 10 10 C 1.54930 * 102.92312 * 21.95545 * 9 8 6 11 11 N 1.47901 * 109.91817 * 179.60254 * 6 4 3 12 12 C 1.46897 * 111.00388 * 94.80003 * 11 6 4 13 13 C 1.53003 * 109.47175 * 169.99787 * 12 11 6 14 14 H 1.08998 * 109.47132 * 305.00164 * 13 12 11 15 15 C 1.52999 * 109.46689 * 64.99891 * 13 12 11 16 16 C 1.52991 * 109.47165 * 184.99991 * 13 12 11 17 17 C 1.50699 * 109.47110 * 174.99967 * 16 13 12 18 18 H 1.07992 * 119.99892 * 0.02562 * 17 16 13 19 19 C 1.37877 * 120.00022 * 179.97438 * 17 16 13 20 20 N 1.31513 * 120.00143 * 180.02562 * 19 17 16 21 21 Si 1.86807 * 120.00000 * 0.02562 * 19 17 16 22 22 H 1.48500 * 109.47036 * 89.99667 * 21 19 17 23 23 H 1.48497 * 109.47253 * 209.99771 * 21 19 17 24 24 H 1.48502 * 109.46840 * 329.99843 * 21 19 17 25 25 H 1.08998 * 109.47032 * 60.00108 * 1 2 3 26 26 H 1.09005 * 109.47278 * 179.97438 * 1 2 3 27 27 H 1.09001 * 109.47337 * 300.00023 * 1 2 3 28 28 H 1.08997 * 109.46697 * 240.00321 * 2 1 3 29 29 H 1.09001 * 109.46765 * 120.00338 * 2 1 3 30 30 H 1.09000 * 110.31166 * 239.49442 * 8 6 4 31 31 H 1.09005 * 110.30894 * 1.66274 * 8 6 4 32 32 H 1.08999 * 110.72754 * 140.31603 * 9 8 6 33 33 H 1.09004 * 110.72046 * 263.42337 * 9 8 6 34 34 H 1.09004 * 110.66683 * 81.01787 * 10 9 8 35 35 H 1.08994 * 110.67119 * 203.98859 * 10 9 8 36 36 H 1.08997 * 109.46857 * 289.99953 * 12 11 6 37 37 H 1.08998 * 109.46742 * 49.99821 * 12 11 6 38 38 H 1.08998 * 109.47662 * 300.00029 * 15 13 12 39 39 H 1.08998 * 109.47111 * 60.00259 * 15 13 12 40 40 H 1.09004 * 109.46988 * 180.02562 * 15 13 12 41 41 H 1.09006 * 109.47263 * 294.99927 * 16 13 12 42 42 H 1.08997 * 109.47376 * 54.99784 * 16 13 12 43 43 H 0.97002 * 119.99925 * 180.02562 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 8 2.0139 1.3690 0.0000 4 6 3.3447 1.5448 0.0005 5 8 4.0807 0.5867 0.0005 6 6 3.9207 2.9374 0.0012 7 1 3.5793 3.4806 -0.8800 8 6 3.4887 3.6833 1.2771 9 6 4.8073 4.0589 1.9914 10 6 5.8463 4.0216 0.8428 11 7 5.3982 2.8715 0.0113 12 6 5.9386 2.9595 -1.3518 13 6 7.4567 3.1390 -1.2881 14 1 7.6946 4.0044 -0.6696 15 6 8.0931 1.8874 -0.6803 16 6 8.0044 3.3553 -2.7001 17 6 9.4797 3.6540 -2.6264 18 1 9.9769 3.6859 -1.6683 19 6 10.1948 3.8855 -3.7822 20 7 11.4823 4.1456 -3.7180 21 14 9.3348 3.8296 -5.4396 22 1 8.8255 5.1826 -5.7789 23 1 10.2960 3.3869 -6.4814 24 1 8.1992 2.8748 -5.3761 25 1 -0.3633 0.5138 -0.8900 26 1 -0.3634 -1.0277 -0.0005 27 1 -0.3634 0.5138 0.8900 28 1 1.8933 -0.5138 -0.8900 29 1 1.8933 -0.5139 0.8900 30 1 2.9291 4.5823 1.0188 31 1 2.8873 3.0316 1.9110 32 1 4.7423 5.0588 2.4204 33 1 5.0517 3.3259 2.7603 34 1 5.8148 4.9455 0.2654 35 1 6.8482 3.8489 1.2357 36 1 5.7034 2.0446 -1.8956 37 1 5.4932 3.8118 -1.8649 38 1 7.7029 1.7332 0.3257 39 1 7.8552 1.0220 -1.2988 40 1 9.1746 2.0154 -0.6344 41 1 7.8452 2.4549 -3.2935 42 1 7.4868 4.1937 -3.1661 43 1 11.9853 4.3088 -4.5312 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000602613355.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:35:33 Heat of formation + Delta-G solvation = -95.169085 kcal Electronic energy + Delta-G solvation = -21351.265110 eV Core-core repulsion = 18203.123111 eV Total energy + Delta-G solvation = -3148.141999 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 269.178 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -40.68056 -38.81879 -36.43427 -35.41677 -32.51110 -31.97759 -30.88158 -29.60574 -27.32887 -25.55484 -24.12824 -22.76681 -22.04683 -21.28052 -20.17608 -18.77096 -17.60795 -16.92107 -16.70768 -16.51064 -15.71379 -14.83780 -14.42369 -14.17082 -14.03162 -13.82400 -13.33317 -13.17763 -12.93501 -12.82125 -12.35076 -12.19099 -12.15317 -11.83890 -11.68645 -11.57757 -11.25477 -11.19752 -10.94086 -10.88320 -10.67450 -10.64112 -10.34065 -10.16296 -9.87752 -9.59870 -9.43043 -9.02767 -8.49449 -8.30018 -5.99956 -3.96690 2.29122 2.48153 3.32512 3.40375 3.44736 4.06787 4.44054 4.47661 4.48854 4.69423 4.73936 4.77816 4.90432 5.04143 5.16945 5.33578 5.36363 5.46434 5.51154 5.53266 5.54482 5.65107 5.69351 5.72417 5.83300 6.00325 6.05836 6.08765 6.33658 6.38829 6.41037 6.59235 6.88280 6.92162 7.04946 7.20046 7.21437 7.33303 7.51496 7.84480 7.87787 8.59596 9.05801 9.63073 11.13492 Molecular weight = 269.18amu Principal moments of inertia in cm(-1) A = 0.024018 B = 0.004227 C = 0.003866 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1165.505145 B = 6623.134483 C = 7241.422274 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C 0.062 3.938 3 O -0.365 6.365 4 C 0.465 3.535 5 O -0.479 6.479 6 C 0.073 3.927 7 H 0.088 0.912 8 C -0.116 4.116 9 C -0.125 4.125 10 C 0.039 3.961 11 N -0.494 5.494 12 C 0.050 3.950 13 C -0.074 4.074 14 H 0.064 0.936 15 C -0.124 4.124 16 C -0.009 4.009 17 C -0.511 4.511 18 H 0.074 0.926 19 C 0.065 3.935 20 N -0.905 5.905 21 Si 0.877 3.123 22 H -0.278 1.278 23 H -0.288 1.288 24 H -0.266 1.266 25 H 0.066 0.934 26 H 0.078 0.922 27 H 0.065 0.935 28 H 0.068 0.932 29 H 0.068 0.932 30 H 0.081 0.919 31 H 0.075 0.925 32 H 0.076 0.924 33 H 0.075 0.925 34 H 0.052 0.948 35 H 0.094 0.906 36 H 0.072 0.928 37 H 0.032 0.968 38 H 0.044 0.956 39 H 0.041 0.959 40 H 0.059 0.941 41 H 0.016 0.984 42 H 0.008 0.992 43 H 0.262 0.738 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.094 -2.790 10.093 24.450 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.012 4.012 3 O -0.283 6.283 4 C 0.305 3.695 5 O -0.363 6.363 6 C -0.038 4.038 7 H 0.105 0.895 8 C -0.154 4.154 9 C -0.163 4.163 10 C -0.088 4.088 11 N -0.219 5.219 12 C -0.077 4.077 13 C -0.092 4.092 14 H 0.082 0.918 15 C -0.182 4.182 16 C -0.047 4.047 17 C -0.549 4.549 18 H 0.092 0.908 19 C -0.136 4.136 20 N -0.545 5.545 21 Si 0.705 3.295 22 H -0.204 1.204 23 H -0.215 1.215 24 H -0.191 1.191 25 H 0.085 0.915 26 H 0.096 0.904 27 H 0.084 0.916 28 H 0.087 0.913 29 H 0.086 0.914 30 H 0.099 0.901 31 H 0.094 0.906 32 H 0.095 0.905 33 H 0.094 0.906 34 H 0.070 0.930 35 H 0.112 0.888 36 H 0.091 0.909 37 H 0.051 0.949 38 H 0.063 0.937 39 H 0.060 0.940 40 H 0.078 0.922 41 H 0.034 0.966 42 H 0.026 0.974 43 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges -21.542 -3.594 10.179 24.095 hybrid contribution -0.582 0.512 -1.522 1.708 sum -22.124 -3.082 8.657 23.956 Atomic orbital electron populations 1.21797 0.92777 1.02838 1.03409 1.22970 0.95137 0.80540 1.02582 1.86483 1.24987 1.32122 1.84704 1.23611 0.80162 0.92681 0.73063 1.90677 1.60137 1.42480 1.42988 1.21962 0.91447 0.89475 1.00871 0.89457 1.22334 0.98488 1.00060 0.94514 1.22546 0.93825 1.01920 0.98047 1.23294 0.99853 0.92033 0.93631 1.64369 1.01907 1.41883 1.13736 1.22599 0.97580 1.00314 0.87227 1.21079 0.90200 0.98563 0.99408 0.91764 1.21598 1.00851 0.96626 0.99101 1.19618 0.97078 0.96006 0.92000 1.21115 0.91671 1.47243 0.94883 0.90790 1.25021 0.94702 0.94809 0.99028 1.69914 1.07048 1.49119 1.28391 0.86818 0.79797 0.78685 0.84218 1.20440 1.21454 1.19073 0.91535 0.90365 0.91558 0.91342 0.91354 0.90082 0.90591 0.90526 0.90598 0.92986 0.88807 0.90917 0.94946 0.93702 0.94023 0.92209 0.96572 0.97412 0.92845 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.00 10.29 37.16 0.38 -0.62 16 2 C 0.06 0.60 6.19 37.16 0.23 0.83 16 3 O -0.37 -4.38 10.18 -39.26 -0.40 -4.78 16 4 C 0.46 6.61 7.08 36.01 0.25 6.86 16 5 O -0.48 -8.45 16.21 -18.75 -0.30 -8.75 16 6 C 0.07 0.93 2.98 -67.80 -0.20 0.73 16 7 H 0.09 1.03 7.57 -51.93 -0.39 0.64 16 8 C -0.12 -1.14 6.53 -25.38 -0.17 -1.30 16 9 C -0.13 -1.26 7.06 -24.87 -0.18 -1.44 16 10 C 0.04 0.51 5.10 -1.74 -0.01 0.50 16 11 N -0.49 -7.50 3.99 -223.71 -0.89 -8.40 16 12 C 0.05 0.87 4.42 -3.82 -0.02 0.85 16 13 C -0.07 -1.49 2.03 -90.62 -0.18 -1.67 16 14 H 0.06 1.29 6.54 -51.93 -0.34 0.95 16 15 C -0.12 -2.53 8.89 37.16 0.33 -2.20 16 16 C -0.01 -0.22 3.52 -27.89 -0.10 -0.32 16 17 C -0.51 -14.57 8.96 -34.44 -0.31 -14.88 16 18 H 0.07 2.26 7.30 -52.49 -0.38 1.87 16 19 C 0.06 1.91 5.47 -17.82 -0.10 1.82 16 20 N -0.91 -28.18 13.96 55.43 0.77 -27.41 16 21 Si 0.88 22.07 27.47 -169.99 -4.67 17.40 16 22 H -0.28 -6.85 7.11 56.52 0.40 -6.45 16 23 H -0.29 -7.21 7.11 56.52 0.40 -6.81 16 24 H -0.27 -6.49 6.54 56.52 0.37 -6.12 16 25 H 0.07 0.44 8.14 -51.93 -0.42 0.01 16 26 H 0.08 0.38 8.14 -51.93 -0.42 -0.04 16 27 H 0.07 0.41 8.14 -51.93 -0.42 -0.01 16 28 H 0.07 0.69 8.13 -51.93 -0.42 0.27 16 29 H 0.07 0.66 8.13 -51.93 -0.42 0.24 16 30 H 0.08 0.64 8.14 -51.93 -0.42 0.22 16 31 H 0.08 0.72 7.67 -51.93 -0.40 0.32 16 32 H 0.08 0.62 8.14 -51.93 -0.42 0.20 16 33 H 0.08 0.78 8.14 -51.93 -0.42 0.36 16 34 H 0.05 0.67 8.01 -51.93 -0.42 0.25 16 35 H 0.09 1.30 7.59 -51.93 -0.39 0.90 16 36 H 0.07 1.34 8.14 -51.93 -0.42 0.92 16 37 H 0.03 0.53 7.81 -51.93 -0.41 0.12 16 38 H 0.04 0.84 7.75 -51.93 -0.40 0.44 16 39 H 0.04 0.85 8.14 -51.93 -0.42 0.43 16 40 H 0.06 1.31 6.95 -51.93 -0.36 0.95 16 41 H 0.02 0.40 7.20 -51.93 -0.37 0.02 16 42 H 0.01 0.18 7.57 -51.93 -0.39 -0.21 16 43 H 0.26 7.65 8.31 -40.82 -0.34 7.31 16 LS Contribution 342.74 15.07 5.17 5.17 Total: -1.00 -32.77 342.74 -8.04 -40.82 By element: Atomic # 1 Polarization: 4.46 SS G_CDS: -7.65 Total: -3.20 kcal Atomic # 6 Polarization: -10.78 SS G_CDS: -0.06 Total: -10.84 kcal Atomic # 7 Polarization: -35.68 SS G_CDS: -0.12 Total: -35.80 kcal Atomic # 8 Polarization: -12.83 SS G_CDS: -0.70 Total: -13.54 kcal Atomic # 14 Polarization: 22.07 SS G_CDS: -4.67 Total: 17.40 kcal Total LS contribution 5.17 Total: 5.17 kcal Total: -32.77 -8.04 -40.82 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000602613355.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -54.354 kcal (2) G-P(sol) polarization free energy of solvation -32.775 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -87.129 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.041 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.815 kcal (6) G-S(sol) free energy of system = (1) + (5) -95.169 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds