Wall clock time and date at job start Mon Mar 30 2020 01:35:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 O 1.45197 * 109.46688 * 2 1 4 4 C 1.34230 * 116.99422 * 179.97438 * 3 2 1 5 5 O 1.20822 * 120.00429 * 0.02562 * 4 3 2 6 6 C 1.50706 * 120.00012 * 180.02562 * 4 3 2 7 7 H 1.08999 * 109.90202 * 300.70241 * 6 4 3 8 8 C 1.53987 * 109.91830 * 61.80144 * 6 4 3 9 9 C 1.54594 * 105.14044 * 120.58224 * 8 6 4 10 10 C 1.54930 * 102.92312 * 21.95545 * 9 8 6 11 11 N 1.47901 * 109.91817 * 179.60254 * 6 4 3 12 12 C 1.46897 * 111.00388 * 94.80003 * 11 6 4 13 13 C 1.53003 * 109.47175 * 169.99787 * 12 11 6 14 14 H 1.08998 * 109.47132 * 305.00164 * 13 12 11 15 15 C 1.52999 * 109.46689 * 64.99891 * 13 12 11 16 16 C 1.52991 * 109.47165 * 184.99991 * 13 12 11 17 17 C 1.50699 * 109.47110 * 174.99967 * 16 13 12 18 18 H 1.07992 * 119.99892 * 0.02562 * 17 16 13 19 19 C 1.37877 * 120.00022 * 179.97438 * 17 16 13 20 20 N 1.31513 * 120.00143 * 180.02562 * 19 17 16 21 21 Si 1.86807 * 120.00000 * 0.02562 * 19 17 16 22 22 H 1.48500 * 109.47036 * 89.99667 * 21 19 17 23 23 H 1.48497 * 109.47253 * 209.99771 * 21 19 17 24 24 H 1.48502 * 109.46840 * 329.99843 * 21 19 17 25 25 H 1.08998 * 109.47032 * 60.00108 * 1 2 3 26 26 H 1.09005 * 109.47278 * 179.97438 * 1 2 3 27 27 H 1.09001 * 109.47337 * 300.00023 * 1 2 3 28 28 H 1.08997 * 109.46697 * 240.00321 * 2 1 3 29 29 H 1.09001 * 109.46765 * 120.00338 * 2 1 3 30 30 H 1.09000 * 110.31166 * 239.49442 * 8 6 4 31 31 H 1.09005 * 110.30894 * 1.66274 * 8 6 4 32 32 H 1.08999 * 110.72754 * 140.31603 * 9 8 6 33 33 H 1.09004 * 110.72046 * 263.42337 * 9 8 6 34 34 H 1.09004 * 110.66683 * 81.01787 * 10 9 8 35 35 H 1.08994 * 110.67119 * 203.98859 * 10 9 8 36 36 H 1.08997 * 109.46857 * 289.99953 * 12 11 6 37 37 H 1.08998 * 109.46742 * 49.99821 * 12 11 6 38 38 H 1.08998 * 109.47662 * 300.00029 * 15 13 12 39 39 H 1.08998 * 109.47111 * 60.00259 * 15 13 12 40 40 H 1.09004 * 109.46988 * 180.02562 * 15 13 12 41 41 H 1.09006 * 109.47263 * 294.99927 * 16 13 12 42 42 H 1.08997 * 109.47376 * 54.99784 * 16 13 12 43 43 H 0.97002 * 119.99925 * 180.02562 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 8 2.0139 1.3690 0.0000 4 6 3.3447 1.5448 0.0005 5 8 4.0807 0.5867 0.0005 6 6 3.9207 2.9374 0.0012 7 1 3.5793 3.4806 -0.8800 8 6 3.4887 3.6833 1.2771 9 6 4.8073 4.0589 1.9914 10 6 5.8463 4.0216 0.8428 11 7 5.3982 2.8715 0.0113 12 6 5.9386 2.9595 -1.3518 13 6 7.4567 3.1390 -1.2881 14 1 7.6946 4.0044 -0.6696 15 6 8.0931 1.8874 -0.6803 16 6 8.0044 3.3553 -2.7001 17 6 9.4797 3.6540 -2.6264 18 1 9.9769 3.6859 -1.6683 19 6 10.1948 3.8855 -3.7822 20 7 11.4823 4.1456 -3.7180 21 14 9.3348 3.8296 -5.4396 22 1 8.8255 5.1826 -5.7789 23 1 10.2960 3.3869 -6.4814 24 1 8.1992 2.8748 -5.3761 25 1 -0.3633 0.5138 -0.8900 26 1 -0.3634 -1.0277 -0.0005 27 1 -0.3634 0.5138 0.8900 28 1 1.8933 -0.5138 -0.8900 29 1 1.8933 -0.5139 0.8900 30 1 2.9291 4.5823 1.0188 31 1 2.8873 3.0316 1.9110 32 1 4.7423 5.0588 2.4204 33 1 5.0517 3.3259 2.7603 34 1 5.8148 4.9455 0.2654 35 1 6.8482 3.8489 1.2357 36 1 5.7034 2.0446 -1.8956 37 1 5.4932 3.8118 -1.8649 38 1 7.7029 1.7332 0.3257 39 1 7.8552 1.0220 -1.2988 40 1 9.1746 2.0154 -0.6344 41 1 7.8452 2.4549 -3.2935 42 1 7.4868 4.1937 -3.1661 43 1 11.9853 4.3088 -4.5312 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000602613355.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:35:32 Heat of formation + Delta-G solvation = -115.258502 kcal Electronic energy + Delta-G solvation = -21352.136253 eV Core-core repulsion = 18203.123111 eV Total energy + Delta-G solvation = -3149.013142 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 269.178 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -41.72950 -39.90978 -37.53213 -36.97769 -34.51404 -32.74079 -32.22490 -30.58799 -29.24058 -26.97512 -25.14470 -24.24250 -23.10676 -22.40775 -21.21746 -20.34158 -18.99353 -18.59658 -17.79566 -17.56641 -16.86926 -16.18311 -15.79754 -15.76050 -15.15805 -15.03533 -14.71075 -14.35367 -14.24202 -13.86861 -13.65273 -13.54167 -13.41328 -12.98436 -12.86028 -12.67924 -12.55048 -12.44364 -12.36167 -12.15229 -12.07098 -11.82180 -11.75854 -11.51345 -11.43599 -11.25420 -11.19282 -11.02964 -10.73959 -9.43399 -8.26631 -6.28871 1.22214 1.34047 1.37008 1.48498 1.55211 2.36960 2.98042 3.08474 3.53243 3.57224 3.90315 3.97582 4.00893 4.09407 4.10991 4.19949 4.28396 4.35090 4.41344 4.55843 4.67599 4.76988 4.83116 4.85365 4.90347 4.90952 4.93124 5.02317 5.06548 5.12182 5.15127 5.26539 5.34703 5.35828 5.46013 5.48330 5.65135 5.69269 5.86721 5.97141 6.33833 6.78190 6.83371 7.34569 8.90095 Molecular weight = 269.18amu Principal moments of inertia in cm(-1) A = 0.024018 B = 0.004227 C = 0.003866 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1165.505145 B = 6623.134483 C = 7241.422274 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C 0.053 3.947 3 O -0.360 6.360 4 C 0.466 3.534 5 O -0.522 6.522 6 C 0.069 3.931 7 H 0.103 0.897 8 C -0.107 4.107 9 C -0.117 4.117 10 C 0.034 3.966 11 N -0.513 5.513 12 C 0.063 3.937 13 C -0.068 4.068 14 H 0.064 0.936 15 C -0.114 4.114 16 C -0.006 4.006 17 C -0.517 4.517 18 H 0.036 0.964 19 C 0.003 3.997 20 N -0.953 5.953 21 Si 0.946 3.054 22 H -0.264 1.264 23 H -0.286 1.286 24 H -0.252 1.252 25 H 0.068 0.932 26 H 0.097 0.903 27 H 0.073 0.927 28 H 0.060 0.940 29 H 0.066 0.934 30 H 0.109 0.891 31 H 0.081 0.919 32 H 0.103 0.897 33 H 0.070 0.930 34 H 0.057 0.943 35 H 0.078 0.922 36 H 0.058 0.942 37 H 0.047 0.953 38 H 0.058 0.942 39 H 0.034 0.966 40 H 0.032 0.968 41 H 0.012 0.988 42 H 0.019 0.981 43 H 0.265 0.735 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -25.353 -2.083 9.991 27.330 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.021 4.021 3 O -0.277 6.277 4 C 0.309 3.691 5 O -0.410 6.410 6 C -0.042 4.042 7 H 0.120 0.880 8 C -0.145 4.145 9 C -0.155 4.155 10 C -0.093 4.093 11 N -0.238 5.238 12 C -0.065 4.065 13 C -0.086 4.086 14 H 0.082 0.918 15 C -0.171 4.171 16 C -0.044 4.044 17 C -0.555 4.555 18 H 0.055 0.945 19 C -0.193 4.193 20 N -0.594 5.594 21 Si 0.770 3.230 22 H -0.189 1.189 23 H -0.212 1.212 24 H -0.176 1.176 25 H 0.087 0.913 26 H 0.116 0.884 27 H 0.092 0.908 28 H 0.079 0.921 29 H 0.084 0.916 30 H 0.127 0.873 31 H 0.099 0.901 32 H 0.121 0.879 33 H 0.089 0.911 34 H 0.075 0.925 35 H 0.096 0.904 36 H 0.077 0.923 37 H 0.065 0.935 38 H 0.077 0.923 39 H 0.053 0.947 40 H 0.051 0.949 41 H 0.030 0.970 42 H 0.037 0.963 43 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges -24.840 -2.878 10.098 26.968 hybrid contribution 0.453 0.252 -1.392 1.486 sum -24.387 -2.626 8.705 26.027 Atomic orbital electron populations 1.21807 0.90034 1.04308 1.03860 1.23249 0.97240 0.79453 1.02139 1.86487 1.23727 1.33425 1.84040 1.23982 0.80545 0.92841 0.71757 1.90661 1.61183 1.43887 1.45245 1.22128 0.89734 0.89109 1.03184 0.87959 1.22375 0.98452 1.00822 0.92876 1.22527 0.92790 1.03370 0.96771 1.23349 1.00101 0.91374 0.94479 1.64242 1.03866 1.43304 1.12404 1.22291 0.95128 1.00164 0.88874 1.20936 0.92555 0.98227 0.96928 0.91789 1.21471 0.99077 0.96668 0.99883 1.19557 0.94351 0.95930 0.94519 1.21407 0.94019 1.46614 0.93478 0.94530 1.25970 0.95356 0.94517 1.03505 1.70067 1.08913 1.50728 1.29704 0.85717 0.78924 0.79624 0.78734 1.18874 1.21173 1.17557 0.91274 0.88402 0.90846 0.92141 0.91603 0.87294 0.90071 0.87877 0.91130 0.92501 0.90392 0.92309 0.93530 0.92296 0.94655 0.94912 0.96982 0.96291 0.92647 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.56 10.29 71.98 0.74 -0.82 16 2 C 0.05 0.97 6.19 71.98 0.45 1.41 16 3 O -0.36 -8.00 10.18 -51.41 -0.52 -8.52 16 4 C 0.47 12.66 7.08 71.24 0.50 13.16 16 5 O -0.52 -18.35 16.21 21.97 0.36 -17.99 16 6 C 0.07 1.59 2.98 44.31 0.13 1.72 16 7 H 0.10 2.10 7.57 -2.39 -0.02 2.08 16 8 C -0.11 -1.74 6.53 31.47 0.21 -1.53 16 9 C -0.12 -2.02 7.06 31.80 0.22 -1.80 16 10 C 0.03 0.82 5.10 86.59 0.44 1.26 16 11 N -0.51 -14.89 3.99 -861.68 -3.44 -18.33 16 12 C 0.06 2.11 4.42 86.30 0.38 2.49 16 13 C -0.07 -2.73 2.03 -10.80 -0.02 -2.75 16 14 H 0.06 2.57 6.54 -2.39 -0.02 2.56 16 15 C -0.11 -4.73 8.89 71.98 0.64 -4.09 16 16 C -0.01 -0.27 3.52 29.84 0.10 -0.17 16 17 C -0.52 -30.17 8.96 25.60 0.23 -29.94 16 18 H 0.04 2.34 7.30 -2.91 -0.02 2.32 16 19 C 0.00 0.16 5.47 84.65 0.46 0.62 16 20 N -0.95 -60.77 13.96 21.45 0.30 -60.47 16 21 Si 0.95 45.24 27.47 68.60 1.88 47.12 16 22 H -0.26 -11.95 7.11 99.48 0.71 -11.24 16 23 H -0.29 -13.47 7.11 99.48 0.71 -12.76 16 24 H -0.25 -11.37 6.54 99.48 0.65 -10.72 16 25 H 0.07 0.73 8.14 -2.39 -0.02 0.71 16 26 H 0.10 0.70 8.14 -2.38 -0.02 0.68 16 27 H 0.07 0.71 8.14 -2.39 -0.02 0.69 16 28 H 0.06 1.20 8.13 -2.39 -0.02 1.18 16 29 H 0.07 1.23 8.13 -2.39 -0.02 1.21 16 30 H 0.11 1.21 8.14 -2.39 -0.02 1.19 16 31 H 0.08 1.26 7.67 -2.38 -0.02 1.25 16 32 H 0.10 1.27 8.14 -2.39 -0.02 1.26 16 33 H 0.07 1.31 8.14 -2.39 -0.02 1.29 16 34 H 0.06 1.33 8.01 -2.38 -0.02 1.31 16 35 H 0.08 2.12 7.59 -2.39 -0.02 2.10 16 36 H 0.06 2.12 8.14 -2.39 -0.02 2.10 16 37 H 0.05 1.41 7.81 -2.39 -0.02 1.39 16 38 H 0.06 2.25 7.75 -2.39 -0.02 2.23 16 39 H 0.03 1.47 8.14 -2.39 -0.02 1.45 16 40 H 0.03 1.49 6.95 -2.38 -0.02 1.48 16 41 H 0.01 0.58 7.20 -2.38 -0.02 0.56 16 42 H 0.02 0.86 7.57 -2.39 -0.02 0.85 16 43 H 0.26 15.77 8.31 -92.71 -0.77 15.00 16 Total: -1.00 -72.40 342.74 3.97 -68.43 By element: Atomic # 1 Polarization: 9.27 SS G_CDS: 0.90 Total: 10.17 kcal Atomic # 6 Polarization: -24.90 SS G_CDS: 4.49 Total: -20.41 kcal Atomic # 7 Polarization: -75.66 SS G_CDS: -3.14 Total: -78.80 kcal Atomic # 8 Polarization: -26.35 SS G_CDS: -0.17 Total: -26.52 kcal Atomic # 14 Polarization: 45.24 SS G_CDS: 1.88 Total: 47.12 kcal Total: -72.40 3.97 -68.43 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000602613355.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -46.829 kcal (2) G-P(sol) polarization free energy of solvation -72.396 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -119.225 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.966 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.430 kcal (6) G-S(sol) free energy of system = (1) + (5) -115.259 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds