Wall clock time and date at job start Mon Mar 30 2020 01:35:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 O 1.45202 * 109.47181 * 2 1 4 4 C 1.34228 * 117.00032 * 179.97438 * 3 2 1 5 5 O 1.20822 * 119.99717 * 0.02562 * 4 3 2 6 6 C 1.50693 * 119.99985 * 179.97438 * 4 3 2 7 7 H 1.09001 * 109.88021 * 351.25210 * 6 4 3 8 8 C 1.54323 * 109.88898 * 112.45109 * 6 4 3 9 9 C 1.55135 * 103.01686 * 141.68657 * 8 6 4 10 10 C 1.54902 * 101.65836 * 324.34869 * 9 8 6 11 11 N 1.47448 * 109.88848 * 230.22155 * 6 4 3 12 12 C 1.46902 * 110.99780 * 3.85174 * 11 6 4 13 13 C 1.52994 * 109.46663 * 164.13351 * 12 11 6 14 14 H 1.09001 * 109.47404 * 55.00135 * 13 12 11 15 15 C 1.53001 * 109.47610 * 294.99832 * 13 12 11 16 16 C 1.53001 * 109.47089 * 174.99872 * 13 12 11 17 17 C 1.50697 * 109.47692 * 185.00022 * 16 13 12 18 18 H 1.08008 * 119.99773 * 359.97438 * 17 16 13 19 19 C 1.37877 * 120.00634 * 180.02562 * 17 16 13 20 20 N 1.31513 * 119.99577 * 359.97438 * 19 17 16 21 21 Si 1.86797 * 120.00306 * 179.97438 * 19 17 16 22 22 H 1.48503 * 109.47059 * 89.99610 * 21 19 17 23 23 H 1.48496 * 109.47366 * 209.99837 * 21 19 17 24 24 H 1.48500 * 109.47006 * 330.00089 * 21 19 17 25 25 H 1.09007 * 109.46786 * 59.99936 * 1 2 3 26 26 H 1.08998 * 109.47130 * 179.97438 * 1 2 3 27 27 H 1.08997 * 109.47277 * 299.99944 * 1 2 3 28 28 H 1.08997 * 109.47277 * 240.00056 * 2 1 3 29 29 H 1.08997 * 109.46847 * 119.99994 * 2 1 3 30 30 H 1.08994 * 110.70513 * 260.07063 * 8 6 4 31 31 H 1.09002 * 110.69994 * 23.30818 * 8 6 4 32 32 H 1.09005 * 110.99089 * 82.44323 * 9 8 6 33 33 H 1.09001 * 110.99230 * 206.21555 * 9 8 6 34 34 H 1.09000 * 110.37467 * 278.23845 * 10 9 8 35 35 H 1.09006 * 110.37636 * 155.89688 * 10 9 8 36 36 H 1.08999 * 109.47074 * 44.13654 * 12 11 6 37 37 H 1.08993 * 109.46833 * 284.13221 * 12 11 6 38 38 H 1.09005 * 109.46476 * 60.00235 * 15 13 12 39 39 H 1.09001 * 109.46984 * 300.00560 * 15 13 12 40 40 H 1.08998 * 109.47622 * 180.02562 * 15 13 12 41 41 H 1.08995 * 109.47310 * 305.00374 * 16 13 12 42 42 H 1.09001 * 109.47166 * 65.00037 * 16 13 12 43 43 H 0.96995 * 120.00345 * 179.97438 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0140 1.3690 0.0000 4 6 3.3447 1.5448 0.0005 5 8 4.0807 0.5866 0.0005 6 6 3.9207 2.9373 0.0000 7 1 3.1263 3.6670 -0.1567 8 6 4.6329 3.2115 1.3414 9 6 5.8786 4.0315 0.9144 10 6 6.2363 3.3742 -0.4419 11 7 4.9327 3.0611 -1.0652 12 6 5.0122 1.8293 -1.8615 13 6 5.7559 2.1137 -3.1679 14 1 6.7294 2.5503 -2.9443 15 6 4.9410 3.0922 -4.0162 16 6 5.9483 0.8070 -3.9402 17 6 6.7864 1.0663 -5.1655 18 1 7.1456 2.0635 -5.3730 19 6 7.0939 0.0307 -6.0223 20 7 6.6561 -1.1834 -5.7700 21 14 8.1322 0.3523 -7.5415 22 1 9.5678 0.1724 -7.2070 23 1 7.7502 -0.6019 -8.6132 24 1 7.9040 1.7423 -8.0118 25 1 -0.3633 0.5139 -0.8901 26 1 -0.3633 -1.0276 -0.0005 27 1 -0.3634 0.5138 0.8900 28 1 1.8934 -0.5138 -0.8900 29 1 1.8933 -0.5138 0.8900 30 1 3.9949 3.7963 2.0039 31 1 4.9310 2.2772 1.8173 32 1 5.6273 5.0841 0.7839 33 1 6.6897 3.9121 1.6328 34 1 6.8094 2.4609 -0.2815 35 1 6.7973 4.0707 -1.0650 36 1 4.0057 1.4761 -2.0859 37 1 5.5478 1.0659 -1.2973 38 1 4.8040 4.0231 -3.4660 39 1 3.9676 2.6557 -4.2399 40 1 5.4706 3.2945 -4.9471 41 1 6.4512 0.0793 -3.3034 42 1 4.9762 0.4162 -4.2410 43 1 6.8720 -1.9119 -6.3729 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000602613356.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:35:34 Heat of formation + Delta-G solvation = -115.185316 kcal Electronic energy + Delta-G solvation = -21716.320308 eV Core-core repulsion = 18567.310340 eV Total energy + Delta-G solvation = -3149.009968 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 269.178 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -42.25632 -39.78596 -37.57898 -37.02906 -34.52838 -32.79995 -32.11362 -30.62281 -28.83390 -26.97757 -25.26175 -24.67177 -23.24968 -22.46041 -21.19083 -20.68112 -19.00829 -18.52221 -17.78854 -17.32867 -16.91679 -16.43566 -16.06538 -15.85255 -15.42260 -14.66412 -14.49385 -14.38623 -14.35798 -13.80869 -13.64587 -13.34258 -13.28483 -13.07381 -12.85012 -12.79076 -12.60300 -12.56581 -12.42248 -12.24526 -12.09853 -11.97835 -11.81224 -11.61484 -11.54618 -11.36918 -11.13344 -10.95235 -10.57248 -9.46424 -8.19774 -6.30622 0.98343 1.38456 1.40678 1.51914 1.58475 2.40144 2.83277 3.13163 3.40141 3.65662 3.67753 3.92461 4.00340 4.02611 4.12472 4.27106 4.29120 4.33396 4.48907 4.50948 4.68222 4.72690 4.76329 4.84322 4.87441 4.90665 4.96235 5.00742 5.07770 5.10170 5.19494 5.28001 5.38498 5.41562 5.45760 5.49629 5.69905 5.81980 5.83277 5.88787 6.25151 6.61893 6.85052 7.38168 8.93006 Molecular weight = 269.18amu Principal moments of inertia in cm(-1) A = 0.018145 B = 0.005023 C = 0.004219 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1542.715426 B = 5573.471207 C = 6635.299196 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C 0.050 3.950 3 O -0.358 6.358 4 C 0.445 3.555 5 O -0.537 6.537 6 C 0.075 3.925 7 H 0.139 0.861 8 C -0.122 4.122 9 C -0.110 4.110 10 C 0.029 3.971 11 N -0.498 5.498 12 C 0.069 3.931 13 C -0.070 4.070 14 H 0.058 0.942 15 C -0.111 4.111 16 C 0.035 3.965 17 C -0.528 4.528 18 H 0.066 0.934 19 C -0.005 4.005 20 N -0.939 5.939 21 Si 0.967 3.033 22 H -0.272 1.272 23 H -0.283 1.283 24 H -0.259 1.259 25 H 0.066 0.934 26 H 0.098 0.902 27 H 0.079 0.921 28 H 0.049 0.951 29 H 0.071 0.929 30 H 0.120 0.880 31 H 0.059 0.941 32 H 0.103 0.897 33 H 0.095 0.905 34 H 0.030 0.970 35 H 0.094 0.906 36 H 0.041 0.959 37 H 0.032 0.968 38 H 0.073 0.927 39 H 0.030 0.970 40 H 0.043 0.957 41 H -0.024 1.024 42 H -0.018 1.018 43 H 0.262 0.738 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.321 10.970 16.307 21.752 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.023 4.023 3 O -0.274 6.274 4 C 0.289 3.711 5 O -0.427 6.427 6 C -0.034 4.034 7 H 0.157 0.843 8 C -0.161 4.161 9 C -0.148 4.148 10 C -0.098 4.098 11 N -0.223 5.223 12 C -0.058 4.058 13 C -0.089 4.089 14 H 0.076 0.924 15 C -0.169 4.169 16 C -0.002 4.002 17 C -0.566 4.566 18 H 0.084 0.916 19 C -0.202 4.202 20 N -0.580 5.580 21 Si 0.791 3.209 22 H -0.198 1.198 23 H -0.209 1.209 24 H -0.183 1.183 25 H 0.085 0.915 26 H 0.116 0.884 27 H 0.098 0.902 28 H 0.068 0.932 29 H 0.089 0.911 30 H 0.138 0.862 31 H 0.078 0.922 32 H 0.121 0.879 33 H 0.114 0.886 34 H 0.049 0.951 35 H 0.112 0.888 36 H 0.059 0.941 37 H 0.050 0.950 38 H 0.092 0.908 39 H 0.049 0.951 40 H 0.062 0.938 41 H -0.006 1.006 42 H 0.000 1.000 43 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges -9.303 10.877 15.903 21.395 hybrid contribution 0.781 -1.869 -0.594 2.111 sum -8.522 9.008 15.309 19.701 Atomic orbital electron populations 1.21805 0.89683 1.04404 1.04001 1.23265 0.97652 0.79538 1.01866 1.86520 1.24089 1.33371 1.83378 1.24926 0.80904 0.93868 0.71397 1.90714 1.60862 1.44745 1.46340 1.22807 0.96789 0.89195 0.94586 0.84322 1.22835 0.98032 1.01332 0.93872 1.22708 0.97055 1.00465 0.94581 1.23324 0.90189 0.99708 0.96605 1.64219 1.06882 1.32280 1.18956 1.22462 0.98687 0.90150 0.94547 1.21014 0.98020 0.96559 0.93316 0.92389 1.21483 0.97977 0.98529 0.98878 1.18977 0.94412 0.92575 0.94259 1.21606 1.31860 0.95071 1.08029 0.91623 1.26049 0.97571 0.94769 1.01808 1.70135 1.47426 1.01204 1.39234 0.85412 0.78675 0.78528 0.78243 1.19777 1.20865 1.18318 0.91528 0.88386 0.90188 0.93236 0.91061 0.86179 0.92203 0.87869 0.88615 0.95116 0.88801 0.94071 0.94958 0.90808 0.95127 0.93825 1.00594 1.00011 0.92917 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.34 10.29 71.98 0.74 -1.60 16 2 C 0.05 1.25 6.19 71.98 0.45 1.69 16 3 O -0.36 -9.98 10.22 -51.40 -0.53 -10.51 16 4 C 0.45 13.92 5.01 71.23 0.36 14.28 16 5 O -0.54 -20.96 13.52 21.98 0.30 -20.67 16 6 C 0.08 1.88 3.88 44.51 0.17 2.05 16 7 H 0.14 2.80 8.14 -2.39 -0.02 2.78 16 8 C -0.12 -2.24 6.46 31.77 0.21 -2.04 16 9 C -0.11 -1.85 7.08 31.98 0.23 -1.63 16 10 C 0.03 0.76 6.01 86.77 0.52 1.28 16 11 N -0.50 -15.17 4.57 -864.90 -3.96 -19.13 16 12 C 0.07 2.81 2.79 86.30 0.24 3.05 16 13 C -0.07 -3.16 2.39 -10.79 -0.03 -3.18 16 14 H 0.06 2.58 7.59 -2.39 -0.02 2.56 16 15 C -0.11 -4.50 8.89 71.98 0.64 -3.86 16 16 C 0.04 2.03 4.45 29.85 0.13 2.16 16 17 C -0.53 -31.25 8.41 25.60 0.22 -31.04 16 18 H 0.07 3.69 7.06 -2.91 -0.02 3.67 16 19 C -0.01 -0.30 5.46 84.65 0.46 0.16 16 20 N -0.94 -60.10 13.29 21.45 0.28 -59.81 16 21 Si 0.97 45.75 29.54 68.60 2.03 47.77 16 22 H -0.27 -12.42 7.11 99.48 0.71 -11.72 16 23 H -0.28 -13.10 7.11 99.48 0.71 -12.40 16 24 H -0.26 -11.57 7.11 99.48 0.71 -10.86 16 25 H 0.07 1.13 8.14 -2.38 -0.02 1.11 16 26 H 0.10 1.24 8.14 -2.39 -0.02 1.22 16 27 H 0.08 1.09 8.14 -2.39 -0.02 1.07 16 28 H 0.05 1.44 8.13 -2.39 -0.02 1.42 16 29 H 0.07 1.68 8.13 -2.39 -0.02 1.66 16 30 H 0.12 1.38 8.14 -2.39 -0.02 1.36 16 31 H 0.06 1.31 7.75 -2.39 -0.02 1.29 16 32 H 0.10 1.32 8.14 -2.38 -0.02 1.30 16 33 H 0.10 1.32 8.14 -2.39 -0.02 1.30 16 34 H 0.03 0.95 7.53 -2.39 -0.02 0.93 16 35 H 0.09 2.34 8.14 -2.38 -0.02 2.32 16 36 H 0.04 1.78 6.49 -2.39 -0.02 1.77 16 37 H 0.03 1.49 6.08 -2.39 -0.01 1.48 16 38 H 0.07 2.52 7.75 -2.38 -0.02 2.50 16 39 H 0.03 1.24 8.14 -2.39 -0.02 1.22 16 40 H 0.04 1.84 6.95 -2.39 -0.02 1.82 16 41 H -0.02 -1.55 8.14 -2.39 -0.02 -1.57 16 42 H -0.02 -1.16 8.14 -2.39 -0.02 -1.18 16 43 H 0.26 15.70 8.31 -92.71 -0.77 14.93 16 Total: -1.00 -74.41 341.07 3.42 -70.99 By element: Atomic # 1 Polarization: 9.05 SS G_CDS: 0.96 Total: 10.01 kcal Atomic # 6 Polarization: -23.00 SS G_CDS: 4.33 Total: -18.66 kcal Atomic # 7 Polarization: -75.26 SS G_CDS: -3.67 Total: -78.94 kcal Atomic # 8 Polarization: -30.94 SS G_CDS: -0.23 Total: -31.17 kcal Atomic # 14 Polarization: 45.75 SS G_CDS: 2.03 Total: 47.77 kcal Total: -74.41 3.42 -70.99 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000602613356.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -44.193 kcal (2) G-P(sol) polarization free energy of solvation -74.410 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -118.602 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.417 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.993 kcal (6) G-S(sol) free energy of system = (1) + (5) -115.185 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds