Wall clock time and date at job start Mon Mar 30 2020 01:35:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 O 1.45202 * 109.47181 * 2 1 4 4 C 1.34228 * 117.00032 * 179.97438 * 3 2 1 5 5 O 1.20822 * 119.99717 * 0.02562 * 4 3 2 6 6 C 1.50693 * 119.99985 * 179.97438 * 4 3 2 7 7 H 1.09001 * 109.88021 * 351.25210 * 6 4 3 8 8 C 1.54323 * 109.88898 * 112.45109 * 6 4 3 9 9 C 1.55135 * 103.01686 * 141.68657 * 8 6 4 10 10 C 1.54902 * 101.65836 * 324.34869 * 9 8 6 11 11 N 1.47448 * 109.88848 * 230.22155 * 6 4 3 12 12 C 1.46902 * 110.99780 * 3.85174 * 11 6 4 13 13 C 1.52994 * 109.46663 * 164.13351 * 12 11 6 14 14 H 1.09001 * 109.47404 * 55.00135 * 13 12 11 15 15 C 1.53001 * 109.47610 * 294.99832 * 13 12 11 16 16 C 1.53001 * 109.47089 * 174.99872 * 13 12 11 17 17 C 1.50697 * 109.47692 * 185.00022 * 16 13 12 18 18 H 1.08008 * 119.99773 * 359.97438 * 17 16 13 19 19 C 1.37877 * 120.00634 * 180.02562 * 17 16 13 20 20 N 1.31513 * 119.99577 * 359.97438 * 19 17 16 21 21 Si 1.86797 * 120.00306 * 179.97438 * 19 17 16 22 22 H 1.48503 * 109.47059 * 89.99610 * 21 19 17 23 23 H 1.48496 * 109.47366 * 209.99837 * 21 19 17 24 24 H 1.48500 * 109.47006 * 330.00089 * 21 19 17 25 25 H 1.09007 * 109.46786 * 59.99936 * 1 2 3 26 26 H 1.08998 * 109.47130 * 179.97438 * 1 2 3 27 27 H 1.08997 * 109.47277 * 299.99944 * 1 2 3 28 28 H 1.08997 * 109.47277 * 240.00056 * 2 1 3 29 29 H 1.08997 * 109.46847 * 119.99994 * 2 1 3 30 30 H 1.08994 * 110.70513 * 260.07063 * 8 6 4 31 31 H 1.09002 * 110.69994 * 23.30818 * 8 6 4 32 32 H 1.09005 * 110.99089 * 82.44323 * 9 8 6 33 33 H 1.09001 * 110.99230 * 206.21555 * 9 8 6 34 34 H 1.09000 * 110.37467 * 278.23845 * 10 9 8 35 35 H 1.09006 * 110.37636 * 155.89688 * 10 9 8 36 36 H 1.08999 * 109.47074 * 44.13654 * 12 11 6 37 37 H 1.08993 * 109.46833 * 284.13221 * 12 11 6 38 38 H 1.09005 * 109.46476 * 60.00235 * 15 13 12 39 39 H 1.09001 * 109.46984 * 300.00560 * 15 13 12 40 40 H 1.08998 * 109.47622 * 180.02562 * 15 13 12 41 41 H 1.08995 * 109.47310 * 305.00374 * 16 13 12 42 42 H 1.09001 * 109.47166 * 65.00037 * 16 13 12 43 43 H 0.96995 * 120.00345 * 179.97438 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0140 1.3690 0.0000 4 6 3.3447 1.5448 0.0005 5 8 4.0807 0.5866 0.0005 6 6 3.9207 2.9373 0.0000 7 1 3.1263 3.6670 -0.1567 8 6 4.6329 3.2115 1.3414 9 6 5.8786 4.0315 0.9144 10 6 6.2363 3.3742 -0.4419 11 7 4.9327 3.0611 -1.0652 12 6 5.0122 1.8293 -1.8615 13 6 5.7559 2.1137 -3.1679 14 1 6.7294 2.5503 -2.9443 15 6 4.9410 3.0922 -4.0162 16 6 5.9483 0.8070 -3.9402 17 6 6.7864 1.0663 -5.1655 18 1 7.1456 2.0635 -5.3730 19 6 7.0939 0.0307 -6.0223 20 7 6.6561 -1.1834 -5.7700 21 14 8.1322 0.3523 -7.5415 22 1 9.5678 0.1724 -7.2070 23 1 7.7502 -0.6019 -8.6132 24 1 7.9040 1.7423 -8.0118 25 1 -0.3633 0.5139 -0.8901 26 1 -0.3633 -1.0276 -0.0005 27 1 -0.3634 0.5138 0.8900 28 1 1.8934 -0.5138 -0.8900 29 1 1.8933 -0.5138 0.8900 30 1 3.9949 3.7963 2.0039 31 1 4.9310 2.2772 1.8173 32 1 5.6273 5.0841 0.7839 33 1 6.6897 3.9121 1.6328 34 1 6.8094 2.4609 -0.2815 35 1 6.7973 4.0707 -1.0650 36 1 4.0057 1.4761 -2.0859 37 1 5.5478 1.0659 -1.2973 38 1 4.8040 4.0231 -3.4660 39 1 3.9676 2.6557 -4.2399 40 1 5.4706 3.2945 -4.9471 41 1 6.4512 0.0793 -3.3034 42 1 4.9762 0.4162 -4.2410 43 1 6.8720 -1.9119 -6.3729 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000602613356.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:35:35 Heat of formation + Delta-G solvation = -94.870370 kcal Electronic energy + Delta-G solvation = -21715.439386 eV Core-core repulsion = 18567.310340 eV Total energy + Delta-G solvation = -3148.129046 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 269.178 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -41.04015 -38.61145 -36.32632 -35.28358 -32.47668 -31.87883 -30.69127 -29.57362 -26.76381 -25.40779 -24.12308 -22.85154 -22.17473 -21.36747 -19.98544 -19.00286 -17.73113 -16.66246 -16.46409 -15.95230 -15.72476 -14.93255 -14.48793 -14.28484 -14.25415 -13.34344 -13.17139 -12.95396 -12.86510 -12.76501 -12.17871 -12.15115 -11.81098 -11.70078 -11.64330 -11.34350 -11.24838 -11.09589 -10.88164 -10.81088 -10.69592 -10.55501 -10.35134 -10.23203 -10.05280 -9.59078 -9.07946 -8.90654 -8.27722 -8.13353 -5.92204 -3.93378 2.19908 2.65603 3.36140 3.42115 3.45687 4.07673 4.39435 4.52403 4.61366 4.69288 4.84982 4.90727 5.01519 5.19901 5.27890 5.41249 5.43239 5.56362 5.61392 5.63019 5.67576 5.74242 5.78192 5.83690 6.00628 6.10464 6.13336 6.22517 6.38238 6.47279 6.63453 6.73095 6.98217 7.03322 7.20784 7.27800 7.39015 7.76697 7.81477 7.92257 8.08538 8.52175 9.13121 9.69552 11.19444 Molecular weight = 269.18amu Principal moments of inertia in cm(-1) A = 0.018145 B = 0.005023 C = 0.004219 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1542.715426 B = 5573.471207 C = 6635.299196 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C 0.059 3.941 3 O -0.360 6.360 4 C 0.448 3.552 5 O -0.497 6.497 6 C 0.080 3.920 7 H 0.113 0.887 8 C -0.129 4.129 9 C -0.125 4.125 10 C 0.039 3.961 11 N -0.498 5.498 12 C 0.046 3.954 13 C -0.078 4.078 14 H 0.056 0.944 15 C -0.123 4.123 16 C 0.028 3.972 17 C -0.510 4.510 18 H 0.056 0.944 19 C 0.055 3.945 20 N -0.897 5.897 21 Si 0.890 3.110 22 H -0.281 1.281 23 H -0.287 1.287 24 H -0.274 1.274 25 H 0.067 0.933 26 H 0.078 0.922 27 H 0.064 0.936 28 H 0.073 0.927 29 H 0.067 0.933 30 H 0.083 0.917 31 H 0.075 0.925 32 H 0.079 0.921 33 H 0.077 0.923 34 H 0.054 0.946 35 H 0.088 0.912 36 H 0.058 0.942 37 H 0.061 0.939 38 H 0.042 0.958 39 H 0.036 0.964 40 H 0.054 0.946 41 H 0.013 0.987 42 H 0.013 0.987 43 H 0.259 0.741 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.026 8.281 15.680 19.897 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.015 4.015 3 O -0.276 6.276 4 C 0.290 3.710 5 O -0.384 6.384 6 C -0.030 4.030 7 H 0.131 0.869 8 C -0.167 4.167 9 C -0.163 4.163 10 C -0.089 4.089 11 N -0.224 5.224 12 C -0.081 4.081 13 C -0.097 4.097 14 H 0.074 0.926 15 C -0.181 4.181 16 C -0.009 4.009 17 C -0.549 4.549 18 H 0.074 0.926 19 C -0.146 4.146 20 N -0.537 5.537 21 Si 0.718 3.282 22 H -0.208 1.208 23 H -0.213 1.213 24 H -0.199 1.199 25 H 0.086 0.914 26 H 0.097 0.903 27 H 0.083 0.917 28 H 0.091 0.909 29 H 0.086 0.914 30 H 0.102 0.898 31 H 0.093 0.907 32 H 0.097 0.903 33 H 0.096 0.904 34 H 0.073 0.927 35 H 0.107 0.893 36 H 0.077 0.923 37 H 0.079 0.921 38 H 0.061 0.939 39 H 0.056 0.944 40 H 0.073 0.927 41 H 0.031 0.969 42 H 0.032 0.968 43 H 0.068 0.932 Dipole moment (debyes) X Y Z Total from point charges -8.989 8.159 15.259 19.499 hybrid contribution 0.736 -0.972 -0.450 1.300 sum -8.253 7.187 14.808 18.413 Atomic orbital electron populations 1.21793 0.92697 1.02900 1.03386 1.23030 0.95302 0.80411 1.02778 1.86517 1.24836 1.32364 1.83907 1.24377 0.80700 0.93296 0.72635 1.90720 1.59959 1.43274 1.44400 1.22492 0.96668 0.90136 0.93659 0.86915 1.22784 0.97505 1.01313 0.95133 1.22706 0.96895 0.99812 0.96898 1.23191 0.91319 1.00249 0.94114 1.64272 1.05192 1.35292 1.17627 1.22951 1.00750 0.89008 0.95341 1.21200 0.97073 0.99074 0.92378 0.92574 1.21602 0.99060 0.97932 0.99477 1.19106 0.96793 0.90723 0.94306 1.21233 1.31652 0.94530 1.07467 0.92555 1.25025 0.96271 0.95205 0.98074 1.69977 1.46005 1.00018 1.37698 0.86631 0.80615 0.78017 0.82961 1.20771 1.21338 1.19874 0.91353 0.90309 0.91695 0.90882 0.91445 0.89835 0.90678 0.90252 0.90424 0.92748 0.89347 0.92335 0.92117 0.93869 0.94435 0.92676 0.96904 0.96823 0.93153 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.33 10.29 37.16 0.38 -0.94 16 2 C 0.06 0.71 6.19 37.16 0.23 0.94 16 3 O -0.36 -5.04 10.22 -39.25 -0.40 -5.45 16 4 C 0.45 6.92 5.01 36.00 0.18 7.10 16 5 O -0.50 -9.18 13.52 -18.75 -0.25 -9.43 16 6 C 0.08 1.07 3.88 -67.87 -0.26 0.80 16 7 H 0.11 1.32 8.14 -51.93 -0.42 0.90 16 8 C -0.13 -1.36 6.46 -24.91 -0.16 -1.52 16 9 C -0.13 -1.26 7.08 -24.60 -0.17 -1.43 16 10 C 0.04 0.53 6.01 -2.30 -0.01 0.52 16 11 N -0.50 -7.79 4.57 -224.73 -1.03 -8.82 16 12 C 0.05 0.90 2.79 -3.83 -0.01 0.89 16 13 C -0.08 -1.71 2.39 -90.62 -0.22 -1.93 16 14 H 0.06 1.23 7.59 -51.93 -0.39 0.83 16 15 C -0.12 -2.51 8.89 37.16 0.33 -2.18 16 16 C 0.03 0.77 4.45 -27.88 -0.12 0.64 16 17 C -0.51 -14.76 8.41 -34.44 -0.29 -15.05 16 18 H 0.06 1.58 7.06 -52.48 -0.37 1.21 16 19 C 0.05 1.61 5.46 -17.82 -0.10 1.52 16 20 N -0.90 -27.80 13.29 55.43 0.74 -27.07 16 21 Si 0.89 22.17 29.54 -169.99 -5.02 17.15 16 22 H -0.28 -6.91 7.11 56.52 0.40 -6.51 16 23 H -0.29 -7.10 7.11 56.52 0.40 -6.70 16 24 H -0.27 -6.66 7.11 56.52 0.40 -6.26 16 25 H 0.07 0.61 8.14 -51.92 -0.42 0.19 16 26 H 0.08 0.56 8.14 -51.93 -0.42 0.14 16 27 H 0.06 0.51 8.14 -51.93 -0.42 0.09 16 28 H 0.07 0.98 8.13 -51.93 -0.42 0.56 16 29 H 0.07 0.78 8.13 -51.93 -0.42 0.35 16 30 H 0.08 0.67 8.14 -51.93 -0.42 0.25 16 31 H 0.07 0.87 7.75 -51.93 -0.40 0.47 16 32 H 0.08 0.70 8.14 -51.93 -0.42 0.28 16 33 H 0.08 0.67 8.14 -51.93 -0.42 0.25 16 34 H 0.05 0.82 7.53 -51.93 -0.39 0.43 16 35 H 0.09 1.18 8.14 -51.93 -0.42 0.76 16 36 H 0.06 1.20 6.49 -51.93 -0.34 0.87 16 37 H 0.06 1.30 6.08 -51.93 -0.32 0.98 16 38 H 0.04 0.78 7.75 -51.93 -0.40 0.37 16 39 H 0.04 0.76 8.14 -51.93 -0.42 0.34 16 40 H 0.05 1.18 6.95 -51.93 -0.36 0.82 16 41 H 0.01 0.37 8.14 -51.93 -0.42 -0.05 16 42 H 0.01 0.39 8.14 -51.93 -0.42 -0.03 16 43 H 0.26 7.56 8.31 -40.82 -0.34 7.22 16 LS Contribution 341.07 15.07 5.14 5.14 Total: -1.00 -32.69 341.07 -8.66 -41.35 By element: Atomic # 1 Polarization: 5.37 SS G_CDS: -7.60 Total: -2.23 kcal Atomic # 6 Polarization: -10.41 SS G_CDS: -0.23 Total: -10.64 kcal Atomic # 7 Polarization: -35.59 SS G_CDS: -0.29 Total: -35.88 kcal Atomic # 8 Polarization: -14.22 SS G_CDS: -0.65 Total: -14.88 kcal Atomic # 14 Polarization: 22.17 SS G_CDS: -5.02 Total: 17.15 kcal Total LS contribution 5.14 Total: 5.14 kcal Total: -32.69 -8.66 -41.35 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000602613356.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -53.524 kcal (2) G-P(sol) polarization free energy of solvation -32.688 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -86.212 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.658 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.347 kcal (6) G-S(sol) free energy of system = (1) + (5) -94.870 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds